Last updated on 2022-04-27 06:53:39 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.6.11 | 38.71 | 180.89 | 219.60 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.6.11 | 27.81 | 130.40 | 158.21 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.6.11 | 263.91 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.6.11 | 271.20 | ERROR | |||
| r-devel-windows-x86_64 | 0.6.11 | 62.00 | 335.00 | 397.00 | OK | |
| r-patched-linux-x86_64 | 0.6.11 | 33.30 | 164.80 | 198.10 | ERROR | |
| r-release-linux-x86_64 | 0.6.11 | 30.52 | 167.15 | 197.67 | ERROR | |
| r-release-macos-arm64 | 0.6.11 | 85.00 | NOTE | |||
| r-release-macos-x86_64 | 0.6.11 | 229.00 | OK | |||
| r-release-windows-x86_64 | 0.6.11 | 63.00 | 350.00 | 413.00 | OK | |
| r-oldrel-macos-arm64 | 0.6.11 | 145.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.6.11 | 185.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 0.6.11 | 86.00 | 474.00 | 560.00 | OK |
Version: 0.6.11
Check: examples
Result: ERROR
Running examples in 'dnapath-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_reactome_pathways
> ### Title: Obtain Reactome pathways
> ### Aliases: get_reactome_pathways
>
> ### ** Examples
>
> # Obtaining a pathway list for human (Homo sapiens).
> # In this example, overlapping pathways are not combined (this is
> # specified by setting overlap_limit to NULL).
> pathway_list <- get_reactome_pathways("Homo sapiens", overlap_limit = NULL,
+ min_size = 10, max_size = 20)
Obtaining reactome pathway information for species: Homo sapiens
Error in get_reactome_pathways("Homo sapiens", overlap_limit = NULL, min_size = 10, :
Homo sapiens is not an available species. Use one of the following:
1-diphosphate,
Bos taurus
,
Caenorhabditis elegans
,
Canis familiaris
,
Danio rerio
,
Dictyostelium discoideum
,
Drosophila melanogaster
,
Gallus gallus
,
Homo sapiens
,
Mus musculus
,
Mycobacterium tuberculosis
,
Plasmodium falciparum
,
Rattus norvegicus
,
Saccharomyces cerevisiae
,
Schizosaccharomyces pombe
,
Sus scrofa
Xenopus tropicalis
.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.6.11
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building 'introduction_to_dnapath.Rmd' using rmarkdown
--- finished re-building 'introduction_to_dnapath.Rmd'
--- re-building 'package_data.Rmd' using rmarkdown
Quitting from lines 30-31 (package_data.Rmd)
Error: processing vignette 'package_data.Rmd' failed with diagnostics:
Homo sapiens is not an available species. Use one of the following:
1-diphosphate,
Bos taurus
,
Caenorhabditis elegans
,
Canis familiaris
,
Danio rerio
,
Dictyostelium discoideum
,
Drosophila melanogaster
,
Gallus gallus
,
Homo sapiens
,
Mus musculus
,
Mycobacterium tuberculosis
,
Plasmodium falciparum
,
Rattus norvegicus
,
Saccharomyces cerevisiae
,
Schizosaccharomyces pombe
,
Sus scrofa
Xenopus tropicalis
.
--- failed re-building 'package_data.Rmd'
SUMMARY: processing the following file failed:
'package_data.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.6.11
Check: examples
Result: ERROR
Running examples in ‘dnapath-Ex.R’ failed
The error most likely occurred in:
> ### Name: get_reactome_pathways
> ### Title: Obtain Reactome pathways
> ### Aliases: get_reactome_pathways
>
> ### ** Examples
>
> # Obtaining a pathway list for human (Homo sapiens).
> # In this example, overlapping pathways are not combined (this is
> # specified by setting overlap_limit to NULL).
> pathway_list <- get_reactome_pathways("Homo sapiens", overlap_limit = NULL,
+ min_size = 10, max_size = 20)
Obtaining reactome pathway information for species: Homo sapiens
Error in get_reactome_pathways("Homo sapiens", overlap_limit = NULL, min_size = 10, :
Homo sapiens is not an available species. Use one of the following:
1-diphosphate,
Bos taurus
,
Caenorhabditis elegans
,
Canis familiaris
,
Danio rerio
,
Dictyostelium discoideum
,
Drosophila melanogaster
,
Gallus gallus
,
Homo sapiens
,
Mus musculus
,
Mycobacterium tuberculosis
,
Plasmodium falciparum
,
Rattus norvegicus
,
Saccharomyces cerevisiae
,
Schizosaccharomyces pombe
,
Sus scrofa
Xenopus tropicalis
.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.6.11
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘introduction_to_dnapath.Rmd’ using rmarkdown
--- finished re-building ‘introduction_to_dnapath.Rmd’
--- re-building ‘package_data.Rmd’ using rmarkdown
Quitting from lines 30-31 (package_data.Rmd)
Error: processing vignette 'package_data.Rmd' failed with diagnostics:
Homo sapiens is not an available species. Use one of the following:
1-diphosphate,
Bos taurus
,
Caenorhabditis elegans
,
Canis familiaris
,
Danio rerio
,
Dictyostelium discoideum
,
Drosophila melanogaster
,
Gallus gallus
,
Homo sapiens
,
Mus musculus
,
Mycobacterium tuberculosis
,
Plasmodium falciparum
,
Rattus norvegicus
,
Saccharomyces cerevisiae
,
Schizosaccharomyces pombe
,
Sus scrofa
Xenopus tropicalis
.
--- failed re-building ‘package_data.Rmd’
SUMMARY: processing the following file failed:
‘package_data.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.6.11
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'GENIE3', 'minet', 'AnnotationDbi', 'reactome.db', 'biomaRt'
Flavor: r-release-macos-arm64
Version: 0.6.11
Check: Rd cross-references
Result: NOTE
Packages unavailable to check Rd xrefs: ‘minet’, ‘GENIE3’
Flavor: r-release-macos-arm64