Last updated on 2022-03-07 06:48:39 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.09 | 40.25 | 139.91 | 180.16 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.09 | 29.21 | 105.99 | 135.20 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.09 | 213.86 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.09 | 219.50 | NOTE | |||
| r-devel-windows-x86_64-new-UL | 1.09 | 126.00 | 150.00 | 276.00 | NOTE | |
| r-devel-windows-x86_64-new-TK | 1.09 | NOTE | ||||
| r-patched-linux-x86_64 | 1.09 | 27.46 | 127.12 | 154.58 | NOTE | |
| r-release-linux-x86_64 | 1.09 | NOTE | ||||
| r-release-macos-arm64 | 1.09 | NOTE | ||||
| r-release-macos-x86_64 | 1.09 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 1.09 | 66.00 | 142.00 | 208.00 | NOTE | |
| r-oldrel-macos-x86_64 | 1.09 | NOTE | ||||
| r-oldrel-windows-ix86+x86_64 | 1.09 | 65.00 | 143.00 | 208.00 | NOTE |
Version: 1.09
Check: top-level files
Result: NOTE
Non-standard file/directory found at top level:
'copying'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.09
Check: R code for possible problems
Result: NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
File 'FunCluster/R/FunCluster.R':
.First.lib calls:
cat(paste("\nThis is FunCluster package version ", f.version, " maintained by Corneliu Henegar.\n\n", "FunCluster(wd='', org='HS', go.direct=FALSE, clusterm='cc', compare='common.correl.genes',\n", "\tcorr.met='greedy', corr.th=0.85, two.lists=TRUE, restrict=FALSE, alpha=0.05,\n", "\tlocation=FALSE, details=FALSE)\n\n", sep = ""))
Package startup functions should use 'packageStartupMessage' to
generate messages.
See section 'Good practice' in '?.onAttach'.
MiseEnFormeKegg: warning in gl(1, NbKmap, label = LL): partial argument
match of 'label' to 'labels'
MiseEnFormeKeggSC: warning in gl(1, NbKmap, label = LL): partial
argument match of 'label' to 'labels'
prop.alt: warning in matrix(seq(from = adjustment.args$edf.lower, by =
stepsize, len = adjustment.args$num.steps), nr =
adjustment.args$num.steps, nc = 1): partial argument match of 'nr' to
'nrow'
prop.alt: warning in matrix(seq(from = adjustment.args$edf.lower, by =
stepsize, len = adjustment.args$num.steps), nr =
adjustment.args$num.steps, nc = 1): partial argument match of 'nc' to
'ncol'
AnnotationIndirecte: no visible global function definition for
'write.table'
ChargerKegg: no visible global function definition for 'download.file'
ChargerKegg: no visible global function definition for 'count.fields'
ChargerKegg: no visible global function definition for 'read.table'
ChargerKegg: no visible global function definition for 'write.table'
FunCluster: no visible global function definition for 'read.table'
GeneInfo: no visible global function definition for 'download.file'
GeneInfo: no visible global function definition for 'read.table'
GeneInfoSC: no visible global function definition for 'download.file'
GeneInfoSC: no visible global function definition for 'read.table'
Kegg: no visible global function definition for 'download.file'
Kegg: no visible global function definition for 'read.table'
Kegg: no visible global function definition for 'write.table'
MakeGoHierarchy: no visible global function definition for
'download.file'
MakeGoHierarchy: no visible global function definition for 'read.table'
MakeGoHierarchy: no visible global function definition for
'write.table'
MakeGoTerms: no visible global function definition for 'write.table'
MakeLocusNames: no visible global function definition for 'write.table'
MiseEnFormeKegg: no visible global function definition for
'write.table'
MiseEnFormeKeggSC: no visible global function definition for
'write.table'
TroisiemeFiltrage: no visible global function definition for
'write.table'
gene.correl: no visible global function definition for 'as.dist'
gene.correl: no visible global function definition for 'hclust'
gene.correl: no visible global function definition for 'cutree'
goAndLL: no visible global function definition for 'download.file'
goAndLL: no visible global function definition for 'read.table'
pclust: no visible global function definition for 'p.adjust'
pterm: no visible global function definition for 'p.adjust'
pvalues: no visible global function definition for 'fisher.test'
term.compare: no visible global function definition for 'cor.test'
Undefined global functions or variables:
as.dist cor.test count.fields cutree download.file fisher.test hclust
p.adjust read.table write.table
Consider adding
importFrom("stats", "as.dist", "cor.test", "cutree", "fisher.test",
"hclust", "p.adjust")
importFrom("utils", "count.fields", "download.file", "read.table",
"write.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64