Last updated on 2022-01-06 15:51:22 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.2 | 21.88 | 191.05 | 212.93 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 17.90 | 140.36 | 158.26 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 258.82 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 260.37 | ERROR | |||
| r-devel-windows-x86_64-new-UL | 0.1.2 | 90.00 | 205.00 | 295.00 | ERROR | |
| r-devel-windows-x86_64-new-TK | 0.1.2 | ERROR | ||||
| r-patched-linux-x86_64 | 0.1.2 | 20.39 | 234.56 | 254.95 | OK | |
| r-release-linux-x86_64 | 0.1.2 | 21.62 | 232.94 | 254.56 | OK | |
| r-release-macos-arm64 | 0.1.2 | OK | ||||
| r-release-macos-x86_64 | 0.1.2 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.1.2 | 44.00 | 265.00 | 309.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.2 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.2 | 45.00 | 267.00 | 312.00 | OK |
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in 'joineRmeta-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fixef.jointmeta1
> ### Title: Extract fixed effects
> ### Aliases: fixef.jointmeta1
>
> ### ** Examples
>
> #change example data to jointdata object
> jointdat2<-tojointdata(longitudinal = simdat2$longitudinal,
+ survival = simdat2$survival, id = 'id',longoutcome = 'Y',
+ timevarying = c('time','ltime'),
+ survtime = 'survtime', cens = 'cens',time = 'time')
>
> #set variables to factors
> jointdat2$baseline$study <- as.factor(jointdat2$baseline$study)
> jointdat2$baseline$treat <- as.factor(jointdat2$baseline$treat)
>
> #fit multi-study joint model
> #note: for demonstration purposes only - max.it restricted to 2
> #model would need more iterations to truely converge
> onestagefit<-jointmeta1(data = jointdat2, long.formula = Y ~ 1 + time +
+ + treat + study, long.rand.ind = c('int'),
+ long.rand.stud = c('treat'),
+ sharingstrct = 'randprop',
+ surv.formula = Surv(survtime, cens) ~ treat,
+ study.name = 'study', strat = TRUE, max.it = 2)
Running EM algorithm...
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
Consider formula(paste(x, collapse = " ")) instead.
[1] "Not converged"
Calculating log-likelihood...
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
Consider formula(paste(x, collapse = " ")) instead.
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>
> #extract longitudinal fixed effects
> fixef(onestagefit, type = 'Longitudinal')
Error in as.vector(fixef.long)[, 1] : incorrect number of dimensions
Calls: fixef -> fixef.jointmeta1
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'joineRmeta.Rmd' using rmarkdown
Loading 'meta' package (version 5.1-1).
Type 'help(meta)' for a brief overview.
Readers of 'Meta-Analysis with R (Use R!)' should install
older version of 'meta' package: https://tinyurl.com/dt4y5drs
Quitting from lines 569-570 (joineRmeta.Rmd)
Error: processing vignette 'joineRmeta.Rmd' failed with diagnostics:
incorrect number of dimensions
--- failed re-building 'joineRmeta.Rmd'
SUMMARY: processing the following file failed:
'joineRmeta.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.2
Check: examples
Result: ERROR
Running examples in ‘joineRmeta-Ex.R’ failed
The error most likely occurred in:
> ### Name: fixef.jointmeta1
> ### Title: Extract fixed effects
> ### Aliases: fixef.jointmeta1
>
> ### ** Examples
>
> #change example data to jointdata object
> jointdat2<-tojointdata(longitudinal = simdat2$longitudinal,
+ survival = simdat2$survival, id = 'id',longoutcome = 'Y',
+ timevarying = c('time','ltime'),
+ survtime = 'survtime', cens = 'cens',time = 'time')
>
> #set variables to factors
> jointdat2$baseline$study <- as.factor(jointdat2$baseline$study)
> jointdat2$baseline$treat <- as.factor(jointdat2$baseline$treat)
>
> #fit multi-study joint model
> #note: for demonstration purposes only - max.it restricted to 2
> #model would need more iterations to truely converge
> onestagefit<-jointmeta1(data = jointdat2, long.formula = Y ~ 1 + time +
+ + treat + study, long.rand.ind = c('int'),
+ long.rand.stud = c('treat'),
+ sharingstrct = 'randprop',
+ surv.formula = Surv(survtime, cens) ~ treat,
+ study.name = 'study', strat = TRUE, max.it = 2)
Running EM algorithm...
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
Consider formula(paste(x, collapse = " ")) instead.
[1] "Not converged"
Calculating log-likelihood...
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
Consider formula(paste(x, collapse = " ")) instead.
Warning: Using formula(x) is deprecated when x is a character vector of length > 1.
Consider formula(paste(x, collapse = " ")) instead.
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>
> #extract longitudinal fixed effects
> fixef(onestagefit, type = 'Longitudinal')
Error in as.vector(fixef.long)[, 1] : incorrect number of dimensions
Calls: fixef -> fixef.jointmeta1
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK
Version: 0.1.2
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘joineRmeta.Rmd’ using rmarkdown
Loading 'meta' package (version 5.1-1).
Type 'help(meta)' for a brief overview.
Readers of 'Meta-Analysis with R (Use R!)' should install
older version of 'meta' package: https://tinyurl.com/dt4y5drs
Quitting from lines 569-570 (joineRmeta.Rmd)
Error: processing vignette 'joineRmeta.Rmd' failed with diagnostics:
incorrect number of dimensions
--- failed re-building ‘joineRmeta.Rmd’
SUMMARY: processing the following file failed:
‘joineRmeta.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK