Last updated on 2021-12-09 08:50:11 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1-23 | 9.88 | 220.79 | 230.67 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1-23 | 7.46 | 153.87 | 161.33 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1-23 | 276.28 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1-23 | 249.72 | NOTE | |||
| r-devel-windows-x86_64-new-UL | 1.1-23 | 47.00 | 289.00 | 336.00 | NOTE | |
| r-devel-windows-x86_64-new-TK | 1.1-23 | NOTE | ||||
| r-devel-windows-x86_64-old | 1.1-23 | 17.00 | 282.00 | 299.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1-23 | 15.91 | 217.37 | 233.28 | NOTE | |
| r-release-linux-x86_64 | 1.1-23 | 10.39 | 221.91 | 232.30 | NOTE | |
| r-release-macos-arm64 | 1.1-23 | ERROR | ||||
| r-release-macos-x86_64 | 1.1-23 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.1-23 | 14.00 | 293.00 | 307.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.1-23 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.1-23 | 19.00 | 255.00 | 274.00 | NOTE |
Version: 1.1-23
Check: R code for possible problems
Result: NOTE
FcAtm.from.Dataframe: no visible binding for global variable
'splinefun'
GaudinskiModel14 : LitterFlux: no visible global function definition
for 'spline'
GaudinskiModel14 : RootFlux: no visible global function definition for
'spline'
GaudinskiModel14 : fX: no visible global function definition for
'spline'
MeanAge2: no visible global function definition for 'splinefun'
MeanAge3: no visible global function definition for 'pdf'
MeanAge3: no visible global function definition for 'splinefun'
MeanAge3 : E: no visible global function definition for 'splinefun'
MeanAge3 : E: no visible global function definition for 'integrate'
MeanAge3: no visible global function definition for 'dev.off'
MeanTT: no visible global function definition for 'splinefun'
MeanTT : p: no visible global function definition for 'integrate'
MeanTT: no visible global function definition for 'lines'
MeanTT: no visible global function definition for 'legend'
OnepModel: no visible global function definition for 'splinefun'
OnepModel14 : inputFlux: no visible global function definition for
'spline'
OnepModel14 : fX: no visible global function definition for 'spline'
RothCModel: no visible global function definition for 'splinefun'
ThreepFeedbackModel: no visible global function definition for
'splinefun'
ThreepFeedbackModel14 : inputFlux: no visible global function
definition for 'spline'
ThreepFeedbackModel14 : fX: no visible global function definition for
'spline'
ThreepParallelModel : inputrate: no visible global function definition
for 'spline'
ThreepParallelModel : fX: no visible global function definition for
'spline'
ThreepParallelModel14 : inputrate: no visible global function
definition for 'spline'
ThreepParallelModel14 : fX: no visible global function definition for
'spline'
ThreepSeriesModel: no visible global function definition for
'splinefun'
ThreepSeriesModel14 : inputFlux: no visible global function definition
for 'spline'
ThreepSeriesModel14 : fX: no visible global function definition for
'spline'
TimeMap.from.Dataframe: no visible binding for global variable
'splinefun'
TwopFeedbackModel: no visible global function definition for
'splinefun'
TwopFeedbackModel : fX: no visible global function definition for
'spline'
TwopFeedbackModel14 : inputFlux: no visible global function definition
for 'spline'
TwopFeedbackModel14 : fX: no visible global function definition for
'spline'
TwopParallelModel : inputrate: no visible global function definition
for 'spline'
TwopParallelModel : fX: no visible global function definition for
'spline'
TwopParallelModel14 : inputrate: no visible global function definition
for 'spline'
TwopParallelModel14 : fX: no visible global function definition for
'spline'
TwopSeriesModel: no visible global function definition for 'splinefun'
TwopSeriesModel14 : inputFlux: no visible global function definition
for 'spline'
TwopSeriesModel14 : fX: no visible global function definition for
'spline'
Yasso07Model: no visible global function definition for 'splinefun'
YassoModel: no visible global function definition for 'splinefun'
linesCPool: no visible global function definition for 'lines'
plotAndCheck: no visible global function definition for 'pdf'
plotAndCheck: no visible global function definition for 'dev.off'
plotC14Pool: no visible global function definition for 'lines'
plotCPool: no visible global function definition for 'lines'
res2fun: no visible global function definition for 'splinefun'
turnoverFit: no visible binding for global variable 'IntCal13'
turnoverFit: no visible binding for global variable 'Hua2013'
turnoverFit: no visible global function definition for 'tail'
turnoverFit: no visible global function definition for 'optimize'
turnoverFit: no visible global function definition for 'par'
turnoverFit: no visible global function definition for 'points'
turnoverFit: no visible global function definition for 'lines'
turnoverFit: no visible global function definition for 'legend'
turnoverFit: no visible global function definition for 'curve'
turnoverFit: no visible global function definition for 'abline'
BoundFc,data.frame-missing-missing-missing-character-missing: no
visible binding for global variable 'splinefun'
BoundFc,data.frame-missing-missing-numeric-character-missing: no
visible binding for global variable 'splinefun'
BoundInFlux,data.frame-missing-missing-missing-missing: no visible
binding for global variable 'splinefun'
computeResults,MCSim : singleThreadParticleSimulator: no visible global
function definition for 'integrate'
computeResults,MCSim : singleThreadParticleSimulator: no visible global
function definition for 'runif'
getAccumulatedRelease,Model: no visible global function definition for
'splinefun'
getMeanTransitTime,ConstLinDecompOp: no visible global function
definition for 'splinefun'
getMeanTransitTime,ConstLinDecompOp: no visible global function
definition for 'integrate'
initialize,BoundFc: no visible binding for global variable 'splinefun'
initialize,NlModel: no visible global function definition for
'TransportDecompositionOperator.new'
Undefined global functions or variables:
Hua2013 IntCal13 TransportDecompositionOperator.new abline curve
dev.off integrate legend lines optimize par pdf points runif spline
splinefun tail
Consider adding
importFrom("grDevices", "dev.off", "pdf")
importFrom("graphics", "abline", "curve", "legend", "lines", "par",
"points")
importFrom("stats", "integrate", "optimize", "runif", "spline",
"splinefun")
importFrom("utils", "tail")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-devel-windows-x86_64-old, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1-23
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘ParameterEstimation.Rnw’
...
> cov0 <- summary(Fit)$cov.scaled
> MCMC <- modMCMC(f = R14tCost, p = Fit$par, niter = 1000,
+ jump = NULL, var0 = var0, wvar0 = 0, lower = c(-3, -3, -1,
+ 0, 0), upper = .... [TRUNCATED]
When sourcing ‘ParameterEstimation.R’:
Error: values of 'p' should be inbetween 'lower' and 'upper'
Execution halted
‘GeneralModel.Rnw’... [1s/1s] OK
‘ParameterEstimation.Rnw’... failed
Flavor: r-release-macos-arm64
Version: 1.1-23
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘GeneralModel.Rnw’ using Sweave
Loading required package: deSolve
Loading required package: parallel
Loading required package: RUnit
--- finished re-building ‘GeneralModel.Rnw’
--- re-building ‘ParameterEstimation.Rnw’ using Sweave
Loading required package: deSolve
Loading required package: parallel
Loading required package: RUnit
Loading required package: rootSolve
Loading required package: coda
Warning in title(...) :
font metrics unknown for Unicode character U+2030
Warning in title(...) :
conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <e2>
Warning in title(...) :
conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <80>
Warning in title(...) :
conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <b0>
Warning in title(...) :
font metrics unknown for Unicode character U+2030
Warning in title(...) :
conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <e2>
Warning in title(...) :
conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <80>
Warning in title(...) :
conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <b0>
Warning in title(...) :
conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <e2>
Warning in title(...) :
conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <80>
Warning in title(...) :
conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <b0>
Warning in title(...) :
conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <e2>
Warning in title(...) :
conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <80>
Warning in title(...) :
conversion failure on '(‰)' in 'mbcsToSbcs': dot substituted for <b0>
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Warning in .local(t, A, ivList, initialValF, inputFluxes, inputFc, pass = pass, :
The argument Fc has been renamed to inputFc. The use of Fc is deprecated and will be removed in the next version.
Please change your code to use the new keyword argument inputFc.
Error: processing vignette 'ParameterEstimation.Rnw' failed with diagnostics:
chunk 19
Error in modMCMC(f = R14tCost, p = Fit$par, niter = 1000, jump = NULL, :
values of 'p' should be inbetween 'lower' and 'upper'
--- failed re-building ‘ParameterEstimation.Rnw’
SUMMARY: processing the following file failed:
‘ParameterEstimation.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64