CRAN Package Check Results for Package themetagenomics

Last updated on 2022-01-16 06:49:05 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.0.2 37.71 375.28 412.99 OK
r-devel-linux-x86_64-debian-gcc 1.0.2 31.53 239.44 270.97 WARN
r-devel-linux-x86_64-fedora-clang 1.0.2 590.10 NOTE
r-devel-linux-x86_64-fedora-gcc 1.0.2 366.07 OK
r-devel-windows-x86_64-new-UL 1.0.2 36.00 411.00 447.00 OK
r-devel-windows-x86_64-new-TK 1.0.2 ERROR
r-patched-linux-x86_64 1.0.2 37.94 372.01 409.95 OK
r-release-linux-x86_64 1.0.2 OK
r-release-macos-arm64 1.0.2 OK
r-release-macos-x86_64 1.0.2 OK
r-release-windows-ix86+x86_64 1.0.2 91.00 552.00 643.00 NOTE
r-oldrel-macos-x86_64 1.0.2 OK
r-oldrel-windows-ix86+x86_64 1.0.2 92.00 556.00 648.00 NOTE

Check Details

Version: 1.0.2
Check: re-building of vignette outputs
Result: WARN
    Error(s) in re-building vignettes:
     ...
    --- re-building ‘functional_prediction.Rmd’ using rmarkdown
    Quitting from lines 37-39 (functional_prediction.Rmd)
    Error: processing vignette ‘functional_prediction.Rmd’ failed with diagnostics:
    download from ‘https://gitlab.com/sw1/themetagenomics_data/raw/master/ko_13_5_precalculated.tab.gz’ failed
    --- failed re-building ‘functional_prediction.Rmd’
    
    --- re-building ‘thematic_structure.Rmd’ using rmarkdown
    --- finished re-building ‘thematic_structure.Rmd’
    
    SUMMARY: processing the following file failed:
     ‘functional_prediction.Rmd’
    
    Error: Vignette re-building failed.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.2
Check: Rd cross-references
Result: NOTE
    Undeclared package ‘glmnet’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.2
Check: package dependencies
Result: ERROR
    Package required but not available: 'lme4'
    
    See section 'The DESCRIPTION file' in the 'Writing R Extensions'
    manual.
Flavor: r-devel-windows-x86_64-new-TK

Version: 1.0.2
Check: installed package size
Result: NOTE
     installed size is 5.0Mb
     sub-directories of 1Mb or more:
     doc 1.0Mb
     libs 2.2Mb
     references 1.1Mb
Flavors: r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64