Last updated on 2022-05-09 09:50:49 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1 | 3.86 | 47.63 | 51.49 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.1 | 2.68 | 35.59 | 38.27 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1 | 60.23 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1 | 59.08 | NOTE | |||
| r-devel-windows-x86_64 | 0.1 | 14.00 | 60.00 | 74.00 | NOTE | |
| r-patched-linux-x86_64 | 0.1 | 3.10 | 45.02 | 48.12 | NOTE | |
| r-release-linux-x86_64 | 0.1 | 3.17 | 45.64 | 48.81 | NOTE | |
| r-release-macos-arm64 | 0.1 | 20.00 | NOTE | |||
| r-release-macos-x86_64 | 0.1 | 32.00 | NOTE | |||
| r-release-windows-x86_64 | 0.1 | 13.00 | 68.00 | 81.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.1 | 23.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.1 | 35.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 0.1 | 6.00 | 57.00 | 63.00 | NOTE |
Version: 0.1
Check: R code for possible problems
Result: NOTE
GESTr: no visible global function definition for 'rnorm'
GESTr: no visible global function definition for 'sd'
GESTr : <anonymous>: no visible global function definition for 'pnorm'
TranSAM : magChange: no visible global function definition for 'median'
TranSAM : dstat: no visible global function definition for 'sd'
TranSAM: no visible binding for global variable 'sd'
TranSAM: no visible global function definition for 'quantile'
findReplicateGroups: no visible global function definition for 'qnorm'
findReplicateGroups: no visible global function definition for 'sd'
fitGMM : simulateData: no visible global function definition for
'rnorm'
fitGMM : simulateData: no visible global function definition for 'sd'
fitGMM: no visible global function definition for 'median'
fitGMM: no visible global function definition for 'ks.test'
fitRockeDurbin: no visible global function definition for 'dist'
fitRockeDurbin : findLowGenes: no visible global function definition
for 'median'
fitRockeDurbin : findLowGenes: no visible global function definition
for 'mad'
fitRockeDurbin: no visible binding for global variable 'sd'
getMonotonicConfidences_multiclass: no visible global function
definition for 'pnorm'
getMonotonicConfidences_multiclass: no visible global function
definition for 'sd'
Undefined global functions or variables:
dist ks.test mad median pnorm qnorm quantile rnorm sd
Consider adding
importFrom("stats", "dist", "ks.test", "mad", "median", "pnorm",
"qnorm", "quantile", "rnorm", "sd")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.1
Check: Rd line widths
Result: NOTE
Rd file 'TranSAM.Rd':
\usage lines wider than 90 characters:
TranSAM(x,samples1,samples2,minChange=0.2,var_filter=0.01,maxFDR=1,changeStep=0.1,scoreFun="magChange")
\examples lines wider than 100 characters:
selected.columns <- sort(c(sample(1:ncol(ABIdata),30),which(colnames(ABIdata) %in% c("GSM194513","GSM194514","GSM194515","GSM194516","G ... [TRUNCATED]
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64