Last updated on 2022-03-05 09:51:40 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.1 | 8.00 | 224.94 | 232.94 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.3.1 | 7.85 | 155.53 | 163.38 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.3.1 | 271.79 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.1 | 259.95 | ERROR | |||
| r-devel-windows-x86_64-new-UL | 1.3.1 | 51.00 | 236.00 | 287.00 | ERROR | |
| r-devel-windows-x86_64-new-TK | 1.3.1 | ERROR | ||||
| r-patched-linux-x86_64 | 1.3.1 | 14.39 | 210.14 | 224.53 | ERROR | |
| r-release-linux-x86_64 | 1.3.1 | 6.73 | 206.81 | 213.54 | ERROR | |
| r-release-macos-arm64 | 1.3.1 | OK | ||||
| r-release-macos-x86_64 | 1.3.1 | OK | ||||
| r-release-windows-ix86+x86_64 | 1.3.1 | 16.00 | 240.00 | 256.00 | ERROR | |
| r-oldrel-macos-x86_64 | 1.3.1 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 1.3.1 | 17.00 | 251.00 | 268.00 | ERROR |
Version: 1.3.1
Check: dependencies in R code
Result: WARN
Missing or unexported objects:
'spatstat.core::rpoint' 'spatstat.core::runifpoint'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-windows-ix86+x86_64
Version: 1.3.1
Check: examples
Result: ERROR
Running examples in 'shar-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: calculate_energy
> ### Title: calculate_energy
> ### Aliases: calculate_energy
>
> ### ** Examples
>
> pattern_random <- fit_point_process(species_a, n_random = 19)
Warning: Unmarked provided input pattern.
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.3.1
Check: tests
Result: ERROR
Running 'testthat.R' [106s/133s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(shar)
> library(spatstat.core)
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 2.3-2
Loading required package: spatstat.random
spatstat.random 2.1-0
Loading required package: nlme
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: rpart
spatstat.core 2.4-0
> library(testthat)
Attaching package: 'testthat'
The following object is masked from 'package:dplyr':
matches
>
> test_check("shar")
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
== Failed tests ================================================================
-- Error (test-calculate_energy.R:3:1): (code run outside of `test_that()`) ----
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(pattern = species_a, n_random = 3, verbose = FALSE) at test-calculate_energy.R:3:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
-- Error (test-fit-point_process.R:4:1): (code run outside of `test_that()`) ---
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(pattern = species_b, n_random = 3, verbose = FALSE) at test-fit-point_process.R:4:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
-- Error (test-list_to_randomized.R:3:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-base::lapply(...) at test-list_to_randomized.R:3:0
2. \-shar FUN(X[[i]], ...)
3. \-shar::fit_point_process(...) at test-list_to_randomized.R:4:2
4. \-base::lapply(...)
5. \-shar FUN(X[[i]], ...)
-- Error (test-plot_energy.R:3:1): (code run outside of `test_that()`) ---------
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::reconstruct_pattern(...) at test-plot_energy.R:3:0
2. \-shar:::reconstruct_pattern_homo(...)
-- Error (test-plot_rd_pat.R:3:1): (code run outside of `test_that()`) ---------
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(species_a, n_random = 3, verbose = FALSE) at test-plot_rd_pat.R:3:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
-- Error (test-print.R:3:1): (code run outside of `test_that()`) ---------------
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::reconstruct_pattern(...) at test-print.R:3:0
2. \-shar:::reconstruct_pattern_homo(...)
-- Error (test-reconstruct_pattern.R:4:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::reconstruct_pattern(...) at test-reconstruct_pattern.R:4:0
2. \-shar:::reconstruct_pattern_homo(...)
-- Error (test-reconstruct_pattern_cluster.R:4:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar:::reconstruct_pattern_cluster(...) at test-reconstruct_pattern_cluster.R:4:0
-- Error (test-reconstruct_pattern_hetero.R:3:1): (code run outside of `test_that()`) --
Error: 'rpoispp' is not an exported object from 'namespace:spatstat.core'
-- Error (test-reconstruct_pattern_homo.R:4:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_homo.R:4:0
-- Error (test-reconstruct_pattern_marks.R:3:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_marks.R:3:0
-- Error (test-results_habitat_association.R:5:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(...) at test-results_habitat_association.R:5:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
-- Error (test-sample_randomized.R:3:1): (code run outside of `test_that()`) ---
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(species_a, n_random = 9, verbose = FALSE) at test-sample_randomized.R:3:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [68s/103s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(shar)
> library(spatstat.core)
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 2.3-2
Loading required package: spatstat.random
spatstat.random 2.1-0
Loading required package: nlme
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: rpart
spatstat.core 2.4-0
> library(testthat)
Attaching package: 'testthat'
The following object is masked from 'package:dplyr':
matches
>
> test_check("shar")
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-calculate_energy.R:3:1): (code run outside of `test_that()`) ────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(pattern = species_a, n_random = 3, verbose = FALSE) at test-calculate_energy.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-fit-point_process.R:4:1): (code run outside of `test_that()`) ───
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(pattern = species_b, n_random = 3, verbose = FALSE) at test-fit-point_process.R:4:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-list_to_randomized.R:3:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─base::lapply(...) at test-list_to_randomized.R:3:0
2. └─shar FUN(X[[i]], ...)
3. └─shar::fit_point_process(...) at test-list_to_randomized.R:4:2
4. └─base::lapply(...)
5. └─shar FUN(X[[i]], ...)
── Error (test-plot_energy.R:3:1): (code run outside of `test_that()`) ─────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-plot_energy.R:3:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-plot_rd_pat.R:3:1): (code run outside of `test_that()`) ─────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(species_a, n_random = 3, verbose = FALSE) at test-plot_rd_pat.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-print.R:3:1): (code run outside of `test_that()`) ───────────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-print.R:3:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-reconstruct_pattern.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-reconstruct_pattern.R:4:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-reconstruct_pattern_cluster.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_cluster(...) at test-reconstruct_pattern_cluster.R:4:0
── Error (test-reconstruct_pattern_hetero.R:3:1): (code run outside of `test_that()`) ──
Error: 'rpoispp' is not an exported object from 'namespace:spatstat.core'
── Error (test-reconstruct_pattern_homo.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_homo.R:4:0
── Error (test-reconstruct_pattern_marks.R:3:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_marks.R:3:0
── Error (test-results_habitat_association.R:5:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(...) at test-results_habitat_association.R:5:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-sample_randomized.R:3:1): (code run outside of `test_that()`) ───
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(species_a, n_random = 9, verbose = FALSE) at test-sample_randomized.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.3.1
Check: examples
Result: ERROR
Running examples in ‘shar-Ex.R’ failed
The error most likely occurred in:
> ### Name: calculate_energy
> ### Title: calculate_energy
> ### Aliases: calculate_energy
>
> ### ** Examples
>
> pattern_random <- fit_point_process(species_a, n_random = 19)
Warning: Unmarked provided input pattern.
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-release-windows-ix86+x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [118s/153s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(shar)
> library(spatstat.core)
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 2.3-2
Loading required package: spatstat.random
spatstat.random 2.1-0
Loading required package: nlme
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: rpart
spatstat.core 2.4-0
> library(testthat)
Attaching package: 'testthat'
The following object is masked from 'package:dplyr':
matches
>
> test_check("shar")
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-calculate_energy.R:3:1): (code run outside of `test_that()`) ────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(pattern = species_a, n_random = 3, verbose = FALSE) at test-calculate_energy.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-fit-point_process.R:4:1): (code run outside of `test_that()`) ───
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(pattern = species_b, n_random = 3, verbose = FALSE) at test-fit-point_process.R:4:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-list_to_randomized.R:3:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─base::lapply(...) at test-list_to_randomized.R:3:0
2. └─shar FUN(X[[i]], ...)
3. └─shar::fit_point_process(...) at test-list_to_randomized.R:4:2
4. └─base::lapply(...)
5. └─shar FUN(X[[i]], ...)
── Error (test-plot_energy.R:3:1): (code run outside of `test_that()`) ─────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-plot_energy.R:3:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-plot_rd_pat.R:3:1): (code run outside of `test_that()`) ─────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(species_a, n_random = 3, verbose = FALSE) at test-plot_rd_pat.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-print.R:3:1): (code run outside of `test_that()`) ───────────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-print.R:3:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-reconstruct_pattern.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-reconstruct_pattern.R:4:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-reconstruct_pattern_cluster.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_cluster(...) at test-reconstruct_pattern_cluster.R:4:0
── Error (test-reconstruct_pattern_hetero.R:3:1): (code run outside of `test_that()`) ──
Error: 'rpoispp' is not an exported object from 'namespace:spatstat.core'
── Error (test-reconstruct_pattern_homo.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_homo.R:4:0
── Error (test-reconstruct_pattern_marks.R:3:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_marks.R:3:0
── Error (test-results_habitat_association.R:5:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(...) at test-results_habitat_association.R:5:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-sample_randomized.R:3:1): (code run outside of `test_that()`) ───
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(species_a, n_random = 9, verbose = FALSE) at test-sample_randomized.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [119s/138s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(shar)
> library(spatstat.core)
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 2.3-2
Loading required package: spatstat.random
spatstat.random 2.1-0
Loading required package: nlme
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: rpart
spatstat.core 2.4-0
> library(testthat)
Attaching package: 'testthat'
The following object is masked from 'package:dplyr':
matches
>
> test_check("shar")
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-calculate_energy.R:3:1): (code run outside of `test_that()`) ────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(pattern = species_a, n_random = 3, verbose = FALSE) at test-calculate_energy.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-fit-point_process.R:4:1): (code run outside of `test_that()`) ───
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(pattern = species_b, n_random = 3, verbose = FALSE) at test-fit-point_process.R:4:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-list_to_randomized.R:3:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─base::lapply(...) at test-list_to_randomized.R:3:0
2. └─shar FUN(X[[i]], ...)
3. └─shar::fit_point_process(...) at test-list_to_randomized.R:4:2
4. └─base::lapply(...)
5. └─shar FUN(X[[i]], ...)
── Error (test-plot_energy.R:3:1): (code run outside of `test_that()`) ─────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-plot_energy.R:3:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-plot_rd_pat.R:3:1): (code run outside of `test_that()`) ─────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(species_a, n_random = 3, verbose = FALSE) at test-plot_rd_pat.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-print.R:3:1): (code run outside of `test_that()`) ───────────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-print.R:3:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-reconstruct_pattern.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-reconstruct_pattern.R:4:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-reconstruct_pattern_cluster.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_cluster(...) at test-reconstruct_pattern_cluster.R:4:0
── Error (test-reconstruct_pattern_hetero.R:3:1): (code run outside of `test_that()`) ──
Error: 'rpoispp' is not an exported object from 'namespace:spatstat.core'
── Error (test-reconstruct_pattern_homo.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_homo.R:4:0
── Error (test-reconstruct_pattern_marks.R:3:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_marks.R:3:0
── Error (test-results_habitat_association.R:5:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(...) at test-results_habitat_association.R:5:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-sample_randomized.R:3:1): (code run outside of `test_that()`) ───
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(species_a, n_random = 9, verbose = FALSE) at test-sample_randomized.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.3.1
Check: tests
Result: ERROR
Running 'testthat.R' [95s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(shar)
> library(spatstat.core)
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 2.3-2
Loading required package: spatstat.random
spatstat.random 2.1-0
Loading required package: nlme
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: rpart
spatstat.core 2.4-0
> library(testthat)
Attaching package: 'testthat'
The following object is masked from 'package:dplyr':
matches
>
> test_check("shar")
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-calculate_energy.R:3:1): (code run outside of `test_that()`) ────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(pattern = species_a, n_random = 3, verbose = FALSE) at test-calculate_energy.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-fit-point_process.R:4:1): (code run outside of `test_that()`) ───
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(pattern = species_b, n_random = 3, verbose = FALSE) at test-fit-point_process.R:4:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-list_to_randomized.R:3:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─base::lapply(...) at test-list_to_randomized.R:3:0
2. └─shar FUN(X[[i]], ...)
3. └─shar::fit_point_process(...) at test-list_to_randomized.R:4:2
4. └─base::lapply(...)
5. └─shar FUN(X[[i]], ...)
── Error (test-plot_energy.R:3:1): (code run outside of `test_that()`) ─────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-plot_energy.R:3:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-plot_rd_pat.R:3:1): (code run outside of `test_that()`) ─────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(species_a, n_random = 3, verbose = FALSE) at test-plot_rd_pat.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-print.R:3:1): (code run outside of `test_that()`) ───────────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-print.R:3:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-reconstruct_pattern.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-reconstruct_pattern.R:4:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-reconstruct_pattern_cluster.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_cluster(...) at test-reconstruct_pattern_cluster.R:4:0
── Error (test-reconstruct_pattern_hetero.R:3:1): (code run outside of `test_that()`) ──
Error: 'rpoispp' is not an exported object from 'namespace:spatstat.core'
── Error (test-reconstruct_pattern_homo.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_homo.R:4:0
── Error (test-reconstruct_pattern_marks.R:3:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_marks.R:3:0
── Error (test-results_habitat_association.R:5:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(...) at test-results_habitat_association.R:5:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-sample_randomized.R:3:1): (code run outside of `test_that()`) ───
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(species_a, n_random = 9, verbose = FALSE) at test-sample_randomized.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64-new-UL
Version: 1.3.1
Check: tests
Result: ERROR
Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(shar)
> library(spatstat.core)
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 2.3-2
Loading required package: spatstat.random
spatstat.random 2.1-0
Loading required package: nlme
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: rpart
spatstat.core 2.4-0
> library(testthat)
Attaching package: 'testthat'
The following object is masked from 'package:dplyr':
matches
>
> test_check("shar")
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-calculate_energy.R:3:1): (code run outside of `test_that()`) ────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(pattern = species_a, n_random = 3, verbose = FALSE) at test-calculate_energy.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-fit-point_process.R:4:1): (code run outside of `test_that()`) ───
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(pattern = species_b, n_random = 3, verbose = FALSE) at test-fit-point_process.R:4:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-list_to_randomized.R:3:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─base::lapply(...) at test-list_to_randomized.R:3:0
2. └─shar FUN(X[[i]], ...)
3. └─shar::fit_point_process(...) at test-list_to_randomized.R:4:2
4. └─base::lapply(...)
5. └─shar FUN(X[[i]], ...)
── Error (test-plot_energy.R:3:1): (code run outside of `test_that()`) ─────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-plot_energy.R:3:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-plot_rd_pat.R:3:1): (code run outside of `test_that()`) ─────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(species_a, n_random = 3, verbose = FALSE) at test-plot_rd_pat.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-print.R:3:1): (code run outside of `test_that()`) ───────────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-print.R:3:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-reconstruct_pattern.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-reconstruct_pattern.R:4:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-reconstruct_pattern_cluster.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_cluster(...) at test-reconstruct_pattern_cluster.R:4:0
── Error (test-reconstruct_pattern_hetero.R:3:1): (code run outside of `test_that()`) ──
Error: 'rpoispp' is not an exported object from 'namespace:spatstat.core'
── Error (test-reconstruct_pattern_homo.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_homo.R:4:0
── Error (test-reconstruct_pattern_marks.R:3:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_marks.R:3:0
── Error (test-results_habitat_association.R:5:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(...) at test-results_habitat_association.R:5:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-sample_randomized.R:3:1): (code run outside of `test_that()`) ───
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(species_a, n_random = 9, verbose = FALSE) at test-sample_randomized.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64-new-TK
Version: 1.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [99s/116s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(shar)
> library(spatstat.core)
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 2.3-2
Loading required package: spatstat.random
spatstat.random 2.1-0
Loading required package: nlme
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: rpart
spatstat.core 2.4-0
> library(testthat)
Attaching package: 'testthat'
The following object is masked from 'package:dplyr':
matches
>
> test_check("shar")
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-calculate_energy.R:3:1): (code run outside of `test_that()`) ────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(pattern = species_a, n_random = 3, verbose = FALSE) at test-calculate_energy.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-fit-point_process.R:4:1): (code run outside of `test_that()`) ───
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(pattern = species_b, n_random = 3, verbose = FALSE) at test-fit-point_process.R:4:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-list_to_randomized.R:3:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─base::lapply(...) at test-list_to_randomized.R:3:0
2. └─shar FUN(X[[i]], ...)
3. └─shar::fit_point_process(...) at test-list_to_randomized.R:4:2
4. └─base::lapply(...)
5. └─shar FUN(X[[i]], ...)
── Error (test-plot_energy.R:3:1): (code run outside of `test_that()`) ─────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-plot_energy.R:3:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-plot_rd_pat.R:3:1): (code run outside of `test_that()`) ─────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(species_a, n_random = 3, verbose = FALSE) at test-plot_rd_pat.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-print.R:3:1): (code run outside of `test_that()`) ───────────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-print.R:3:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-reconstruct_pattern.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-reconstruct_pattern.R:4:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-reconstruct_pattern_cluster.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_cluster(...) at test-reconstruct_pattern_cluster.R:4:0
── Error (test-reconstruct_pattern_hetero.R:3:1): (code run outside of `test_that()`) ──
Error: 'rpoispp' is not an exported object from 'namespace:spatstat.core'
── Error (test-reconstruct_pattern_homo.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_homo.R:4:0
── Error (test-reconstruct_pattern_marks.R:3:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_marks.R:3:0
── Error (test-results_habitat_association.R:5:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(...) at test-results_habitat_association.R:5:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-sample_randomized.R:3:1): (code run outside of `test_that()`) ───
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(species_a, n_random = 9, verbose = FALSE) at test-sample_randomized.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.3.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [99s/112s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(shar)
> library(spatstat.core)
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 2.3-2
Loading required package: spatstat.random
spatstat.random 2.1-0
Loading required package: nlme
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: rpart
spatstat.core 2.4-0
> library(testthat)
Attaching package: 'testthat'
The following object is masked from 'package:dplyr':
matches
>
> test_check("shar")
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-calculate_energy.R:3:1): (code run outside of `test_that()`) ────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(pattern = species_a, n_random = 3, verbose = FALSE) at test-calculate_energy.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-fit-point_process.R:4:1): (code run outside of `test_that()`) ───
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(pattern = species_b, n_random = 3, verbose = FALSE) at test-fit-point_process.R:4:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-list_to_randomized.R:3:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─base::lapply(...) at test-list_to_randomized.R:3:0
2. └─shar FUN(X[[i]], ...)
3. └─shar::fit_point_process(...) at test-list_to_randomized.R:4:2
4. └─base::lapply(...)
5. └─shar FUN(X[[i]], ...)
── Error (test-plot_energy.R:3:1): (code run outside of `test_that()`) ─────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-plot_energy.R:3:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-plot_rd_pat.R:3:1): (code run outside of `test_that()`) ─────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(species_a, n_random = 3, verbose = FALSE) at test-plot_rd_pat.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-print.R:3:1): (code run outside of `test_that()`) ───────────────
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-print.R:3:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-reconstruct_pattern.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::reconstruct_pattern(...) at test-reconstruct_pattern.R:4:0
2. └─shar:::reconstruct_pattern_homo(...)
── Error (test-reconstruct_pattern_cluster.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_cluster(...) at test-reconstruct_pattern_cluster.R:4:0
── Error (test-reconstruct_pattern_hetero.R:3:1): (code run outside of `test_that()`) ──
Error: 'rpoispp' is not an exported object from 'namespace:spatstat.core'
── Error (test-reconstruct_pattern_homo.R:4:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_homo.R:4:0
── Error (test-reconstruct_pattern_marks.R:3:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_marks.R:3:0
── Error (test-results_habitat_association.R:5:1): (code run outside of `test_that()`) ──
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(...) at test-results_habitat_association.R:5:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
── Error (test-sample_randomized.R:3:1): (code run outside of `test_that()`) ───
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
▆
1. └─shar::fit_point_process(species_a, n_random = 9, verbose = FALSE) at test-sample_randomized.R:3:0
2. └─base::lapply(...)
3. └─shar FUN(X[[i]], ...)
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.3.1
Check: tests
Result: ERROR
Running 'testthat.R' [114s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(shar)
> library(spatstat.core)
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 2.3-2
Loading required package: spatstat.random
spatstat.random 2.1-0
Loading required package: nlme
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: rpart
spatstat.core 2.4-0
> library(testthat)
Attaching package: 'testthat'
The following object is masked from 'package:dplyr':
matches
>
> test_check("shar")
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
== Failed tests ================================================================
-- Error (test-calculate_energy.R:3:1): (code run outside of `test_that()`) ----
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(pattern = species_a, n_random = 3, verbose = FALSE) at test-calculate_energy.R:3:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
-- Error (test-fit-point_process.R:4:1): (code run outside of `test_that()`) ---
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(pattern = species_b, n_random = 3, verbose = FALSE) at test-fit-point_process.R:4:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
-- Error (test-list_to_randomized.R:3:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-base::lapply(...) at test-list_to_randomized.R:3:0
2. \-shar FUN(X[[i]], ...)
3. \-shar::fit_point_process(...) at test-list_to_randomized.R:4:2
4. \-base::lapply(...)
5. \-shar FUN(X[[i]], ...)
-- Error (test-plot_energy.R:3:1): (code run outside of `test_that()`) ---------
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::reconstruct_pattern(...) at test-plot_energy.R:3:0
2. \-shar:::reconstruct_pattern_homo(...)
-- Error (test-plot_rd_pat.R:3:1): (code run outside of `test_that()`) ---------
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(species_a, n_random = 3, verbose = FALSE) at test-plot_rd_pat.R:3:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
-- Error (test-print.R:3:1): (code run outside of `test_that()`) ---------------
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::reconstruct_pattern(...) at test-print.R:3:0
2. \-shar:::reconstruct_pattern_homo(...)
-- Error (test-reconstruct_pattern.R:4:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::reconstruct_pattern(...) at test-reconstruct_pattern.R:4:0
2. \-shar:::reconstruct_pattern_homo(...)
-- Error (test-reconstruct_pattern_cluster.R:4:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar:::reconstruct_pattern_cluster(...) at test-reconstruct_pattern_cluster.R:4:0
-- Error (test-reconstruct_pattern_hetero.R:3:1): (code run outside of `test_that()`) --
Error: 'rpoispp' is not an exported object from 'namespace:spatstat.core'
-- Error (test-reconstruct_pattern_homo.R:4:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_homo.R:4:0
-- Error (test-reconstruct_pattern_marks.R:3:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_marks.R:3:0
-- Error (test-results_habitat_association.R:5:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(...) at test-results_habitat_association.R:5:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
-- Error (test-sample_randomized.R:3:1): (code run outside of `test_that()`) ---
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(species_a, n_random = 9, verbose = FALSE) at test-sample_randomized.R:3:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-ix86+x86_64
Version: 1.3.1
Check: dependencies in R code
Result: NOTE
Missing or unexported objects:
'spatstat.core::rpoint' 'spatstat.core::runifpoint'
Flavor: r-oldrel-windows-ix86+x86_64
Version: 1.3.1
Check: tests
Result: ERROR
Running 'testthat.R' [119s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(shar)
> library(spatstat.core)
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 2.3-2
Loading required package: spatstat.random
spatstat.random 2.1-0
Loading required package: nlme
Attaching package: 'nlme'
The following object is masked from 'package:dplyr':
collapse
Loading required package: rpart
spatstat.core 2.4-0
> library(testthat)
Attaching package: 'testthat'
The following object is masked from 'package:dplyr':
matches
>
> test_check("shar")
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
== Failed tests ================================================================
-- Error (test-calculate_energy.R:3:1): (code run outside of `test_that()`) ----
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(pattern = species_a, n_random = 3, verbose = FALSE) at test-calculate_energy.R:3:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
4. \-spatstat.core::runifpoint
5. \-base::getExportedValue(pkg, name)
-- Error (test-fit-point_process.R:4:1): (code run outside of `test_that()`) ---
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(pattern = species_b, n_random = 3, verbose = FALSE) at test-fit-point_process.R:4:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
4. \-spatstat.core::runifpoint
5. \-base::getExportedValue(pkg, name)
-- Error (test-list_to_randomized.R:3:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-base::lapply(...) at test-list_to_randomized.R:3:0
2. \-shar FUN(X[[i]], ...)
3. \-shar::fit_point_process(...) at test-list_to_randomized.R:4:2
4. \-base::lapply(...)
5. \-shar FUN(X[[i]], ...)
6. \-spatstat.core::runifpoint
7. \-base::getExportedValue(pkg, name)
-- Error (test-plot_energy.R:3:1): (code run outside of `test_that()`) ---------
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::reconstruct_pattern(...) at test-plot_energy.R:3:0
2. \-shar:::reconstruct_pattern_homo(...)
3. \-spatstat.core::runifpoint
4. \-base::getExportedValue(pkg, name)
-- Error (test-plot_rd_pat.R:3:1): (code run outside of `test_that()`) ---------
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(species_a, n_random = 3, verbose = FALSE) at test-plot_rd_pat.R:3:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
4. \-spatstat.core::runifpoint
5. \-base::getExportedValue(pkg, name)
-- Error (test-print.R:3:1): (code run outside of `test_that()`) ---------------
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::reconstruct_pattern(...) at test-print.R:3:0
2. \-shar:::reconstruct_pattern_homo(...)
3. \-spatstat.core::runifpoint
4. \-base::getExportedValue(pkg, name)
-- Error (test-reconstruct_pattern.R:4:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::reconstruct_pattern(...) at test-reconstruct_pattern.R:4:0
2. \-shar:::reconstruct_pattern_homo(...)
3. \-spatstat.core::runifpoint
4. \-base::getExportedValue(pkg, name)
-- Error (test-reconstruct_pattern_cluster.R:4:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar:::reconstruct_pattern_cluster(...) at test-reconstruct_pattern_cluster.R:4:0
2. \-spatstat.core::runifpoint
3. \-base::getExportedValue(pkg, name)
-- Error (test-reconstruct_pattern_hetero.R:3:1): (code run outside of `test_that()`) --
Error: 'rpoispp' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-spatstat.core::rpoispp at test-reconstruct_pattern_hetero.R:3:0
2. \-base::getExportedValue(pkg, name)
-- Error (test-reconstruct_pattern_homo.R:4:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_homo.R:4:0
2. \-spatstat.core::runifpoint
3. \-base::getExportedValue(pkg, name)
-- Error (test-reconstruct_pattern_marks.R:3:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar:::reconstruct_pattern_homo(...) at test-reconstruct_pattern_marks.R:3:0
2. \-spatstat.core::runifpoint
3. \-base::getExportedValue(pkg, name)
-- Error (test-results_habitat_association.R:5:1): (code run outside of `test_that()`) --
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(...) at test-results_habitat_association.R:5:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
4. \-spatstat.core::runifpoint
5. \-base::getExportedValue(pkg, name)
-- Error (test-sample_randomized.R:3:1): (code run outside of `test_that()`) ---
Error: 'runifpoint' is not an exported object from 'namespace:spatstat.core'
Backtrace:
x
1. \-shar::fit_point_process(species_a, n_random = 9, verbose = FALSE) at test-sample_randomized.R:3:0
2. \-base::lapply(...)
3. \-shar FUN(X[[i]], ...)
4. \-spatstat.core::runifpoint
5. \-base::getExportedValue(pkg, name)
[ FAIL 13 | WARN 0 | SKIP 0 | PASS 36 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64