Last updated on 2022-01-06 20:51:43 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 3.85 | 56.36 | 60.21 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 2.58 | 43.37 | 45.95 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 73.53 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 61.00 | ERROR | |||
| r-devel-windows-x86_64-new-UL | 0.1.0 | 42.00 | 77.00 | 119.00 | ERROR | |
| r-devel-windows-x86_64-new-TK | 0.1.0 | ERROR | ||||
| r-patched-linux-x86_64 | 0.1.0 | 3.08 | 59.81 | 62.89 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 3.66 | 59.44 | 63.10 | OK | |
| r-release-macos-arm64 | 0.1.0 | OK | ||||
| r-release-macos-x86_64 | 0.1.0 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.1.0 | 9.00 | 80.00 | 89.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.0 | ERROR | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.0 | 10.00 | 66.00 | 76.00 | ERROR |
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in 'SNPfiltR-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: assess_missing_data_pca
> ### Title: Vizualise how missing data thresholds affect sample clustering
> ### Aliases: assess_missing_data_pca
>
> ### ** Examples
>
> assess_missing_data_pca(vcfR = SNPfiltR::vcfR.example,
+ popmap = SNPfiltR::popmap,
+ thresholds = c(.6,.8))
cutoff is specified, filtered vcfR object will be returned
41% of SNPs fell below a completeness cutoff of 0.6 and were removed from the VCF
Loading required namespace: adegenet
Error in dfs[[i]] <- pca.scores :
attempt to select less than one element in OneIndex <real>
Calls: assess_missing_data_pca
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'reproducible-vignette.Rmd' using rmarkdown
Quitting from lines 102-104 (reproducible-vignette.Rmd)
Error: processing vignette 'reproducible-vignette.Rmd' failed with diagnostics:
attempt to select less than one element in OneIndex <real>
--- failed re-building 'reproducible-vignette.Rmd'
SUMMARY: processing the following file failed:
'reproducible-vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘SNPfiltR-Ex.R’ failed
The error most likely occurred in:
> ### Name: assess_missing_data_pca
> ### Title: Vizualise how missing data thresholds affect sample clustering
> ### Aliases: assess_missing_data_pca
>
> ### ** Examples
>
> assess_missing_data_pca(vcfR = SNPfiltR::vcfR.example,
+ popmap = SNPfiltR::popmap,
+ thresholds = c(.6,.8))
cutoff is specified, filtered vcfR object will be returned
41% of SNPs fell below a completeness cutoff of 0.6 and were removed from the VCF
Loading required namespace: adegenet
Error in dfs[[i]] <- pca.scores :
attempt to select less than one element in OneIndex <real>
Calls: assess_missing_data_pca
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK
Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘reproducible-vignette.Rmd’ using rmarkdown
Quitting from lines 102-104 (reproducible-vignette.Rmd)
Error: processing vignette 'reproducible-vignette.Rmd' failed with diagnostics:
attempt to select less than one element in OneIndex <real>
--- failed re-building ‘reproducible-vignette.Rmd’
SUMMARY: processing the following file failed:
‘reproducible-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘SNPfiltR-Ex.R’ failed
The error most likely occurred in:
> ### Name: assess_missing_data_pca
> ### Title: Vizualise how missing data thresholds affect sample clustering
> ### Aliases: assess_missing_data_pca
>
> ### ** Examples
>
> assess_missing_data_pca(vcfR = SNPfiltR::vcfR.example,
+ popmap = SNPfiltR::popmap,
+ thresholds = c(.6,.8))
cutoff is specified, filtered vcfR object will be returned
41% of SNPs fell below a completeness cutoff of 0.6 and were removed from the VCF
Loading required namespace: adegenet
Error in dfs[[i]] <- pca.scores :
attempt to select less than one element in integerOneIndex
Calls: assess_missing_data_pca
Execution halted
Flavors: r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘reproducible-vignette.Rmd’ using rmarkdown
Quitting from lines 102-104 (reproducible-vignette.Rmd)
Error: processing vignette 'reproducible-vignette.Rmd' failed with diagnostics:
attempt to select less than one element in integerOneIndex
--- failed re-building ‘reproducible-vignette.Rmd’
SUMMARY: processing the following file failed:
‘reproducible-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'reproducible-vignette.Rmd' using rmarkdown
Quitting from lines 102-104 (reproducible-vignette.Rmd)
Error: processing vignette 'reproducible-vignette.Rmd' failed with diagnostics:
attempt to select less than one element in integerOneIndex
--- failed re-building 'reproducible-vignette.Rmd'
SUMMARY: processing the following file failed:
'reproducible-vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64