Last updated on 2021-12-09 08:49:57 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.8.6 | 39.18 | 643.09 | 682.27 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.8.6 | 34.75 | 475.34 | 510.09 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.8.6 | 921.57 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.8.6 | 772.50 | ERROR | |||
| r-devel-windows-x86_64-new-UL | 1.8.6 | 72.00 | 609.00 | 681.00 | NOTE | |
| r-devel-windows-x86_64-new-TK | 1.8.6 | NOTE | ||||
| r-devel-windows-x86_64-old | 1.8.6 | 64.00 | 635.00 | 699.00 | NOTE | |
| r-patched-linux-x86_64 | 1.8.6 | 43.34 | 641.52 | 684.86 | NOTE | |
| r-release-linux-x86_64 | 1.8.6 | 36.00 | 645.88 | 681.88 | NOTE | |
| r-release-macos-arm64 | 1.8.6 | NOTE | ||||
| r-release-macos-x86_64 | 1.8.6 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.8.6 | 62.00 | 1005.00 | 1067.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.8.6 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.8.6 | 93.00 | 1037.00 | 1130.00 | NOTE |
Version: 1.8.6
Check: package dependencies
Result: NOTE
Package which this enhances but not available for checking: 'INLA'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.8.6
Check: installed package size
Result: NOTE
installed size is 5.4Mb
sub-directories of 1Mb or more:
data 3.8Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-old, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.8.6
Check: data for non-ASCII characters
Result: NOTE
Note: found 4 marked UTF-8 strings
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-TK, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64
Version: 1.8.6
Check: tests
Result: ERROR
Running ‘RFsimulate.R’ [20s/24s]
Running ‘krige.R’ [15s/19s]
Running ‘lgcp.R’ [22s/28s]
Running ‘lgm.R’ [25s/29s]
Running ‘lgmRaster.R’ [162s/97s]
Running ‘likfitLgm.R’ [12s/12s]
Running ‘matern.R’
Running ‘maternGmrfPrec.R’ [12s/12s]
Running ‘profLlgm.R’ [15s/12s]
Running ‘simLgcp.R’ [11s/12s]
Running ‘stackRasterList.R’
Running the tests in ‘tests/simLgcp.R’ failed.
Complete output:
> options("rgdal_show_exportToProj4_warnings"="none")
> library('geostatsp')
Loading required package: Matrix
Loading required package: raster
Loading required package: sp
> mymodel = c(mean=-1.5, variance=1,
+ range=2, shape=2)
>
> myraster = raster(nrows=15,ncols=15,xmn=0,xmx=10,ymn=0,ymx=10)
>
> # some covariates, deliberately with a different resolution than myraster
> covA = covB = myoffset = raster(extent(myraster), 10, 10)
> values(covA) = as.vector(matrix(1:10, 10, 10))
> values(covB) = as.vector(matrix(1:10, 10, 10, byrow=TRUE))
> values(myoffset) = round(seq(-1, 1, len=ncell(myoffset)))
>
> myCovariate = list(a=covA, b=covB, offsetFooBar = myoffset)
>
> set.seed(0)
> myLgcp=simLgcp(mymodel, myCovariate,
+ betas=c(a=-0.1, b=0.25),
+ offset='offsetFooBar',
+ rasterTemplate=myraster)
New output format of RFsimulate: S4 object of class 'RFsp';
for a bare, but faster array format use 'RFoptions(spConform=FALSE)'.
>
> if(requireNamespace("INLA", quietly=TRUE)) {
+ res = lgcp(data=myLgcp$events,
+ formula = ~ a + b + offset(offsetFooBar),
+ grid=squareRaster(myoffset, 15),
+ covariates=myCovariate,
+ priorCI=list(sd=c(0.9, 1.1), range=c(0.4, 0.41)),
+ control.mode=list(theta=c(0.022, -0.5),restart=TRUE)
+ )
+
+ res$parameters$summary[,c(1,3,5)]
+
+ lgcpRoc = spatialRoc(
+ fit=res,
+ rr=c(2,3),
+ truth=myLgcp,
+ random=FALSE)
+
+ head(lgcpRoc)
+
+ plot(lgcpRoc[,'onemspec'] ,
+ lgcpRoc[,'2'],
+ type='o',
+ xlim=c(0,1), ylim=c(0,1),
+ ylab='sensitivity', xlab='1-specificity'
+ )
+
+ }
GitID: file: error-handler.c 770fd3bf230ee6f56b07b40276712783a6ce895c - Sun Nov 21 18:53:10 2021 +0300
Error:6 Reason: Error reordering the graph
Message: Condition `result == 0' is not TRUE
GitID: file: error-handler.c 770fd3bf230ee6f56b07b40276712783a6ce895c - Sun Nov 21 18:53:10 2021 +0300
Error:6 Reason: Error reordering the graph
Message: Condition `result == 0' is not TRUE
Line:1912 Function: GMRFLib_amdc
Line:1912 Function: GMRFLib_amdc
sh: line 1: 2102346 Aborted (core dumped) '/data/gannet/ripley/R/test-4.2/INLA/bin/linux/64bit/inla.mkl.run' -s -v -t24:1 -B0 -P classic '/tmp/RtmpxBhXE0/working_dir/RtmpSxTq3t/file201120b1f304c/Model.ini' > '/tmp/RtmpxBhXE0/working_dir/RtmpSxTq3t/file201120b1f304c/Logfile.txt'
Error in inla.inlaprogram.has.crashed() :
The inla-program exited with an error. Unless you interupted it yourself, please rerun with verbose=TRUE and check the output carefully.
If this does not help, please contact the developers at <help@r-inla.org>.
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function 'rasterize' for signature '"list", "RasterLayer"'
Calls: spatialRoc -> spatialRocPolyTemplate -> rasterize -> <Anonymous>
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc