Last updated on 2022-02-03 18:49:19 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0 | 7.43 | 72.40 | 79.83 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0 | 6.40 | 55.25 | 61.65 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0 | 90.14 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0 | 77.82 | ERROR | |||
| r-devel-windows-x86_64-new-UL | 1.0 | 30.00 | 95.00 | 125.00 | NOTE | |
| r-devel-windows-x86_64-new-TK | 1.0 | NOTE | ||||
| r-patched-linux-x86_64 | 1.0 | 8.18 | 66.20 | 74.38 | NOTE | |
| r-release-linux-x86_64 | 1.0 | 7.46 | 66.36 | 73.82 | NOTE | |
| r-release-macos-arm64 | 1.0 | NOTE | ||||
| r-release-macos-x86_64 | 1.0 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.0 | 17.00 | 79.00 | 96.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.0 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.0 | 16.00 | 81.00 | 97.00 | NOTE |
Version: 1.0
Check: dependencies in R code
Result: NOTE
Packages in Depends field not imported from:
'gbm' 'glmnet' 'randomForest' 'tree'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0
Check: R code for possible problems
Result: NOTE
LDCAEst: no visible global function definition for 'glmnet'
cv.LDCA: no visible global function definition for 'cv.glmnet'
predict.LDCA: no visible global function definition for 'predict'
predict.cv.LDCA: no visible global function definition for 'predict'
predict.tsp.gbm: no visible global function definition for 'predict'
predict.tsp.randomForest: no visible global function definition for
'predict'
predict.tsp.tree: no visible global function definition for 'predict'
tsp.gbm: no visible global function definition for 'gbm.fit'
tsp.randomForest: no visible global function definition for
'randomForest'
tsp.tree: no visible global function definition for 'tree.control'
tsp.tree: no visible global function definition for 'tree'
Undefined global functions or variables:
cv.glmnet gbm.fit glmnet predict randomForest tree tree.control
Consider adding
importFrom("stats", "predict")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0
Check: Rd line widths
Result: NOTE
Rd file 'predict.LDCA.Rd':
\usage lines wider than 90 characters:
predict(object, newx, s = NULL, type = c("link", "response", "coefficients", "nonzero", "class"), exact = FALSE, offset, ...)
Rd file 'predict.tsp.randomForest.Rd':
\usage lines wider than 90 characters:
predict(object, newdata, type = "response", norm.votes = TRUE, predict.all = FALSE, proximity = FALSE, nodes = FALSE, cutoff, ...)
Rd file 'predict.tsp.tree.Rd':
\usage lines wider than 90 characters:
predict(object, newdata, type = c("vector", "tree", "class", "where"), split = FALSE, nwts, eps = 0.001, ...)
Rd file 'tsp.gbm.Rd':
\usage lines wider than 90 characters:
tsp.gbm(x, y, offset = NULL, misc = NULL, distribution = "bernoulli", w = NULL, var.monotone = NULL, n.trees = 100, interaction.depth = ... [TRUNCATED]
Rd file 'tsp.randomForest.Rd':
\usage lines wider than 90 characters:
tsp.randomForest(x, y = NULL, xtest = NULL, ytest = NULL, ntree = 500, type = "classification", mtry = if (!is.null(y) && !is.factor(y) ... [TRUNCATED]
Rd file 'tsp.tree.Rd':
\usage lines wider than 90 characters:
tsp.tree(X, response, control = tree.control(dim(X)[1], ...), method = "recursive.partition", split = c("deviance", "gini"), x = FALSE, ... [TRUNCATED]
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0
Check: examples
Result: ERROR
Running examples in ‘BigTSP-Ex.R’ failed
The error most likely occurred in:
> ### Name: predict.tsp.randomForest
> ### Title: prediction function for tsp.randomForest
> ### Aliases: predict.tsp.randomForest
>
> ### ** Examples
>
> library(randomForest)
> x=matrix(rnorm(100*20),100,20)
> y=rbinom(100,1,0.5)
> y=as.factor(y)
> fit=tsp.randomForest(x,y)
Error in randomForest(newx, y = y, xtest = xtest, ytest = ytest, ntree = ntree, :
argument "cutoff" is missing, with no default
Calls: tsp.randomForest -> randomForest -> randomForest.default
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc