Last updated on 2021-11-03 08:50:29 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.1 | 63.35 | 557.75 | 621.10 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.4.1 | 54.72 | 422.48 | 477.20 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.4.1 | 817.45 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.4.1 | 824.03 | OK | |||
| r-devel-windows-x86_64 | 0.4.1 | 94.00 | 610.00 | 704.00 | OK | |
| r-devel-windows-x86_64-gcc10-UCRT | 0.4.1 | OK | ||||
| r-patched-linux-x86_64 | 0.4.1 | OK | ||||
| r-patched-solaris-x86 | 0.4.1 | 746.90 | ERROR | |||
| r-release-linux-x86_64 | 0.4.1 | 62.60 | 556.35 | 618.95 | OK | |
| r-release-macos-arm64 | 0.4.1 | NOTE | ||||
| r-release-macos-x86_64 | 0.4.1 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.4.1 | 128.00 | 935.00 | 1063.00 | OK | |
| r-oldrel-macos-x86_64 | 0.4.1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.4.1 | 138.00 | 1170.00 | 1308.00 | OK |
Version: 0.4.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [8m/11m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(methods)
> library(data.table)
> library(microbenchmark)
> library(glmnet)
Loading required package: Matrix
Loaded glmnet 4.1-2
> library(SuperLearner)
Loading required package: nnls
Loading required package: gam
Loading required package: splines
Loading required package: foreach
Loaded gam 1.20
Super Learner
Version: 2.0-28
Package created on 2021-05-04
> library(hal9001)
Loading required package: Rcpp
hal9001 v0.4.1: The Scalable Highly Adaptive Lasso
note: fit_hal defaults have changed. See ?fit_hal for details
>
> test_check("hal9001")
[1] "Inf, 0.773599"
[1] 0
[1] -Inf
[1] "0.773599, 1.526959"
x2
0
[1] "0.773599, 1.011391"
x2
-1.242867e-16
[1] "0.773599, 1.115483"
x2
0
[1] "0.773599, 1.190784"
x2
0
[1] "0.773599, 1.079310"
x2
-5.021941e-17
[1] "0.773599, 1.290604"
x2
-4.068237e-17
[1] "0.773599, 1.206894"
x2
-3.382656e-17
[1] "0.773599, 1.339743"
x2
8.610836e-17
[1] "0.773599, 1.255091"
x2
0
[1] "0.773599, 1.300398"
x2
0
[1] "0.773599, 1.162047"
x2
0
[1] "0.773599, 0.994395"
x2
0
[1] "0.773599, 1.375928"
x2
0
[1] "0.773599, 1.113516"
x2
0
[1] "0.773599, 1.238524"
x2
0
[1] "0.773599, 1.185771"
x2
0
[1] "0.773599, 0.996405"
x2
0
[1] "0.773599, 1.265326"
x2
0
[1] "0.773599, 1.260696"
x2
0
[1] "0.773599, 1.293383"
x2
0
[1] "0.773599, 1.177323"
x2
0
[1] "0.773599, 1.278974"
x2
0
[1] "0.773599, 1.181330"
x2
0
[1] "0.773599, 1.300374"
x2
0
[1] "0.773599, 1.079252"
x2
0
[1] "0.773599, 1.075047"
x2
0
[1] "0.773599, 1.055600"
x2
0
[1] "0.773599, 1.199946"
x2
0
[1] "0.773599, 1.565024"
x2
0
[1] "0.773599, 1.243558"
x2
0
[1] "0.773599, 1.075137"
x2
0
[1] "0.773599, 1.305829"
x2
0
[1] "0.773599, 1.188793"
x2
0
[1] "0.773599, 0.933273"
x2
0
[1] "0.773599, 1.035368"
x2
0
[1] "0.773599, 1.227610"
x2
0
[1] "0.773599, 1.372790"
x2
0
[1] "0.773599, 1.244740"
x2
0
[1] "0.773599, 1.232193"
x2
0
[1] "0.773599, 1.428567"
x2
0
[1] "0.773599, 1.213061"
x2
0
[1] "0.773599, 1.089046"
x2
0
[1] "0.773599, 1.244772"
x2
0
[1] "0.773599, 1.211117"
x2
0
[1] "0.773599, 1.238113"
x2
0
[1] "0.773599, 1.276157"
x2
0
[1] "0.773599, 1.192694"
x2
0
[1] "0.773599, 1.205110"
x2
0
[1] "0.773599, 1.485266"
x2
0
[1] "0.773599, 1.305363"
x2
0
[1] "0.773599, 1.079774"
x2
0
[1] "0.773599, 1.496469"
x2
0
[1] "0.773599, 1.448393"
x2
0
[1] "0.773599, 1.285326"
x2
0
[1] "0.773599, 1.146448"
x2
0
[1] "0.773599, 1.509982"
x2
0
[1] "0.773599, 1.320984"
x2
0
[1] "0.773599, 1.432850"
x2
0
[1] "0.773599, 1.096394"
x2
0
[1] "0.773599, 1.499796"
x2
0
[1] "0.773599, 1.492943"
x2
0
[1] "0.773599, 1.260410"
x2
0
[1] "0.773599, 1.165764"
x2
0
[1] "0.773599, 1.310227"
x2
0
[1] "0.773599, 1.105263"
x2
0
[1] "0.773599, 1.143733"
x2
0
[1] "0.773599, 1.285088"
x2
0
[1] "0.773599, 1.513940"
x2
0
[1] "0.773599, 1.390481"
x2
0
[1] "0.773599, 1.072207"
x2
0
[1] "0.773599, 1.113772"
x2
0
[1] "0.773599, 1.352644"
x2
0
[1] "0.773599, 1.198741"
x2
0
[1] "0.773599, 1.354882"
x2
0
[1] "0.773599, 1.133907"
x2
0
[1] "0.773599, 1.580926"
x2
0
[1] "0.773599, 1.361303"
x2
0
[1] "0.773599, 1.337777"
x2
0
[1] "0.773599, 0.976709"
x2
0
[1] "0.773599, 1.267284"
x2
0
[1] "0.773599, 1.500558"
x2
0
[1] "0.773599, 1.421943"
x2
0
[1] "0.773599, 1.390147"
x2
0
[1] "0.773599, 1.438975"
x2
0
[1] "0.773599, 1.069927"
x2
0
[1] "0.773599, 1.300625"
x2
0
[1] "0.773599, 1.151155"
x2
0
[1] "0.773599, 1.178412"
x2
0
[1] "0.773599, 1.088181"
x2
0
[1] "0.773599, 1.531994"
x2
0
[1] "0.773599, 1.511669"
x2
0
[1] "0.773599, 1.521285"
x2
0
[1] "0.773599, 1.542941"
x2
0
[1] "0.773599, 1.333595"
x2
0
[1] "0.773599, 1.384932"
x2
0
[1] "0.773599, 1.124085"
x2
0
[1] "0.773599, 1.510438"
x2
0
[1] "0.773599, 0.926998"
x2
0
[1] "0.773599, 1.433839"
x2
0
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-general_families.R:31:1): (code run outside of `test_that()`) ───
Error in `elnet.fit(x, z, w, lambda, alpha, intercept, thresh = thresh,
maxit = maxit, penalty.factor = vp, exclude = exclude, lower.limits = lower.limits,
upper.limits = upper.limits, warm = fit, from.glmnet.fit = TRUE,
save.fit = TRUE)`: NA/NaN/Inf in foreign function call (arg 23)
Backtrace:
█
1. ├─base::suppressWarnings(fit_hal(X = x, Y = y, family = binomial())) test-general_families.R:31:0
2. │ └─base::withCallingHandlers(...)
3. └─hal9001::fit_hal(X = x, Y = y, family = binomial())
4. ├─base::do.call(glmnet::cv.glmnet, fit_control)
5. └─(function (x, y, weights = NULL, offset = NULL, lambda = NULL, ...
6. └─glmnet:::cv.glmnet.raw(...)
7. └─glmnet::glmnet(...)
8. └─glmnet:::glmnet.path(...)
9. └─glmnet:::glmnet.fit(...)
10. └─glmnet:::elnet.fit(...)
── Error (test-hal_binomial.R:23:1): (code run outside of `test_that()`) ───────
Error in `intI(j, n = x@Dim[2], dn[[2]], give.dn = FALSE)`: 'NA' indices are not (yet?) supported for sparse Matrices
Backtrace:
█
1. └─hal9001::fit_hal(X = x, Y = y, family = "binomial", yolo = FALSE) test-hal_binomial.R:23:0
2. ├─base::do.call(glmnet::cv.glmnet, fit_control)
3. └─(function (x, y, weights = NULL, offset = NULL, lambda = NULL, ...
4. └─glmnet:::cv.glmnet.raw(...)
5. ├─glmnet::buildPredmat(...)
6. └─glmnet:::buildPredmat.lognetlist(...)
7. └─glmnet:::buildPredmat.default(...)
8. ├─stats::predict(...)
9. ├─glmnet:::predict.lognet(...)
10. ├─base::NextMethod("predict")
11. └─glmnet::predict.glmnet(...)
12. ├─nbeta[, lamlist$left, drop = FALSE]
13. └─nbeta[, lamlist$left, drop = FALSE]
14. └─Matrix:::subCsp_cols(x, j, drop = drop)
15. └─Matrix:::intI(j, n = x@Dim[2], dn[[2]], give.dn = FALSE)
[ FAIL 2 | WARN 7 | SKIP 0 | PASS 62 ]
Error: Test failures
Execution halted
Flavor: r-patched-solaris-x86
Version: 0.4.1
Check: installed package size
Result: NOTE
installed size is 5.5Mb
sub-directories of 1Mb or more:
libs 5.0Mb
Flavor: r-release-macos-arm64