Last updated on 2022-03-24 06:50:07 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.0 | 78.29 | 325.87 | 404.16 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.0 | 62.07 | 215.36 | 277.43 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.0 | 514.93 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.0 | 476.58 | OK | |||
| r-devel-windows-x86_64-new-UL | 0.1.0 | 80.00 | 389.00 | 469.00 | OK | |
| r-devel-windows-x86_64-new-TK | 0.1.0 | OK | ||||
| r-patched-linux-x86_64 | 0.1.0 | 64.89 | 296.09 | 360.98 | OK | |
| r-release-linux-x86_64 | 0.1.0 | 69.99 | 298.78 | 368.77 | OK | |
| r-release-macos-arm64 | 0.1.0 | ERROR | ||||
| r-release-macos-x86_64 | 0.1.0 | WARN | ||||
| r-release-windows-ix86+x86_64 | 0.1.0 | 189.00 | 391.00 | 580.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.0 | OK | ||||
| r-oldrel-windows-ix86+x86_64 | 0.1.0 | 187.00 | 383.00 | 570.00 | OK |
clang-ASAN clang-UBSAN gcc-ASAN M1mac valgrind
Version: 0.1.0
Check: examples
Result: ERROR
Running examples in ‘FlywayNet-Ex.R’ failed
The error most likely occurred in:
> ### Name: estimate_migration_ABC
> ### Title: Estimates migration parameters using an ABC method.
> ### Aliases: estimate_migration_ABC
>
> ### ** Examples
>
> migr <- generate_toy_migration()
> # Argument nb_simul just provide to reduce running time
> estimated_migr <- estimate_migration_ABC( migr, nb_simul = 30 )
[1] " ------ Lenormand et al. (2012)'s algorithm ------"
Error in array(x, c(length(x), 1L), if (!is.null(names(x))) list(names(x), :
'data' must be of a vector type, was 'NULL'
Calls: estimate_migration_ABC ... as.matrix -> as.matrix -> as.matrix.default -> array
Execution halted
Flavor: r-release-macos-arm64
Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
...
--- re-building ‘introduction.Rmd’ using rmarkdown
Quitting from lines 69-75 (introduction.Rmd)
Error: processing vignette 'introduction.Rmd' failed with diagnostics:
'data' must be of a vector type, was 'NULL'
--- failed re-building ‘introduction.Rmd’
SUMMARY: processing the following file failed:
‘introduction.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64
Version: 0.1.0
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘introduction.Rmd’ using rmarkdown
Pandoc is required to build R Markdown vignettes but not available. Please make sure it is installed.
*** caught segfault ***
address 0x7f8ac2bfffe8, cause 'memory not mapped'
Traceback:
1: estimate_migration_MCEM_C(migr, estimate_transitions = estimate_transitions, estimate_sojourns = estimate_sojourns, sojourn_domain = sojourn_domain, start_transitions = start_transitions, start_sojourns = start_sojourns, nb_particles = nb_particles, itermax = itermax, MC_algo = MC_algo, MH_neighborhood = MH_neighborhood, MH_transition_length = MH_transition_length, log_transitions = log_transitions, log_sojourns = log_sojourns, log_loglikelihood = log_loglikelihood, log_sel_particles = log_sel_particles, log_acceptance_rate = log_acceptance_rate, verbose = verbose)
2: estimate_migration_MCEM(migr2, MC_algo = "MH", log_transitions = TRUE, log_sojourns = TRUE, log_loglikelihood = TRUE)
3: eval(expr, envir, enclos)
4: eval(expr, envir, enclos)
5: eval_with_user_handlers(expr, envir, enclos, user_handlers)
6: withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers))
7: withCallingHandlers(withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers)), warning = wHandler, error = eHandler, message = mHandler)
8: handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers)), warning = wHandler, error = eHandler, message = mHandler))
9: timing_fn(handle(ev <- withCallingHandlers(withVisible(eval_with_user_handlers(expr, envir, enclos, user_handlers)), warning = wHandler, error = eHandler, message = mHandler)))
10: evaluate_call(expr, parsed$src[[i]], envir = envir, enclos = enclos, debug = debug, last = i == length(out), use_try = stop_on_error != 2L, keep_warning = keep_warning, keep_message = keep_message, output_handler = output_handler, include_timing = include_timing)
11: evaluate::evaluate(...)
12: evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options))
13: in_dir(input_dir(), evaluate(code, envir = env, new_device = FALSE, keep_warning = !isFALSE(options$warning), keep_message = !isFALSE(options$message), stop_on_error = if (is.numeric(options$error)) options$error else { if (options$error && options$include) 0L else 2L }, output_handler = knit_handlers(options$render, options)))
14: eng_r(options)
15: block_exec(params)
16: call_block(x)
17: process_group.block(group)
18: process_group(group)
19: withCallingHandlers(if (tangle) process_tangle(group) else process_group(group), error = function(e) { setwd(wd) cat(res, sep = "\n", file = output %n% "") message("Quitting from lines ", paste(current_lines(i), collapse = "-"), " (", knit_concord$get("infile"), ") ") })
20: process_file(text, output)
21: knit(input, text = text, envir = envir, quiet = quiet)
22: (if (grepl("\\.[Rr]md$", file)) knit2html else if (grepl("\\.[Rr]rst$", file)) knit2pandoc else knit)(file, encoding = encoding, quiet = quiet, envir = globalenv(), ...)
23: vweave(...)
24: engine$weave(file, quiet = quiet, encoding = enc)
25: doTryCatch(return(expr), name, parentenv, handler)
26: tryCatchOne(expr, names, parentenv, handlers[[1L]])
27: tryCatchList(expr, classes, parentenv, handlers)
28: tryCatch({ engine$weave(file, quiet = quiet, encoding = enc) setwd(startdir) output <- find_vignette_product(name, by = "weave", engine = engine) if (!have.makefile && vignette_is_tex(output)) { texi2pdf(file = output, clean = FALSE, quiet = quiet) output <- find_vignette_product(name, by = "texi2pdf", engine = engine) } outputs <- c(outputs, output)}, error = function(e) { thisOK <<- FALSE fails <<- c(fails, file) message(gettextf("Error: processing vignette '%s' failed with diagnostics:\n%s", file, conditionMessage(e)))})
29: tools:::buildVignettes(dir = "/Volumes/Builds/packages/high-sierra-x86_64/results/4.1/FlywayNet.Rcheck/vign_test/FlywayNet", ser_elibs = "/Volumes/Temp/tmp/Rtmp6q13k9/filef030ceb67ba.rds")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-release-macos-x86_64