Last updated on 2022-04-27 11:54:07 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0-8 | 8.90 | 45.00 | 53.90 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0-8 | 6.08 | 34.46 | 40.54 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0-8 | 68.30 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0-8 | 60.85 | ERROR | |||
| r-devel-windows-x86_64 | 1.0-8 | 27.00 | 75.00 | 102.00 | OK | |
| r-patched-linux-x86_64 | 1.0-8 | 7.18 | 43.76 | 50.94 | OK | |
| r-release-linux-x86_64 | 1.0-8 | 7.57 | 42.88 | 50.45 | OK | |
| r-release-macos-arm64 | 1.0-8 | 24.00 | OK | |||
| r-release-macos-x86_64 | 1.0-8 | 48.00 | OK | |||
| r-release-windows-x86_64 | 1.0-8 | 34.00 | 78.00 | 112.00 | OK | |
| r-oldrel-macos-arm64 | 1.0-8 | 28.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0-8 | 41.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.0-8 | 22.00 | 82.00 | 104.00 | OK |
Version: 1.0-8
Check: examples
Result: ERROR
Running examples in ‘RGBM-Ex.R’ failed
The error most likely occurred in:
> ### Name: RGBM
> ### Title: Regularized Gradient Boosting Machine for inferring GRN
> ### Aliases: RGBM
>
> ### ** Examples
>
> # load RGBM library
> library("RGBM")
> # this step is optional, it helps speed up calculations, run in parallel on 2 processors
> library(doParallel)
> cl <- makeCluster(2)
> # run network inference on a 100-by-100 dummy expression data.
> A = RGBM()
[1] "Identified colids for active tfs"
[1] "Identified list of active tfs for each gene"
[1] "Performed first step of model building"
[1] "Intermediate GRN and Variable Importance Curve in: /tmp/RtmpKadwE6/working_dir/RtmpS40GNt"
Error in { : task 1 failed - "'length = 5' in coercion to 'logical(1)'"
Calls: RGBM ... regularized_GBM_step -> select_ideal_k -> %dopar% -> <Anonymous>
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0-8
Check: examples
Result: ERROR
Running examples in ‘RGBM-Ex.R’ failed
The error most likely occurred in:
> ### Name: RGBM
> ### Title: Regularized Gradient Boosting Machine for inferring GRN
> ### Aliases: RGBM
>
> ### ** Examples
>
> # load RGBM library
> library("RGBM")
> # this step is optional, it helps speed up calculations, run in parallel on 2 processors
> library(doParallel)
> cl <- makeCluster(2)
> # run network inference on a 100-by-100 dummy expression data.
> A = RGBM()
[1] "Identified colids for active tfs"
[1] "Identified list of active tfs for each gene"
[1] "Performed first step of model building"
[1] "Intermediate GRN and Variable Importance Curve in: /tmp/RtmpgTkViN/working_dir/RtmpG4ov0Z"
Error in { : task 1 failed - "'length = 5' in coercion to 'logical(1)'"
Calls: RGBM ... regularized_GBM_step -> select_ideal_k -> %dopar% -> <Anonymous>
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc