Last updated on 2022-04-27 11:53:49 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1 | 3.20 | 50.86 | 54.06 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1 | 3.09 | 39.06 | 42.15 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1 | 61.39 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1 | 57.04 | ERROR | |||
| r-devel-windows-x86_64 | 1.1 | 10.00 | 70.00 | 80.00 | OK | |
| r-patched-linux-x86_64 | 1.1 | 2.48 | 48.22 | 50.70 | NOTE | |
| r-release-linux-x86_64 | 1.1 | 3.51 | 48.99 | 52.50 | NOTE | |
| r-release-macos-arm64 | 1.1 | 49.00 | OK | |||
| r-release-macos-x86_64 | 1.1 | 38.00 | OK | |||
| r-release-windows-x86_64 | 1.1 | 16.00 | 77.00 | 93.00 | OK | |
| r-oldrel-macos-arm64 | 1.1 | 78.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1 | 137.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.1 | 8.00 | 61.00 | 69.00 | OK |
Version: 1.1
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
'Bestmatches.csv' 'ID.csv' 'listsp.csv' 'mylabels.csv'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1
Check: examples
Result: ERROR
Running examples in ‘adhoc-Ex.R’ failed
The error most likely occurred in:
> ### Name: adhoc-package
> ### Title: Calculation of ad hoc distance thresholds for DNA barcoding
> ### identification.
> ### Aliases: adhoc-package adhoc
>
> ### ** Examples
>
> data(tephdata);
> out1<-checkDNAbcd(tephdata);
Warning in haplotype.DNAbin(seq[grep(listsp$species[[i]], labels(seq)), :
some sequences were not assigned to the same haplotype because of ambiguities
Warning in haplotype.DNAbin(seq[grep(listsp$species[[i]], labels(seq)), :
some sequences of different lengths were assigned to the same haplotype
Warning in haplotype.DNAbin(seq[grep(listsp$species[[i]], labels(seq)), :
some sequences of different lengths were assigned to the same haplotype
Warning in haplotype.DNAbin(seq[grep(listsp$species[[i]], labels(seq)), :
some sequences of different lengths were assigned to the same haplotype
Warning in haplotype.DNAbin(seq[grep(listsp$species[[i]], labels(seq)), :
some sequences were not assigned to the same haplotype because of ambiguities
Warning in haplotype.DNAbin(seq[grep(listsp$species[[i]], labels(seq)), :
some sequences of different lengths were assigned to the same haplotype
Warning in haplotype.DNAbin(seq[grep(listsp$species[[i]], labels(seq)), :
no segregating site detected with these options
Warning in haplotype.DNAbin(seq[grep(listsp$species[[i]], labels(seq)), :
some sequences were not assigned to the same haplotype because of ambiguities
Warning in haplotype.DNAbin(seq[grep(listsp$species[[i]], labels(seq)), :
no segregating site detected with these options
Warning in haplotype.DNAbin(seq[grep(listsp$species[[i]], labels(seq)), :
some sequences of different lengths were assigned to the same haplotype
> out2<-adhocTHR(out1);
Error in Reg == "linear" && myreg$coefficients < 0 :
'length = 4' in coercion to 'logical(1)'
Calls: adhocTHR
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc