Last updated on 2022-05-09 09:50:41 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0 | 3.69 | 40.73 | 44.42 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0 | 2.66 | 30.43 | 33.09 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.0 | 52.96 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0 | 51.57 | NOTE | |||
| r-devel-windows-x86_64 | 1.0 | 18.00 | 61.00 | 79.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0 | 3.40 | 39.42 | 42.82 | NOTE | |
| r-release-linux-x86_64 | 1.0 | 3.02 | 39.08 | 42.10 | NOTE | |
| r-release-macos-arm64 | 1.0 | 17.00 | NOTE | |||
| r-release-macos-x86_64 | 1.0 | 40.00 | NOTE | |||
| r-release-windows-x86_64 | 1.0 | 6.00 | 51.00 | 57.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.0 | 27.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.0 | 32.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 1.0 | 6.00 | 45.00 | 51.00 | NOTE |
Version: 1.0
Check: DESCRIPTION meta-information
Result: NOTE
Malformed Description field: should contain one or more complete sentences.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0
Check: R code for possible problems
Result: NOTE
EXP.step: no visible global function definition for 'rgamma'
EXP.step: no visible global function definition for 'rnorm'
MAX.step: no visible global function definition for 'uniroot'
Norm.GMedian: no visible binding for global variable 'median'
RNASeq.Data.Gene: no visible binding for global variable 'quantile'
decom.initial: no visible global function definition for 'kmeans'
decom.initial: no visible global function definition for 'quantile'
decom.initial: no visible global function definition for 'var'
dispersion.nb.QL: no visible binding for global variable 'quantile'
est.mu.nb.mle: no visible global function definition for 'runif'
est.v.nb.QL: no visible global function definition for 'runif'
pdf2grid: no visible global function definition for 'dnorm'
pdf2grid: no visible global function definition for 'dgamma'
prior.grid: no visible global function definition for 'sd'
prior.grid: no visible global function definition for 'dnorm'
test.AMAP: no visible global function definition for 'rgamma'
test.AMAP: no visible global function definition for 'rnorm'
test.AMAP: no visible global function definition for 'quantile'
Undefined global functions or variables:
dgamma dnorm kmeans median quantile rgamma rnorm runif sd uniroot var
Consider adding
importFrom("stats", "dgamma", "dnorm", "kmeans", "median", "quantile",
"rgamma", "rnorm", "runif", "sd", "uniroot", "var")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.0
Check: Rd line widths
Result: NOTE
Rd file 'MGN.EM.Rd':
\usage lines wider than 90 characters:
MGN.EM(data, nK, p0 = NULL, d0 = 0, nK0 = 0, iter.max = 10, print.steps = FALSE, MGN0 = NULL, model = NULL, nMC = 10000)
Rd file 'test.AMAP.Rd':
\usage lines wider than 90 characters:
test.AMAP(data, MGN, del.lim = NULL, FC = NULL, print.steps = FALSE, Integration = "MC",nMC=NULL)
\examples lines wider than 100 characters:
data("SimuHapMap") # a matrix 'counts' storing simulated data with 10000 genes, two treatments, of which each has 5 replicates
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64