CRAN Package Check Results for Package DCGL

Last updated on 2022-05-09 17:52:28 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.2 5.22 72.12 77.34 NOTE
r-devel-linux-x86_64-debian-gcc 2.1.2 4.44 55.90 60.34 NOTE
r-devel-linux-x86_64-fedora-clang 2.1.2 93.54 NOTE
r-devel-linux-x86_64-fedora-gcc 2.1.2 90.94 NOTE
r-devel-windows-x86_64 2.1.2 18.00 100.00 118.00 NOTE
r-patched-linux-x86_64 2.1.2 4.45 70.70 75.15 NOTE
r-release-linux-x86_64 2.1.2 5.87 70.04 75.91 NOTE
r-release-macos-arm64 2.1.2 32.00 NOTE
r-release-macos-x86_64 2.1.2 56.00 NOTE
r-release-windows-x86_64 2.1.2 15.00 97.00 112.00 NOTE
r-oldrel-macos-arm64 2.1.2 36.00 NOTE
r-oldrel-macos-x86_64 2.1.2 59.00 NOTE
r-oldrel-windows-ix86+x86_64 2.1.2 11.00 82.00 93.00 NOTE

Check Details

Version: 2.1.2
Check: R code for possible problems
Result: NOTE
    ASC: no visible global function definition for 'cor'
    DCe: no visible global function definition for 'pbinom'
    DCe: no visible global function definition for 'p.adjust'
    DCp: no visible global function definition for 'p.adjust'
    DRrank: no visible global function definition for 'p.adjust'
    LFC: no visible global function definition for 'jpeg'
    LFC: no visible global function definition for 'glm'
    LFC: no visible global function definition for 'predict'
    LFC: no visible global function definition for 'points'
    LFC: no visible global function definition for 'lines'
    LFC: no visible global function definition for 'dev.off'
    LRC: no visible global function definition for 'cor'
    RIF: no visible global function definition for 'cor'
    TEDscore: no visible global function definition for 'pbinom'
    WGCNA: no visible global function definition for 'cor'
    percentLinkfilter: no visible global function definition for 'cor'
    qLinkfilter: no visible global function definition for 'cor'
    qLinkfilter: no visible global function definition for 'pt'
    qLinkfilter: no visible global function definition for 'p.adjust'
    rLinkfilter: no visible global function definition for 'cor'
    varianceBasedfilter: no visible binding for global variable 'var'
    varianceBasedfilter: no visible global function definition for 'median'
    varianceBasedfilter: no visible global function definition for 'pchisq'
    visTF2target_DCL: no visible global function definition for 'pdf'
    visTF2target_DCL: no visible global function definition for 'dev.off'
    visTF_bridged_DCL: no visible global function definition for 'pdf'
    visTF_bridged_DCL: no visible global function definition for 'dev.off'
    Undefined global functions or variables:
     cor dev.off glm jpeg lines median p.adjust pbinom pchisq pdf points
     predict pt var
    Consider adding
     importFrom("grDevices", "dev.off", "jpeg", "pdf")
     importFrom("graphics", "lines", "points")
     importFrom("stats", "cor", "glm", "median", "p.adjust", "pbinom",
     "pchisq", "predict", "pt", "var")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.1.2
Check: for non-standard things in the check directory
Result: NOTE
    Found the following files/directories:
     'LFC.d.jpeg' 'LFC.s.jpeg' 'TF_bridged_DCL.pdf'
     'TF_bridged_DCL_int.pdf'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64