Last updated on 2022-04-27 11:53:50 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0 | 2.47 | 53.01 | 55.48 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.0 | 2.69 | 39.76 | 42.45 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.0 | 52.60 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0 | 50.44 | ERROR | |||
| r-devel-windows-x86_64 | 2.0 | 18.00 | 68.00 | 86.00 | NOTE | |
| r-patched-linux-x86_64 | 2.0 | 3.48 | 51.64 | 55.12 | NOTE | |
| r-release-linux-x86_64 | 2.0 | 2.94 | 51.64 | 54.58 | NOTE | |
| r-release-macos-arm64 | 2.0 | 22.00 | NOTE | |||
| r-release-macos-x86_64 | 2.0 | 38.00 | NOTE | |||
| r-release-windows-x86_64 | 2.0 | 15.00 | 73.00 | 88.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.0 | 27.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.0 | 38.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 2.0 | 6.00 | 59.00 | 65.00 | NOTE |
Version: 2.0
Check: R code for possible problems
Result: NOTE
BOGest: no visible global function definition for 'read.table'
BOGstat: no visible global function definition for 'phyper'
BOGstat: no visible global function definition for 'wilcox.test'
BOGstat: no visible global function definition for 'p.adjust'
gseaplot: no visible global function definition for 'par'
gseaplot: no visible global function definition for 'points'
gseaplot: no visible global function definition for 'axis'
gseaplot: no visible global function definition for 'segments'
hgplot: no visible global function definition for 'par'
hgplot: no visible global function definition for 'barplot'
Undefined global functions or variables:
axis barplot p.adjust par phyper points read.table segments
wilcox.test
Consider adding
importFrom("graphics", "axis", "barplot", "par", "points", "segments")
importFrom("stats", "p.adjust", "phyper", "wilcox.test")
importFrom("utils", "read.table")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.0
Check: examples
Result: ERROR
Running examples in ‘BOG-Ex.R’ failed
The error most likely occurred in:
> ### Name: BOG
> ### Title: BOG
> ### Aliases: BOG
>
> ### ** Examples
>
> bog=BOG(data="anthracis_iron",data.type="pval",cog.file="anthracis",gsea=FALSE)
Error in length(k) != 0 && has.key(k, h_ref) :
'length = 2' in coercion to 'logical(1)'
Calls: BOG -> BOGest -> BOGstat
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc