CRAN Package Check Results for Package TNRS

Last updated on 2021-10-31 05:49:53 CET.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.1.0	2.59	35.47	38.06	OK
r-devel-linux-x86_64-debian-gcc	0.1.0	2.04	28.00	30.04	OK
r-devel-linux-x86_64-fedora-clang	0.1.0			56.01	NOTE
r-devel-linux-x86_64-fedora-gcc	0.1.0			44.53	NOTE
r-devel-windows-x86_64	0.1.0	5.00	224.00	229.00	ERROR
r-devel-windows-x86_64-gcc10-UCRT	0.1.0				ERROR
r-patched-linux-x86_64	0.1.0	2.66	34.26	36.92	OK
r-patched-solaris-x86	0.1.0			68.90	NOTE
r-release-linux-x86_64	0.1.0	2.50	34.54	37.04	OK
r-release-macos-arm64	0.1.0				NOTE
r-release-macos-x86_64	0.1.0				NOTE
r-release-windows-ix86+x86_64	0.1.0	6.00	44.00	50.00	ERROR
r-oldrel-macos-x86_64	0.1.0				NOTE
r-oldrel-windows-ix86+x86_64	0.1.0	6.00	58.00	64.00	ERROR

Check Details

Version: 0.1.0
Check: dependencies in R code
Result: NOTE
    Namespace in Imports field not imported from: ‘rjson’
     All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.1.0
Check: data for non-ASCII characters
Result: NOTE
     Note: found 4 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-gcc10-UCRT, r-patched-solaris-x86, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.1.0
Check: examples
Result: ERROR
    Running examples in 'TNRS-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: TNRS
    > ### Title: Resolve plant taxonomic names
    > ### Aliases: TNRS
    >
    > ### ** Examples
    >
    > {
    + #Take a subset of the testfile to speed up runtime
    + tnrs_testfile <- tnrs_testfile[1:20,]
    +
    + results <- TNRS(taxonomic_names = tnrs_testfile)
    +
    + # Inspect the results
    + head(results, 10)
    + }
    Error in function (type, msg, asError = TRUE) :
     error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
    Calls: TNRS ... .TNRS_base -> postForm -> .postForm -> <Anonymous> -> fun
    Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.0
Check: tests
Result: ERROR
     Running 'testthat.R' [13s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(TNRS)
     >
     >
     > test_check("TNRS")
     == Failed tests ================================================================
     -- Error (test-TNRS.R:7:3): example works --------------------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = tnrs_testfile) test-TNRS.R:7:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:19:3): character vector returns results ------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(...) test-TNRS.R:19:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:28:3): character returns results -------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = c("Epidendrum boyleii")) test-TNRS.R:28:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:40:3): all sources work ----------------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = species, sources = "tpl") test-TNRS.R:40:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:64:3): matches all returns more rows than best -----------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = "Epidendon boyleii", matches = "all") test-TNRS.R:64:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:74:3): parsing returns matches ---------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = "Epidentrum boyleii", mode = "parse") test-TNRS.R:74:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_base.R:7:3): example works ---------------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS:::.TNRS_base(taxonomic_names = tnrs_testfile) test-TNRS_base.R:7:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_citations.R:6:3): example works ----------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_citations() test-TNRS_citations.R:6:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_metadata.R:6:3): example works -----------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_metadata() test-TNRS_metadata.R:6:2
     2. | \-TNRS::TNRS_citations()
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_sources.R:6:3): example works ------------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_sources() test-TNRS_sources.R:6:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_version.R:6:3): example works ------------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_version() test-TNRS_version.R:6:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
    
     [ FAIL 11 | WARN 0 | SKIP 0 | PASS 1 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-x86_64

Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'TNRS_vignette.Rmd' using rmarkdown
    Quitting from lines 30-50 (TNRS_vignette.Rmd)
    Error: processing vignette 'TNRS_vignette.Rmd' failed with diagnostics:
    error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
    --- failed re-building 'TNRS_vignette.Rmd'
    
    SUMMARY: processing the following file failed:
     'TNRS_vignette.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.1.0
Check: examples
Result: ERROR
    Running examples in 'TNRS-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: TNRS
    > ### Title: Resolve plant taxonomic names
    > ### Aliases: TNRS
    >
    > ### ** Examples
    >
    > {
    + #Take a subset of the testfile to speed up runtime
    + tnrs_testfile <- tnrs_testfile[1:20,]
    +
    + results <- TNRS(taxonomic_names = tnrs_testfile)
    +
    + # Inspect the results
    + head(results, 10)
    + }
    Error in function (type, msg, asError = TRUE) :
     SSL certificate problem: certificate has expired
    Calls: TNRS ... .TNRS_base -> postForm -> .postForm -> <Anonymous> -> fun
    Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 0.1.0
Check: tests
Result: ERROR
     Running 'testthat.R'
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(TNRS)
     >
     >
     > test_check("TNRS")
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error (test-TNRS.R:7:3): example works ──────────────────────────────────────
     <SSL_CACERT/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(60L, "SSL certificate problem: certificate has expired", TRUE)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─TNRS::TNRS(taxonomic_names = tnrs_testfile) test-TNRS.R:7:2
     2. │ └─TNRS:::.TNRS_base(...)
     3. │ └─RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. │ └─RCurl::.postForm(curl, .opts, .params, style)
     5. └─(function (type, msg, asError = TRUE) ...
     ── Error (test-TNRS.R:19:3): character vector returns results ──────────────────
     <SSL_CACERT/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(60L, "SSL certificate problem: certificate has expired", TRUE)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─TNRS::TNRS(...) test-TNRS.R:19:2
     2. │ └─TNRS:::.TNRS_base(...)
     3. │ └─RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. │ └─RCurl::.postForm(curl, .opts, .params, style)
     5. └─(function (type, msg, asError = TRUE) ...
     ── Error (test-TNRS.R:28:3): character returns results ─────────────────────────
     <SSL_CACERT/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(60L, "SSL certificate problem: certificate has expired", TRUE)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─TNRS::TNRS(taxonomic_names = c("Epidendrum boyleii")) test-TNRS.R:28:2
     2. │ └─TNRS:::.TNRS_base(...)
     3. │ └─RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. │ └─RCurl::.postForm(curl, .opts, .params, style)
     5. └─(function (type, msg, asError = TRUE) ...
     ── Error (test-TNRS.R:40:3): all sources work ──────────────────────────────────
     <SSL_CACERT/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(60L, "SSL certificate problem: certificate has expired", TRUE)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─TNRS::TNRS(taxonomic_names = species, sources = "tpl") test-TNRS.R:40:2
     2. │ └─TNRS:::.TNRS_base(...)
     3. │ └─RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. │ └─RCurl::.postForm(curl, .opts, .params, style)
     5. └─(function (type, msg, asError = TRUE) ...
     ── Error (test-TNRS.R:64:3): matches all returns more rows than best ───────────
     <SSL_CACERT/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(60L, "SSL certificate problem: certificate has expired", TRUE)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─TNRS::TNRS(taxonomic_names = "Epidendon boyleii", matches = "all") test-TNRS.R:64:2
     2. │ └─TNRS:::.TNRS_base(...)
     3. │ └─RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. │ └─RCurl::.postForm(curl, .opts, .params, style)
     5. └─(function (type, msg, asError = TRUE) ...
     ── Error (test-TNRS.R:74:3): parsing returns matches ───────────────────────────
     <SSL_CACERT/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(60L, "SSL certificate problem: certificate has expired", TRUE)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─TNRS::TNRS(taxonomic_names = "Epidentrum boyleii", mode = "parse") test-TNRS.R:74:2
     2. │ └─TNRS:::.TNRS_base(...)
     3. │ └─RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. │ └─RCurl::.postForm(curl, .opts, .params, style)
     5. └─(function (type, msg, asError = TRUE) ...
     ── Error (test-TNRS_base.R:7:3): example works ─────────────────────────────────
     <SSL_CACERT/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(60L, "SSL certificate problem: certificate has expired", TRUE)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─TNRS:::.TNRS_base(taxonomic_names = tnrs_testfile) test-TNRS_base.R:7:2
     2. │ └─RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. │ └─RCurl::.postForm(curl, .opts, .params, style)
     4. └─(function (type, msg, asError = TRUE) ...
     ── Error (test-TNRS_citations.R:6:3): example works ────────────────────────────
     <SSL_CACERT/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(60L, "SSL certificate problem: certificate has expired", TRUE)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─TNRS::TNRS_citations() test-TNRS_citations.R:6:2
     2. │ └─RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. │ └─RCurl::.postForm(curl, .opts, .params, style)
     4. └─(function (type, msg, asError = TRUE) ...
     ── Error (test-TNRS_metadata.R:6:3): example works ─────────────────────────────
     <SSL_CACERT/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(60L, "SSL certificate problem: certificate has expired", TRUE)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─TNRS::TNRS_metadata() test-TNRS_metadata.R:6:2
     2. │ └─TNRS::TNRS_citations()
     3. │ └─RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. │ └─RCurl::.postForm(curl, .opts, .params, style)
     5. └─(function (type, msg, asError = TRUE) ...
     ── Error (test-TNRS_sources.R:6:3): example works ──────────────────────────────
     <SSL_CACERT/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(60L, "SSL certificate problem: certificate has expired", TRUE)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─TNRS::TNRS_sources() test-TNRS_sources.R:6:2
     2. │ └─RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. │ └─RCurl::.postForm(curl, .opts, .params, style)
     4. └─(function (type, msg, asError = TRUE) ...
     ── Error (test-TNRS_version.R:6:3): example works ──────────────────────────────
     <SSL_CACERT/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(60L, "SSL certificate problem: certificate has expired", TRUE)`: SSL certificate problem: certificate has expired
     Backtrace:
     █
     1. ├─TNRS::TNRS_version() test-TNRS_version.R:6:2
     2. │ └─RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. │ └─RCurl::.postForm(curl, .opts, .params, style)
     4. └─(function (type, msg, asError = TRUE) ...
    
     [ FAIL 11 | WARN 0 | SKIP 0 | PASS 1 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
    --- re-building 'TNRS_vignette.Rmd' using rmarkdown
    Quitting from lines 30-50 (TNRS_vignette.Rmd)
    Error: processing vignette 'TNRS_vignette.Rmd' failed with diagnostics:
    SSL certificate problem: certificate has expired
    --- failed re-building 'TNRS_vignette.Rmd'
    
    SUMMARY: processing the following file failed:
     'TNRS_vignette.Rmd'
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-windows-x86_64-gcc10-UCRT

Version: 0.1.0
Check: tests
Result: ERROR
     Running 'testthat.R' [6s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(TNRS)
     >
     >
     > test_check("TNRS")
     == Failed tests ================================================================
     -- Error (test-TNRS.R:7:3): example works --------------------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = tnrs_testfile) test-TNRS.R:7:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:19:3): character vector returns results ------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(...) test-TNRS.R:19:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:28:3): character returns results -------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = c("Epidendrum boyleii")) test-TNRS.R:28:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:40:3): all sources work ----------------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = species, sources = "tpl") test-TNRS.R:40:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:64:3): matches all returns more rows than best -----------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = "Epidendon boyleii", matches = "all") test-TNRS.R:64:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS.R:74:3): parsing returns matches ---------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS(taxonomic_names = "Epidentrum boyleii", mode = "parse") test-TNRS.R:74:2
     2. | \-TNRS:::.TNRS_base(...)
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_base.R:7:3): example works ---------------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS:::.TNRS_base(taxonomic_names = tnrs_testfile) test-TNRS_base.R:7:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_citations.R:6:3): example works ----------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_citations() test-TNRS_citations.R:6:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_metadata.R:6:3): example works -----------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_metadata() test-TNRS_metadata.R:6:2
     2. | \-TNRS::TNRS_citations()
     3. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     4. | \-RCurl::.postForm(curl, .opts, .params, style)
     5. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_sources.R:6:3): example works ------------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_sources() test-TNRS_sources.R:6:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
     -- Error (test-TNRS_version.R:6:3): example works ------------------------------
     <SSL_CONNECT_ERROR/GenericCurlError/error/condition>
     Error in `function (type, msg, asError = TRUE)
     {
     if (!is.character(type)) {
     i = match(type, CURLcodeValues)
     typeName = if (is.na(i))
     character()
     else names(CURLcodeValues)[i]
     }
     typeName = gsub("^CURLE_", "", typeName)
     fun = (if (asError)
     stop
     else warning)
     fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
     "GenericCurlError", "error", "condition")))
     }(35L, "error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version",
     TRUE)`: error:1407742E:SSL routines:SSL23_GET_SERVER_HELLO:tlsv1 alert protocol version
     Backtrace:
     x
     1. +-TNRS::TNRS_version() test-TNRS_version.R:6:2
     2. | \-RCurl::postForm(url, .opts = list(postfields = input_json, httpheader = headers))
     3. | \-RCurl::.postForm(curl, .opts, .params, style)
     4. \-(function (type, msg, asError = TRUE) ...
    
     [ FAIL 11 | WARN 0 | SKIP 0 | PASS 1 ]
     Error: Test failures
     Execution halted
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64