Last updated on 2022-02-02 09:49:50 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.9 | 69.70 | 424.06 | 493.76 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.3.9 | 48.76 | 308.89 | 357.65 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.9 | 583.02 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3.9 | 585.42 | ERROR | |||
| r-devel-windows-x86_64-new-UL | 0.3.9 | 146.00 | 408.00 | 554.00 | ERROR | |
| r-devel-windows-x86_64-new-TK | 0.3.9 | ERROR | ||||
| r-patched-linux-x86_64 | 0.3.9 | 58.98 | 401.66 | 460.64 | OK | |
| r-release-linux-x86_64 | 0.3.9 | 52.72 | 400.22 | 452.94 | OK | |
| r-release-macos-arm64 | 0.3.9 | OK | ||||
| r-release-macos-x86_64 | 0.3.9 | OK | ||||
| r-release-windows-ix86+x86_64 | 0.3.9 | 139.00 | 669.00 | 808.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.9 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.3.9 | 142.00 | 690.00 | 832.00 | OK |
Version: 0.3.9
Check: examples
Result: ERROR
Running examples in 'SpaDES.tools-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: spread2
> ### Title: Simulate a contagious spread process on a landscape, with
> ### data.table internals
> ### Aliases: spread2
>
> ### ** Examples
>
> library(data.table)
> library(raster)
Loading required package: sp
> library(quickPlot)
>
> data.table::setDTthreads(1)
>
> a <- raster(extent(0, 10, 0, 10), res = 1)
> sams <- sort(sample(ncell(a), 3))
>
> # Simple use -- similar to spread(...)
> out <- spread2(a, start = sams, 0.225)
> if (interactive()) {
+ clearPlot()
+ Plot(out)
+ }
>
> # Use maxSize -- this gives an upper limit
> maxSizes <- sort(sample(1:10, size = length(sams)))
> out <- spread2(a, start = sams, 0.225, maxSize = maxSizes, asRaster = FALSE)
Error: $ operator is invalid for atomic vectors
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.9
Check: tests
Result: ERROR
Running 'test-all.R' [70s/90s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
> library(testthat)
> test_check("SpaDES.tools")
Loading required package: SpaDES.tools
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 778 ]
== Skipped tests ===============================================================
* DEoptim within spread2 (1)
* On CRAN (3)
* dqrnq cannot be loaded (2)
* empty test (1)
== Failed tests ================================================================
-- Error (test-spread2.R:57:5): spread2 tests ----------------------------------
Error: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-SpaDES.tools::spread2(...) at test-spread2.R:57:4
2. +-dt[-dt1a$omit]
3. \-data.table:::`[.data.table`(dt, -dt1a$omit)
4. \-base::tryCatch(...)
5. \-base tryCatchList(expr, classes, parentenv, handlers)
6. \-base tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. \-value[[3L]](cond)
8. \-data.table:::.checkTypos(e, names_x)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 778 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.9
Check: tests
Result: ERROR
Running ‘test-all.R’ [50s/94s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check("SpaDES.tools")
Loading required package: SpaDES.tools
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 778 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• DEoptim within spread2 (1)
• On CRAN (3)
• dqrnq cannot be loaded (2)
• empty test (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-spread2.R:57:5): spread2 tests ──────────────────────────────────
Error: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─SpaDES.tools::spread2(...) at test-spread2.R:57:4
2. ├─dt[-dt1a$omit]
3. └─data.table:::`[.data.table`(dt, -dt1a$omit)
4. └─base::tryCatch(...)
5. └─base tryCatchList(expr, classes, parentenv, handlers)
6. └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
8. └─data.table:::.checkTypos(e, names_x)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 778 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.9
Check: examples
Result: ERROR
Running examples in ‘SpaDES.tools-Ex.R’ failed
The error most likely occurred in:
> ### Name: spread2
> ### Title: Simulate a contagious spread process on a landscape, with
> ### data.table internals
> ### Aliases: spread2
>
> ### ** Examples
>
> library(data.table)
> library(raster)
Loading required package: sp
> library(quickPlot)
>
> data.table::setDTthreads(1)
>
> a <- raster(extent(0, 10, 0, 10), res = 1)
> sams <- sort(sample(ncell(a), 3))
>
> # Simple use -- similar to spread(...)
> out <- spread2(a, start = sams, 0.225)
> if (interactive()) {
+ clearPlot()
+ Plot(out)
+ }
>
> # Use maxSize -- this gives an upper limit
> maxSizes <- sort(sample(1:10, size = length(sams)))
> out <- spread2(a, start = sams, 0.225, maxSize = maxSizes, asRaster = FALSE)
Error: $ operator is invalid for atomic vectors
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK
Version: 0.3.9
Check: tests
Result: ERROR
Running ‘test-all.R’ [79s/101s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check("SpaDES.tools")
Loading required package: SpaDES.tools
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 778 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• DEoptim within spread2 (1)
• On CRAN (3)
• dqrnq cannot be loaded (2)
• empty test (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-spread2.R:57:5): spread2 tests ──────────────────────────────────
Error: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─SpaDES.tools::spread2(...) at test-spread2.R:57:4
2. ├─dt[-dt1a$omit]
3. └─data.table:::`[.data.table`(dt, -dt1a$omit)
4. └─base::tryCatch(...)
5. └─base tryCatchList(expr, classes, parentenv, handlers)
6. └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
8. └─data.table:::.checkTypos(e, names_x)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 778 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.9
Check: tests
Result: ERROR
Running ‘test-all.R’ [81s/103s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check("SpaDES.tools")
Loading required package: SpaDES.tools
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 778 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• DEoptim within spread2 (1)
• On CRAN (3)
• dqrnq cannot be loaded (2)
• empty test (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-spread2.R:57:5): spread2 tests ──────────────────────────────────
Error: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─SpaDES.tools::spread2(...) at test-spread2.R:57:4
2. ├─dt[-dt1a$omit]
3. └─data.table:::`[.data.table`(dt, -dt1a$omit)
4. └─base::tryCatch(...)
5. └─base tryCatchList(expr, classes, parentenv, handlers)
6. └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
8. └─data.table:::.checkTypos(e, names_x)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 778 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.3.9
Check: tests
Result: ERROR
Running 'test-all.R' [59s]
Running the tests in 'tests/test-all.R' failed.
Complete output:
> library(testthat)
> test_check("SpaDES.tools")
Loading required package: SpaDES.tools
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 778 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• DEoptim within spread2 (1)
• On CRAN (3)
• dqrnq cannot be loaded (2)
• empty test (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-spread2.R:57:5): spread2 tests ──────────────────────────────────
Error: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─SpaDES.tools::spread2(...) at test-spread2.R:57:4
2. ├─dt[-dt1a$omit]
3. └─data.table:::`[.data.table`(dt, -dt1a$omit)
4. └─base::tryCatch(...)
5. └─base tryCatchList(expr, classes, parentenv, handlers)
6. └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
8. └─data.table:::.checkTypos(e, names_x)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 778 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64-new-UL
Version: 0.3.9
Check: tests
Result: ERROR
Running 'test-all.R'
Running the tests in 'tests/test-all.R' failed.
Complete output:
> library(testthat)
> test_check("SpaDES.tools")
Loading required package: SpaDES.tools
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 778 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• DEoptim within spread2 (1)
• On CRAN (3)
• dqrnq cannot be loaded (2)
• empty test (1)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-spread2.R:57:5): spread2 tests ──────────────────────────────────
Error: $ operator is invalid for atomic vectors
Backtrace:
▆
1. └─SpaDES.tools::spread2(...) at test-spread2.R:57:4
2. ├─dt[-dt1a$omit]
3. └─data.table:::`[.data.table`(dt, -dt1a$omit)
4. └─base::tryCatch(...)
5. └─base tryCatchList(expr, classes, parentenv, handlers)
6. └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
7. └─value[[3L]](cond)
8. └─data.table:::.checkTypos(e, names_x)
[ FAIL 1 | WARN 0 | SKIP 7 | PASS 778 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64-new-TK