Last updated on 2022-05-01 16:51:53 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.0 | 3.23 | 97.70 | 100.93 | WARN | |
| r-devel-linux-x86_64-debian-gcc | 2.0.0 | 2.88 | 49.52 | 52.40 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.0.0 | 117.53 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.0 | 113.23 | WARN | |||
| r-devel-windows-x86_64 | 2.0.0 | 151.00 | 124.00 | 275.00 | WARN | |
| r-patched-linux-x86_64 | 2.0.0 | 4.86 | 91.86 | 96.72 | OK | |
| r-release-linux-x86_64 | 2.0.0 | 2.79 | 91.67 | 94.46 | OK | |
| r-release-macos-arm64 | 2.0.0 | 35.00 | OK | |||
| r-release-macos-x86_64 | 2.0.0 | 59.00 | OK | |||
| r-release-windows-x86_64 | 2.0.0 | 103.00 | 124.00 | 227.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.0 | 40.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.0.0 | 75.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 2.0.0 | 6.00 | 82.00 | 88.00 | OK |
Version: 2.0.0
Check: Rd files
Result: WARN
checkRd: (7) dominanceanalysis-package.Rd:98: invalid email address: clbustos_at_gmail_com
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 2.0.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'lme4', 'car', 'dynlm', 'betareg'
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.0
Check: examples
Result: ERROR
Running examples in ‘dominanceanalysis-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: dominanceanalysis-package
> ### Title: Dominance analysis for general, generalized and mixed linear
> ### models
> ### Aliases: dominanceanalysis-package dominanceanalysis
>
> ### ** Examples
>
> # Basic dominance analysis
>
> data(longley)
> lm.1<-lm(Employed~.,longley)
> da<-dominanceAnalysis(lm.1)
> print(da)
Dominance analysis
Predictors: GNP.deflator, GNP, Unemployed, Armed.Forces, Population, Year
Fit-indices: r2
* Fit index: r2
complete conditional general
GNP.deflator Unmp,Ar.F,Pplt
GNP Pplt GNP.,Pplt GNP.,Unmp,Ar.F,Pplt,Year
Unemployed Ar.F
Armed.Forces
Population Unmp,Ar.F
Year GNP.,Pplt GNP.,Unmp,Ar.F,Pplt
Average contribution:
GNP Year GNP.deflator Population Unemployed Armed.Forces
0.230 0.219 0.214 0.212 0.070 0.051
> summary(da)
* Fit index: r2
Average contribution of each variable:
GNP Year GNP.deflator Population Unemployed Armed.Forces
0.230 0.219 0.214 0.212 0.070 0.051
Dominance Analysis matrix:
model level fit
1 0 0
GNP.deflator 1 0.943
GNP 1 0.967
Unemployed 1 0.253
Armed.Forces 1 0.209
Population 1 0.922
Year 1 0.943
Average level 1 1
GNP.deflator+GNP 2 0.969
GNP.deflator+Unemployed 2 0.959
GNP.deflator+Armed.Forces 2 0.943
GNP.deflator+Population 2 0.945
GNP.deflator+Year 2 0.947
GNP+Unemployed 2 0.981
GNP+Armed.Forces 2 0.968
GNP+Population 2 0.979
GNP+Year 2 0.973
Unemployed+Armed.Forces 2 0.561
Unemployed+Population 2 0.969
Unemployed+Year 2 0.982
Armed.Forces+Population 2 0.936
Armed.Forces+Year 2 0.947
Population+Year 2 0.946
Average level 2 2
GNP.deflator+GNP+Unemployed 3 0.981
GNP.deflator+GNP+Armed.Forces 3 0.969
GNP.deflator+GNP+Population 3 0.982
GNP.deflator+GNP+Year 3 0.974
GNP.deflator+Unemployed+Armed.Forces 3 0.97
GNP.deflator+Unemployed+Population 3 0.975
GNP.deflator+Unemployed+Year 3 0.983
GNP.deflator+Armed.Forces+Population 3 0.946
GNP.deflator+Armed.Forces+Year 3 0.948
GNP.deflator+Population+Year 3 0.948
GNP+Unemployed+Armed.Forces 3 0.985
GNP+Unemployed+Population 3 0.981
GNP+Unemployed+Year 3 0.982
GNP+Armed.Forces+Population 3 0.984
GNP+Armed.Forces+Year 3 0.973
GNP+Population+Year 3 0.979
Unemployed+Armed.Forces+Population 3 0.97
Unemployed+Armed.Forces+Year 3 0.993
Unemployed+Population+Year 3 0.982
Armed.Forces+Population+Year 3 0.947
Average level 3 3
GNP.deflator+GNP+Unemployed+Armed.Forces 4 0.985
GNP.deflator+GNP+Unemployed+Population 4 0.982
GNP.deflator+GNP+Unemployed+Year 4 0.983
GNP.deflator+GNP+Armed.Forces+Population 4 0.986
GNP.deflator+GNP+Armed.Forces+Year 4 0.974
GNP.deflator+GNP+Population+Year 4 0.983
GNP.deflator+Unemployed+Armed.Forces+Population 4 0.981
GNP.deflator+Unemployed+Armed.Forces+Year 4 0.993
GNP.deflator+Unemployed+Population+Year 4 0.983
GNP.deflator+Armed.Forces+Population+Year 4 0.949
GNP+Unemployed+Armed.Forces+Population 4 0.987
GNP+Unemployed+Armed.Forces+Year 4 0.995
GNP+Unemployed+Population+Year 4 0.983
GNP+Armed.Forces+Population+Year 4 0.984
Unemployed+Armed.Forces+Population+Year 4 0.995
Average level 4 4
GNP.deflator+GNP+Unemployed+Armed.Forces+Population 5 0.987
GNP.deflator+GNP+Unemployed+Armed.Forces+Year 5 0.995
GNP.deflator+GNP+Unemployed+Population+Year 5 0.984
GNP.deflator+GNP+Armed.Forces+Population+Year 5 0.987
GNP.deflator+Unemployed+Armed.Forces+Population+Year 5 0.995
GNP+Unemployed+Armed.Forces+Population+Year 5 0.995
Average level 5 5
GNP.deflator+GNP+Unemployed+Armed.Forces+Population+Year 6 0.995
GNP.deflator GNP Unemployed Armed.Forces Population Year
0.943 0.967 0.253 0.209 0.922 0.943
0.026 0.016 0 0.002 0.005
0.001 0.013 0 0.012 0.006
0.706 0.728 0.308 0.716 0.73
0.734 0.759 0.352 0.727 0.738
0.023 0.057 0.047 0.013 0.023
0.004 0.03 0.039 0.003 0.002
0.294 0.32 0.093 0.065 0.292 0.3
0.012 0.001 0.014 0.005
0.022 0.011 0.016 0.024
0.027 0.028 0.004 0.006
0.037 0.03 0.001 0.003
0.026 0.036 0.001 0.001
0 0.004 0.001 0.002
0.001 0.017 0.016 0.006
0.003 0.002 0.004 0
0 0.009 0 0.006
0.409 0.424 0.409 0.432
0.006 0.012 0.001 0.013
0.001 0 0.011 0
0.011 0.048 0.034 0.012
0.002 0.027 0.046 0
0.002 0.034 0.037 0.002
0.044 0.066 0.025 0.004 0.047 0.05
0.005 0.002 0.002
0.016 0.017 0.004
0 0.004 0
0.01 0 0.009
0.015 0.011 0.023
0.007 0.006 0.008
0 0.01 0
0.04 0.035 0.002
0.025 0.044 0
0.035 0.035 0.001
0 0.002 0.01
0.001 0.006 0.001
0.001 0.013 0
0.003 0.004 0
0 0.022 0.01
0.003 0.003 0.004
0.011 0.018 0.025
0 0.003 0.002
0.001 0 0.012
0.001 0.036 0.048
0.002 0.018 0.022 0.006 0.005 0.008
0.002 0.01
0.005 0.001
0.012 0.001
0.001 0.001
0.022 0.013
0.001 0.004
0.006 0.014
0.003 0.002
0.001 0.012
0.038 0.046
0 0.008
0 0
0.001 0.013
0.003 0.012
0 0.001
0.001 0.01 0.016 0.009 0.004 0.007
0.008
0
0.012
0.009
0.001
0
0 0.001 0.009 0.012 0 0.008
> plot(da,which.graph='complete')
Warning: `guides(<scale> = FALSE)` is deprecated. Please use `guides(<scale> = "none")` instead.
> plot(da,which.graph='conditional')
Warning: `guides(<scale> = FALSE)` is deprecated. Please use `guides(<scale> = "none")` instead.
> plot(da,which.graph='general')
>
> # Dominance analysis for HLM
>
> library(lme4)
Error in library(lme4) : there is no package called ‘lme4’
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/8s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dominanceanalysis)
>
> test_check("dominanceanalysis")
[ FAIL 9 | WARN 3 | SKIP 0 | PASS 151 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-beta-with-gasolineyield-example.R:2:1): (code run outside of `test_that()`) ──
<packageNotFoundError/error/condition>
Error in `library(betareg)`: there is no package called 'betareg'
Backtrace:
▆
1. └─base::library(betareg) at test-beta-with-gasolineyield-example.R:2:0
── Error (test-da-with-lmm.R:3:1): (code run outside of `test_that()`) ─────────
<packageNotFoundError/error/condition>
Error in `library(lme4)`: there is no package called 'lme4'
Backtrace:
▆
1. └─base::library(lme4) at test-da-with-lmm.R:3:0
── Error (test-daAverageBootstrap.R:47:3): should work for betareg ─────────────
<packageNotFoundError/error/condition>
Error in `loadNamespace(x)`: there is no package called 'betareg'
Backtrace:
▆
1. └─base::loadNamespace(x) at test-daAverageBootstrap.R:47:2
2. └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
3. └─base withOneRestart(expr, restarts[[1L]])
4. └─base doWithOneRestart(return(expr), restart)
── Error (test-daAverageBootstrap.R:55:3): should work for lme4 ────────────────
<packageNotFoundError/error/condition>
Error in `library(lme4)`: there is no package called 'lme4'
Backtrace:
▆
1. └─base::library(lme4) at test-daAverageBootstrap.R:55:2
── Error (test-daSubModels.R:74:2): Correct submodels for standard data.frame and lmer ──
Error in `lmer(y ~ xa + xb + xc + (1 | g), d.f)`: could not find function "lmer"
── Error (test-dominanceanalysis-with-dynlm.R:3:1): (code run outside of `test_that()`) ──
<packageNotFoundError/error/condition>
Error in `library(dynlm)`: there is no package called 'dynlm'
Backtrace:
▆
1. └─base::library(dynlm) at test-dominanceanalysis-with-dynlm.R:3:0
── Error (test-getdata-method.R:2:1): (code run outside of `test_that()`) ──────
<packageNotFoundError/error/condition>
Error in `library(lme4)`: there is no package called 'lme4'
Backtrace:
▆
1. └─base::library(lme4) at test-getdata-method.R:2:0
── Error (test-lmWithCovsMlm.R:3:1): (code run outside of `test_that()`) ───────
<packageNotFoundError/error/condition>
Error in `library(car)`: there is no package called 'car'
Backtrace:
▆
1. └─base::library(car) at test-lmWithCovsMlm.R:3:0
── Error (test-lmmR2-lme4.R:2:1): (code run outside of `test_that()`) ──────────
<packageNotFoundError/error/condition>
Error in `library(lme4)`: there is no package called 'lme4'
Backtrace:
▆
1. └─base::library(lme4) at test-lmmR2-lme4.R:2:0
[ FAIL 9 | WARN 3 | SKIP 0 | PASS 151 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc