CRAN Package Check Results for Package fssemR

Last updated on 2022-02-04 04:51:17 CET.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	0.1.6	50.72	149.04	199.76	ERROR
r-devel-linux-x86_64-debian-gcc	0.1.6	36.81	112.66	149.47	ERROR
r-devel-linux-x86_64-fedora-clang	0.1.6			249.74	ERROR
r-devel-linux-x86_64-fedora-gcc	0.1.6			232.62	ERROR
r-devel-windows-x86_64-new-UL	0.1.6	68.00	207.00	275.00	ERROR
r-devel-windows-x86_64-new-TK	0.1.6				ERROR
r-patched-linux-x86_64	0.1.6	39.51	158.43	197.94	NOTE
r-release-linux-x86_64	0.1.6	38.10	158.15	196.25	NOTE
r-release-macos-arm64	0.1.6				NOTE
r-release-macos-x86_64	0.1.6				NOTE
r-release-windows-ix86+x86_64	0.1.6	93.00	257.00	350.00	NOTE
r-oldrel-macos-x86_64	0.1.6				NOTE
r-oldrel-windows-ix86+x86_64	0.1.6	94.00	247.00	341.00	OK

Check Details

Version: 0.1.6
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64

Version: 0.1.6
Check: examples
Result: ERROR
    Running examples in 'fssemR-Ex.R' failed
    The error most likely occurred in:

    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: multiFSSEMiPALM
    > ### Title: multiFSSEMiPALM
    > ### Aliases: multiFSSEMiPALM
    >
    > ### ** Examples
    >
    > seed = 1234
    > N = 100 # sample size
    > Ng = 5 # gene number
    > Nk = 5 * 3 # eQTL number
    > Ns = 1 # sparse ratio
    > sigma2 = 0.01 # sigma2
    > set.seed(seed)
    > library(fssemR)
    > data = randomFSSEMdata(n = N, p = Ng, k = Nk, sparse = Ns, df = 0.3, sigma2 = sigma2,
    + u = 5, type = "DG", nhub = 1, dag = TRUE)
    > ## If we assume that different condition has different genetics perturbations (eQTLs)
    > ## gamma = cv.multiRegression(data$Data$X, data$Data$Y, data$Data$Sk, ngamma = 20, nfold = 5,
    > ## N, Ng, Nk)
    > gamma = 0.6784248 ## optimal gamma computed by cv.multiRegression
    > fit = multiRegression(data$Data$X, data$Data$Y, data$Data$Sk, gamma, N, Ng, Nk,
    + trans = FALSE)
    > Xs = data$Data$X
    > Ys = data$Data$Y
    > Sk = data$Data$Sk
    >
    >
    > cvfitc <- cv.multiFSSEMiPALM(Xs = Xs, Ys = Ys, Bs = fit$Bs, Fs = fit$Fs, Sk = Sk,
    + sigma2 = fit$sigma2, nlambda = 5, nrho = 5,
    + nfold = 5, p = Ng, q = Nk, wt = TRUE)
    Error in sample.int(length(x), size, replace, prob) :
     invalid 'size' argument
    Calls: cv.multiFSSEMiPALM -> sample -> sample.int
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc

Version: 0.1.6
Check: installed package size
Result: NOTE
     installed size is 13.1Mb
     sub-directories of 1Mb or more:
     libs 12.4Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-x86_64

Version: 0.1.6
Check: examples
Result: ERROR
    Running examples in ‘fssemR-Ex.R’ failed
    The error most likely occurred in:

    > ### Name: multiFSSEMiPALM
    > ### Title: multiFSSEMiPALM
    > ### Aliases: multiFSSEMiPALM
    >
    > ### ** Examples
    >
    > seed = 1234
    > N = 100 # sample size
    > Ng = 5 # gene number
    > Nk = 5 * 3 # eQTL number
    > Ns = 1 # sparse ratio
    > sigma2 = 0.01 # sigma2
    > set.seed(seed)
    > library(fssemR)
    > data = randomFSSEMdata(n = N, p = Ng, k = Nk, sparse = Ns, df = 0.3, sigma2 = sigma2,
    + u = 5, type = "DG", nhub = 1, dag = TRUE)
    > ## If we assume that different condition has different genetics perturbations (eQTLs)
    > ## gamma = cv.multiRegression(data$Data$X, data$Data$Y, data$Data$Sk, ngamma = 20, nfold = 5,
    > ## N, Ng, Nk)
    > gamma = 0.6784248 ## optimal gamma computed by cv.multiRegression
    > fit = multiRegression(data$Data$X, data$Data$Y, data$Data$Sk, gamma, N, Ng, Nk,
    + trans = FALSE)
    > Xs = data$Data$X
    > Ys = data$Data$Y
    > Sk = data$Data$Sk
    >
    >
    > cvfitc <- cv.multiFSSEMiPALM(Xs = Xs, Ys = Ys, Bs = fit$Bs, Fs = fit$Fs, Sk = Sk,
    + sigma2 = fit$sigma2, nlambda = 5, nrho = 5,
    + nfold = 5, p = Ng, q = Nk, wt = TRUE)
    Error in sample.int(length(x), size, replace, prob) :
     invalid 'size' argument
    Calls: cv.multiFSSEMiPALM -> sample -> sample.int
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK