Last updated on 2022-01-06 15:51:27 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.1.0 | 30.56 | 276.83 | 307.39 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 3.1.0 | 26.40 | 209.59 | 235.99 | WARN | |
| r-devel-linux-x86_64-fedora-clang | 3.1.0 | 366.28 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 3.1.0 | 361.12 | WARN | |||
| r-devel-windows-x86_64-new-UL | 3.1.0 | 37.00 | 247.00 | 284.00 | WARN | |
| r-devel-windows-x86_64-new-TK | 3.1.0 | WARN | ||||
| r-patched-linux-x86_64 | 3.1.0 | 30.02 | 309.39 | 339.41 | NOTE | |
| r-release-linux-x86_64 | 3.1.0 | 23.69 | 310.77 | 334.46 | NOTE | |
| r-release-macos-arm64 | 3.1.0 | OK | ||||
| r-release-macos-x86_64 | 3.1.0 | OK | ||||
| r-release-windows-ix86+x86_64 | 3.1.0 | 61.00 | 283.00 | 344.00 | OK | |
| r-oldrel-macos-x86_64 | 3.1.0 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 3.1.0 | 62.00 | 282.00 | 344.00 | OK |
Version: 3.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building 'my-vignette.Rmd' using rmarkdown
Loading required package: impute
Loading required package: pcaMethods
Loading required package: Biobase
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'pcaMethods'
The following object is masked from 'package:stats':
loadings
Loading required package: xlsx
Quitting from lines 47-55 (my-vignette.Rmd)
Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
non-numeric matrix extent
--- failed re-building 'my-vignette.Rmd'
SUMMARY: processing the following file failed:
'my-vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 3.1.0
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'AbsorbedDrugMetabolites' 'CorrelationResults'
'EndogenousMetabolites' 'HeatMap' 'PKresults'
'SecondAbsorbedMetabolites' 'preprocessed-data'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 3.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘my-vignette.Rmd’ using rmarkdown
Loading required package: impute
Loading required package: pcaMethods
Loading required package: Biobase
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'pcaMethods'
The following object is masked from 'package:stats':
loadings
Loading required package: xlsx
Quitting from lines 47-55 (my-vignette.Rmd)
Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
non-numeric matrix extent
--- failed re-building ‘my-vignette.Rmd’
SUMMARY: processing the following file failed:
‘my-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-TK
Version: 3.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building 'my-vignette.Rmd' using rmarkdown
Loading required package: impute
Loading required package: pcaMethods
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Attaching package: 'pcaMethods'
The following object is masked from 'package:stats':
loadings
Loading required package: xlsx
Quitting from lines 47-55 (my-vignette.Rmd)
Error: processing vignette 'my-vignette.Rmd' failed with diagnostics:
non-numeric matrix extent
--- failed re-building 'my-vignette.Rmd'
SUMMARY: processing the following file failed:
'my-vignette.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64-new-UL