Last updated on 2022-03-18 06:48:54 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 3.18 | 33.73 | 36.91 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 2.25 | 25.62 | 27.87 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 45.82 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 29.86 | ERROR | |||
| r-devel-windows-x86_64-new-UL | 0.1.0 | 143.00 | 49.00 | 192.00 | ERROR | |
| r-devel-windows-x86_64-new-TK | 0.1.0 | ERROR | ||||
| r-patched-linux-x86_64 | 0.1.0 | 2.51 | 30.86 | 33.37 | NOTE | |
| r-release-linux-x86_64 | 0.1.0 | 2.70 | 31.11 | 33.81 | NOTE | |
| r-release-macos-arm64 | 0.1.0 | NOTE | ||||
| r-release-macos-x86_64 | 0.1.0 | NOTE | ||||
| r-release-windows-ix86+x86_64 | 0.1.0 | 5.00 | 40.00 | 45.00 | NOTE | |
| r-oldrel-macos-x86_64 | 0.1.0 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.0 | 5.00 | 35.00 | 40.00 | OK |
Version: 0.1.0
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-ix86+x86_64
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in 'RNAstructureModuleMiner-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot_bulge
> ### Title: plot_bulge
> ### Aliases: plot_bulge
>
> ### ** Examples
>
> ###
> col1 <- c(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19)
> col2 <- c("G","C","C","A","C","C","C","U","G","C","A","G","G","G","U","C","G","G","C")
> col3 <- c(0,1,2,3,4,5,6,7,8,0,10,11,12,13,14,15,16,17,18)
> col4 <- c(2,3,4,5,6,7,8,9,0,11,12,13,14,15,16,17,18,19,0)
> col5 <- c(19,18,17,15,14,13,12,11,10,9,8,7,6,5,4,0,3,2,1)
> col6 <- c(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19)
> data <- matrix(c(col1,col2,col3,col4,col5,col6),byrow=FALSE,ncol =6)
> plot_bulge(data)
pos before after seq pos2 bound
1 20 19 21 A 20 0
2 21 20 22 A 21 -1
3 1 0 2 G 1 19
4 2 1 3 C 2 18
5 3 2 4 C 3 17
6 4 3 5 A 4 15
7 5 4 6 C 5 14
8 6 5 7 C 6 13
9 7 6 8 C 7 12
10 8 7 9 U 8 11
11 9 8 10 G 9 10
12 10 9 11 C 10 9
13 11 10 12 A 11 8
14 12 11 13 G 12 7
15 13 12 14 G 13 6
16 14 13 15 G 14 5
17 15 14 16 U 15 4
18 16 15 17 C 16 0
19 17 16 18 G 17 3
20 18 17 19 G 18 2
21 19 18 20 C 19 1
22 0 -1 1 A 0 20
23 -1 -2 0 A -1 21
[1] "-1 21 0 0 0 1 -1 0"
$x
[1] -1
$y
[1] 0
[1] 1.047198
[1] "20 21 20"
[1] "19 20 19"
[1] "18 19 18"
[1] "17 18 17"
[1] "15 17 16"
[1] "New LOOPS: c(3, 17)"
[1] 3
[1] "4 15 4.95105651629515 -0.309016994374947 5.53884176858763 0.5 4 2.44929359829471e-16"
$x
[1] -0.9510565
$y
[1] 0.309017
[1] 1.075232
[1] "14 15 14"
[1] "13 14 13"
[1] "12 13 12"
[1] "11 12 11"
[1] "10 11 10"
[1] "9 10 9"
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "8 9 8"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "7 8 7"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "6 7 6"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "5 6 5"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "4 5 4"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "New LOOPS: c(15, 4)"
[1] 15
Error in if (output$x[output$pos == lps[1]] < output$x[output$pos == pp]) { :
the condition has length > 1
Calls: plot_bulge -> ct2coord
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘RNAstructureModuleMiner-Ex.R’ failed
The error most likely occurred in:
> ### Name: plot_bulge
> ### Title: plot_bulge
> ### Aliases: plot_bulge
>
> ### ** Examples
>
> ###
> col1 <- c(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19)
> col2 <- c("G","C","C","A","C","C","C","U","G","C","A","G","G","G","U","C","G","G","C")
> col3 <- c(0,1,2,3,4,5,6,7,8,0,10,11,12,13,14,15,16,17,18)
> col4 <- c(2,3,4,5,6,7,8,9,0,11,12,13,14,15,16,17,18,19,0)
> col5 <- c(19,18,17,15,14,13,12,11,10,9,8,7,6,5,4,0,3,2,1)
> col6 <- c(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19)
> data <- matrix(c(col1,col2,col3,col4,col5,col6),byrow=FALSE,ncol =6)
> plot_bulge(data)
pos before after seq pos2 bound
1 20 19 21 A 20 0
2 21 20 22 A 21 -1
3 1 0 2 G 1 19
4 2 1 3 C 2 18
5 3 2 4 C 3 17
6 4 3 5 A 4 15
7 5 4 6 C 5 14
8 6 5 7 C 6 13
9 7 6 8 C 7 12
10 8 7 9 U 8 11
11 9 8 10 G 9 10
12 10 9 11 C 10 9
13 11 10 12 A 11 8
14 12 11 13 G 12 7
15 13 12 14 G 13 6
16 14 13 15 G 14 5
17 15 14 16 U 15 4
18 16 15 17 C 16 0
19 17 16 18 G 17 3
20 18 17 19 G 18 2
21 19 18 20 C 19 1
22 0 -1 1 A 0 20
23 -1 -2 0 A -1 21
[1] "-1 21 0 0 0 1 -1 0"
$x
[1] -1
$y
[1] 0
[1] 1.047198
[1] "20 21 20"
[1] "19 20 19"
[1] "18 19 18"
[1] "17 18 17"
[1] "15 17 16"
[1] "New LOOPS: c(3, 17)"
[1] 3
[1] "4 15 4.95105651629515 -0.309016994374947 5.53884176858763 0.5 4 2.44929359829471e-16"
$x
[1] -0.9510565
$y
[1] 0.309017
[1] 1.075232
[1] "14 15 14"
[1] "13 14 13"
[1] "12 13 12"
[1] "11 12 11"
[1] "10 11 10"
[1] "9 10 9"
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "8 9 8"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "7 8 7"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "6 7 6"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "5 6 5"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "4 5 4"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "New LOOPS: c(15, 4)"
[1] 15
Error in if (output$x[output$pos == lps[1]] < output$x[output$pos == pp]) { :
the condition has length > 1
Calls: plot_bulge -> ct2coord
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in 'RNAstructureModuleMiner-Ex.R' failed
The error most likely occurred in:
> ### Name: plot_bulge
> ### Title: plot_bulge
> ### Aliases: plot_bulge
>
> ### ** Examples
>
> ###
> col1 <- c(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19)
> col2 <- c("G","C","C","A","C","C","C","U","G","C","A","G","G","G","U","C","G","G","C")
> col3 <- c(0,1,2,3,4,5,6,7,8,0,10,11,12,13,14,15,16,17,18)
> col4 <- c(2,3,4,5,6,7,8,9,0,11,12,13,14,15,16,17,18,19,0)
> col5 <- c(19,18,17,15,14,13,12,11,10,9,8,7,6,5,4,0,3,2,1)
> col6 <- c(1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19)
> data <- matrix(c(col1,col2,col3,col4,col5,col6),byrow=FALSE,ncol =6)
> plot_bulge(data)
pos before after seq pos2 bound
1 20 19 21 A 20 0
2 21 20 22 A 21 -1
3 1 0 2 G 1 19
4 2 1 3 C 2 18
5 3 2 4 C 3 17
6 4 3 5 A 4 15
7 5 4 6 C 5 14
8 6 5 7 C 6 13
9 7 6 8 C 7 12
10 8 7 9 U 8 11
11 9 8 10 G 9 10
12 10 9 11 C 10 9
13 11 10 12 A 11 8
14 12 11 13 G 12 7
15 13 12 14 G 13 6
16 14 13 15 G 14 5
17 15 14 16 U 15 4
18 16 15 17 C 16 0
19 17 16 18 G 17 3
20 18 17 19 G 18 2
21 19 18 20 C 19 1
22 0 -1 1 A 0 20
23 -1 -2 0 A -1 21
[1] "-1 21 0 0 0 1 -1 0"
$x
[1] -1
$y
[1] 0
[1] 1.047198
[1] "20 21 20"
[1] "19 20 19"
[1] "18 19 18"
[1] "17 18 17"
[1] "15 17 16"
[1] "New LOOPS: c(3, 17)"
[1] 3
[1] "4 15 4.95105651629515 -0.309016994374947 5.53884176858763 0.5 4 2.44921270764475e-16"
$x
[1] -0.9510565
$y
[1] 0.309017
[1] 1.075232
[1] "14 15 14"
[1] "13 14 13"
[1] "12 13 12"
[1] "11 12 11"
[1] "10 11 10"
[1] "9 10 9"
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "8 9 8"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "7 8 7"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "6 7 6"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "5 6 5"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "4 5 4"
Warning in output$x[j] <- output$x[output$pos == prev1] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == prev1] + vect$y[1] :
number of items to replace is not a multiple of replacement length
Warning in output$x[j] <- output$x[output$pos == pbpos] + vect$x[1] :
number of items to replace is not a multiple of replacement length
Warning in output$y[j] <- output$y[output$pos == pbpos] + vect$y[1] :
number of items to replace is not a multiple of replacement length
[1] "New LOOPS: c(15, 4)"
[1] 15
Error in if (output$x[output$pos == lps[1]] < output$x[output$pos == pp]) { :
the condition has length > 1
Calls: plot_bulge -> ct2coord
Execution halted
Flavors: r-devel-windows-x86_64-new-UL, r-devel-windows-x86_64-new-TK