Last updated on 2022-04-27 11:53:50 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.3 | 2.86 | 52.68 | 55.54 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.2.3 | 2.26 | 40.06 | 42.32 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.2.3 | 60.13 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.3 | 56.08 | ERROR | |||
| r-devel-windows-x86_64 | 0.2.3 | 21.00 | 76.00 | 97.00 | NOTE | |
| r-patched-linux-x86_64 | 0.2.3 | 2.31 | 49.74 | 52.05 | NOTE | |
| r-release-linux-x86_64 | 0.2.3 | 2.41 | 51.00 | 53.41 | NOTE | |
| r-release-macos-arm64 | 0.2.3 | 24.00 | NOTE | |||
| r-release-macos-x86_64 | 0.2.3 | 45.00 | NOTE | |||
| r-release-windows-x86_64 | 0.2.3 | 18.00 | 81.00 | 99.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.2.3 | 27.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.2.3 | 36.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 0.2.3 | 6.00 | 60.00 | 66.00 | NOTE |
Version: 0.2.3
Check: LazyData
Result: NOTE
'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.2.3
Check: examples
Result: ERROR
Running examples in ‘bioset-Ex.R’ failed
The error most likely occurred in:
> ### Name: calc_factor_conc
> ### Title: Get a factor to convert concentrations.
> ### Aliases: calc_factor_conc
>
> ### ** Examples
>
> library("dplyr")
Attaching package: ‘dplyr’
The following objects are masked from ‘package:stats’:
filter, lag
The following objects are masked from ‘package:base’:
intersect, setdiff, setequal, union
>
> # generate test data
> data <- tibble(
+ sample = c("A", "B", "C"),
+ conc = c(4.5, 2.3, 5.1), # concentration in g / l
+ )
>
> fctr_ng_ml <- calc_factor_conc(from = "g/l", to = "ng/ml")
Error in is.character(x) && nchar(x) > 0 :
'length = 2' in coercion to 'logical(1)'
Calls: calc_factor_conc -> canonicalise_units -> %in% -> is_recognised_unit
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.3
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(bioset)
>
> test_check("bioset")
[ FAIL 2 | WARN 3 | SKIP 0 | PASS 61 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test_calc.R:6:3): canonicalise_units works as expected ───────────────
Error in `is.character(x) && nchar(x) > 0`: 'length = 2' in coercion to 'logical(1)'
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test_calc.R:6:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─bioset:::canonicalise_units(" µ l / \tf g\t")
5. ├─FALSE %in% is_recognised_unit(parts)
6. └─bioset:::is_recognised_unit(parts)
── Error (test_calc.R:65:3): concentration are converted correctly ─────────────
Error in `is.character(x) && nchar(x) > 0`: 'length = 2' in coercion to 'logical(1)'
Backtrace:
▆
1. ├─testthat::expect_equal(calc_factor_conc("M", "mM"), 1000) at test_calc.R:65:2
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─bioset::calc_factor_conc("M", "mM")
5. └─bioset:::canonicalise_units(from)
6. ├─FALSE %in% is_recognised_unit(parts)
7. └─bioset:::is_recognised_unit(parts)
[ FAIL 2 | WARN 3 | SKIP 0 | PASS 61 ]
Error: Test failures
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc