Last updated on 2022-01-23 16:50:42 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3 | 6.39 | 56.38 | 62.77 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3 | 4.18 | 43.01 | 47.19 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3 | 70.16 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.3 | 63.76 | OK | |||
| r-devel-windows-x86_64-new-UL | 0.1.3 | 49.00 | 86.00 | 135.00 | ERROR | |
| r-devel-windows-x86_64-new-TK | 0.1.3 | ERROR | ||||
| r-patched-linux-x86_64 | 0.1.3 | 5.27 | 48.87 | 54.14 | ERROR | |
| r-release-linux-x86_64 | 0.1.3 | 4.58 | 49.55 | 54.13 | ERROR | |
| r-release-macos-arm64 | 0.1.3 | OK | ||||
| r-release-macos-x86_64 | 0.1.3 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.1.3 | 10.00 | 80.00 | 90.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.3 | 10.00 | 77.00 | 87.00 | OK |
Version: 0.1.3
Check: examples
Result: ERROR
Running examples in ‘disprose-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: count_PhCh
> ### Title: Calculate physical and chemical properties
> ### Aliases: count_PhCh count_GC count_REP count_MFE count_TM
>
> ### ** Examples
>
> probes <- data.frame (ids = 1:3, probes = c ("acacacacacaca", "aaaaagggggtttttccccc",
+ "atgcgctagctcagc"))
> probes <- count_GC (probe.var = probes$probes, trim.gc = FALSE, GCmin = 40, GCmax = 60,
+ add.to.data = TRUE, data = probes)
>
> probes <- count_REP (probe.var = probes$probes, trim.rep = FALSE, n.crit = 5,
+ add.to.data = TRUE, data = probes)
> ## Not run:
> ##D # This function is using ViennaRNA service. ViennaRNA Package must be installed.
> ##D MFE.files.dir <- tempdir()
> ##D probes <- count_MFE (probe.var = probes$probes, RNAfold.path = "D:/Vienna/RNAfold.exe",
> ##D temperature = 40, trim.mfe = FALSE, MFEmin = 0,
> ##D MFE.files.dir = MFE.files.dir, delete.MFE.files = TRUE,
> ##D add.to.data = TRUE, data = probes, mc.cores = 1)
> ##D unlink (MFE.files.dir, recursive = TRUE)
> ## End(Not run)
> probes <- count_TM (probe.var = probes$probes, TD.params = NULL, trim.tm = FALSE,
+ TMmin = 55, TMmax = 60, add.to.data = TRUE, data = probes,
+ digits = 4, mc.cores = 1)
Setting thermodynamic parameters. Default is: nn_table = DNA_NN4, tmm_table = DNA_TMM1,imm_table = DNA_IMM1, de_table = DNA_DE1
Error in salt_correction(Na = Na, K = K, Tris = Tris, Mg = Mg, dNTPs = dNTPs, :
total ion concentration of zero is not allowed in this method
Calls: count_TM ... <Anonymous> -> lapply -> FUN -> <Anonymous> -> salt_correction
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.1.3
Check: examples
Result: ERROR
Running examples in ‘disprose-Ex.R’ failed
The error most likely occurred in:
> ### Name: count_PhCh
> ### Title: Calculate physical and chemical properties
> ### Aliases: count_PhCh count_GC count_REP count_MFE count_TM
>
> ### ** Examples
>
> probes <- data.frame (ids = 1:3, probes = c ("acacacacacaca", "aaaaagggggtttttccccc",
+ "atgcgctagctcagc"))
> probes <- count_GC (probe.var = probes$probes, trim.gc = FALSE, GCmin = 40, GCmax = 60,
+ add.to.data = TRUE, data = probes)
>
> probes <- count_REP (probe.var = probes$probes, trim.rep = FALSE, n.crit = 5,
+ add.to.data = TRUE, data = probes)
> ## Not run:
> ##D # This function is using ViennaRNA service. ViennaRNA Package must be installed.
> ##D MFE.files.dir <- tempdir()
> ##D probes <- count_MFE (probe.var = probes$probes, RNAfold.path = "D:/Vienna/RNAfold.exe",
> ##D temperature = 40, trim.mfe = FALSE, MFEmin = 0,
> ##D MFE.files.dir = MFE.files.dir, delete.MFE.files = TRUE,
> ##D add.to.data = TRUE, data = probes, mc.cores = 1)
> ##D unlink (MFE.files.dir, recursive = TRUE)
> ## End(Not run)
> probes <- count_TM (probe.var = probes$probes, TD.params = NULL, trim.tm = FALSE,
+ TMmin = 55, TMmax = 60, add.to.data = TRUE, data = probes,
+ digits = 4, mc.cores = 1)
Setting thermodynamic parameters. Default is: nn_table = DNA_NN4, tmm_table = DNA_TMM1,imm_table = DNA_IMM1, de_table = DNA_DE1
Error in salt_correction(Na = Na, K = K, Tris = Tris, Mg = Mg, dNTPs = dNTPs, :
total ion concentration of zero is not allowed in this method
Calls: count_TM ... <Anonymous> -> lapply -> FUN -> <Anonymous> -> salt_correction
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK