Last updated on 2022-05-09 09:50:50 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0 | 6.01 | 51.52 | 57.53 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.0 | 3.41 | 39.60 | 43.01 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.0 | 71.90 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0 | 67.62 | NOTE | |||
| r-devel-windows-x86_64 | 2.0 | 16.00 | 65.00 | 81.00 | NOTE | |
| r-patched-linux-x86_64 | 2.0 | 5.68 | 49.91 | 55.59 | NOTE | |
| r-release-linux-x86_64 | 2.0 | 5.47 | 49.19 | 54.66 | NOTE | |
| r-release-macos-arm64 | 2.0 | 20.00 | NOTE | |||
| r-release-macos-x86_64 | 2.0 | 33.00 | NOTE | |||
| r-release-windows-x86_64 | 2.0 | 16.00 | 66.00 | 82.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.0 | 21.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.0 | 50.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 2.0 | 9.00 | 74.00 | 83.00 | NOTE |
Version: 2.0
Check: dependencies in R code
Result: NOTE
'library' or 'require' calls to packages already attached by Depends:
'nnet' 'stats'
Please remove these calls from your code.
Package in Depends field not imported from: 'nnet'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.0
Check: R code for possible problems
Result: NOTE
Found an obsolete/platform-specific call in the following functions:
'spatial.AD' 'spatial.HZ'
Found the platform-specific device:
'quartz'
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
Cline.fit: no visible global function definition for 'aggregate'
Cline.fit: no visible global function definition for 'na.omit'
Cline.fit: no visible global function definition for 'mahalanobis'
Cline.fit: no visible global function definition for 'cov'
Cline.fit: no visible global function definition for 'pchisq'
Cline.plot : Beta.p: no visible global function definition for 'pbeta'
Cline.plot: no visible global function definition for 'par'
Cline.plot: no visible global function definition for 'lines'
Cline.plot: no visible global function definition for 'qchisq'
HIest : HIproposal: no visible global function definition for
'rmultinom'
HIest: no visible global function definition for 'optim'
HIest: no visible global function definition for 'runif'
gcline.fn: no visible global function definition for 'glm'
gcline.fn: no visible global function definition for 'logLik'
gcline.fn: no visible global function definition for 'multinom'
gcline.fn : LL.fn: no visible global function definition for 'dbinom'
gcline.fn : GR: no visible global function definition for 'rlnorm'
gcline.fn : GR: no visible global function definition for 'rnorm'
gcline.fn : LL.fn: no visible global function definition for 'pbeta'
gcline.fn: no visible global function definition for 'optim'
gcline.fn: no visible global function definition for 'runif'
longX2: no visible global function definition for 'pchisq'
spatial.AD : rbnorm: no visible global function definition for 'rnorm'
spatial.AD: no visible global function definition for 'dist'
spatial.AD: no visible global function definition for 'dnorm'
spatial.AD: no visible global function definition for 'rpois'
spatial.AD: no visible global function definition for 'runif'
spatial.AD: no visible global function definition for 'rbinom'
spatial.AD: no visible global function definition for 'quartz'
spatial.HZ : rbnorm: no visible global function definition for 'rnorm'
spatial.HZ: no visible global function definition for 'dist'
spatial.HZ: no visible global function definition for 'dnorm'
spatial.HZ: no visible global function definition for 'rpois'
spatial.HZ: no visible global function definition for 'rbinom'
spatial.HZ: no visible global function definition for 'quartz'
threeway : GR: no visible global function definition for 'rmultinom'
threeway: no visible global function definition for 'runif'
threeway: no visible global function definition for 'optim'
Undefined global functions or variables:
aggregate cov dbinom dist dnorm glm lines logLik mahalanobis multinom
na.omit optim par pbeta pchisq qchisq quartz rbinom rlnorm rmultinom
rnorm rpois runif
Consider adding
importFrom("grDevices", "quartz")
importFrom("graphics", "lines", "par")
importFrom("stats", "aggregate", "cov", "dbinom", "dist", "dnorm",
"glm", "logLik", "mahalanobis", "na.omit", "optim", "pbeta",
"pchisq", "qchisq", "rbinom", "rlnorm", "rmultinom",
"rnorm", "rpois", "runif")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.0
Check: Rd line widths
Result: NOTE
Rd file 'HItest3.Rd':
\examples lines wider than 100 characters:
# individuals will have nonzero contributions from each of the
Rd file 'spatial.AD.Rd':
\examples lines wider than 100 characters:
# simulate secondary contact by sorting aling the x dimension and assigning parental genotypes on each side of the centerline:
# selection, inlcuding heterozygote disadvantage at locus 2 and a DM incompatibility between 3 and 4:
G10 <- spatial.AD(minX,minY,maxX,maxY,XY,Genotypes,beta,sel,mid,h,DM,sigmac,R,M,gens=10,immigrants=TRUE)
Rd file 'spatial.HZ.Rd':
\examples lines wider than 100 characters:
# simulate secondary contact by sorting aling the x dimension and assigning parental genotypes on each side of the centerline:
# selection, inlcuding heterozygote disadvantage at locus 2 and a DM incompatibility between 3 and 4:
G10 <- spatial.HZ(minX,minY,maxX,maxY,XY,Genotypes,beta,sel,mid,h,DM,sigmad,sigmac,sigmam,R,M,gens=10,immigrants=TRUE)
Rd file 'thirdclass.Rd':
\examples lines wider than 100 characters:
# individuals will have nonzero contributions from each of the
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.0
Check: R code for possible problems
Result: NOTE
Cline.fit: no visible global function definition for 'aggregate'
Cline.fit: no visible global function definition for 'na.omit'
Cline.fit: no visible global function definition for 'mahalanobis'
Cline.fit: no visible global function definition for 'cov'
Cline.fit: no visible global function definition for 'pchisq'
Cline.plot : Beta.p: no visible global function definition for 'pbeta'
Cline.plot: no visible global function definition for 'par'
Cline.plot: no visible global function definition for 'lines'
Cline.plot: no visible global function definition for 'qchisq'
HIest : HIproposal: no visible global function definition for
'rmultinom'
HIest: no visible global function definition for 'optim'
HIest: no visible global function definition for 'runif'
gcline.fn: no visible global function definition for 'glm'
gcline.fn: no visible global function definition for 'logLik'
gcline.fn: no visible global function definition for 'multinom'
gcline.fn : LL.fn: no visible global function definition for 'dbinom'
gcline.fn : GR: no visible global function definition for 'rlnorm'
gcline.fn : GR: no visible global function definition for 'rnorm'
gcline.fn : LL.fn: no visible global function definition for 'pbeta'
gcline.fn: no visible global function definition for 'optim'
gcline.fn: no visible global function definition for 'runif'
longX2: no visible global function definition for 'pchisq'
spatial.AD : rbnorm: no visible global function definition for 'rnorm'
spatial.AD: no visible global function definition for 'dist'
spatial.AD: no visible global function definition for 'dnorm'
spatial.AD: no visible global function definition for 'rpois'
spatial.AD: no visible global function definition for 'runif'
spatial.AD: no visible global function definition for 'rbinom'
spatial.HZ : rbnorm: no visible global function definition for 'rnorm'
spatial.HZ: no visible global function definition for 'dist'
spatial.HZ: no visible global function definition for 'dnorm'
spatial.HZ: no visible global function definition for 'rpois'
spatial.HZ: no visible global function definition for 'rbinom'
threeway : GR: no visible global function definition for 'rmultinom'
threeway: no visible global function definition for 'runif'
threeway: no visible global function definition for 'optim'
Undefined global functions or variables:
aggregate cov dbinom dist dnorm glm lines logLik mahalanobis multinom
na.omit optim par pbeta pchisq qchisq rbinom rlnorm rmultinom rnorm
rpois runif
Consider adding
importFrom("graphics", "lines", "par")
importFrom("stats", "aggregate", "cov", "dbinom", "dist", "dnorm",
"glm", "logLik", "mahalanobis", "na.omit", "optim", "pbeta",
"pchisq", "qchisq", "rbinom", "rlnorm", "rmultinom",
"rnorm", "rpois", "runif")
to your NAMESPACE file.
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.0
Check: R code for possible problems
Result: NOTE
Cline.fit: no visible global function definition for ‘aggregate’
Cline.fit: no visible global function definition for ‘na.omit’
Cline.fit: no visible global function definition for ‘mahalanobis’
Cline.fit: no visible global function definition for ‘cov’
Cline.fit: no visible global function definition for ‘pchisq’
Cline.plot : Beta.p: no visible global function definition for ‘pbeta’
Cline.plot: no visible global function definition for ‘par’
Cline.plot: no visible global function definition for ‘lines’
Cline.plot: no visible global function definition for ‘qchisq’
HIest : HIproposal: no visible global function definition for
‘rmultinom’
HIest: no visible global function definition for ‘optim’
HIest: no visible global function definition for ‘runif’
gcline.fn: no visible global function definition for ‘glm’
gcline.fn: no visible global function definition for ‘logLik’
gcline.fn: no visible global function definition for ‘multinom’
gcline.fn : LL.fn: no visible global function definition for ‘dbinom’
gcline.fn : GR: no visible global function definition for ‘rlnorm’
gcline.fn : GR: no visible global function definition for ‘rnorm’
gcline.fn : LL.fn: no visible global function definition for ‘pbeta’
gcline.fn: no visible global function definition for ‘optim’
gcline.fn: no visible global function definition for ‘runif’
longX2: no visible global function definition for ‘pchisq’
spatial.AD : rbnorm: no visible global function definition for ‘rnorm’
spatial.AD: no visible global function definition for ‘dist’
spatial.AD: no visible global function definition for ‘dnorm’
spatial.AD: no visible global function definition for ‘rpois’
spatial.AD: no visible global function definition for ‘runif’
spatial.AD: no visible global function definition for ‘rbinom’
spatial.AD: no visible global function definition for ‘quartz’
spatial.HZ : rbnorm: no visible global function definition for ‘rnorm’
spatial.HZ: no visible global function definition for ‘dist’
spatial.HZ: no visible global function definition for ‘dnorm’
spatial.HZ: no visible global function definition for ‘rpois’
spatial.HZ: no visible global function definition for ‘rbinom’
spatial.HZ: no visible global function definition for ‘quartz’
threeway : GR: no visible global function definition for ‘rmultinom’
threeway: no visible global function definition for ‘runif’
threeway: no visible global function definition for ‘optim’
Undefined global functions or variables:
aggregate cov dbinom dist dnorm glm lines logLik mahalanobis multinom
na.omit optim par pbeta pchisq qchisq quartz rbinom rlnorm rmultinom
rnorm rpois runif
Consider adding
importFrom("grDevices", "quartz")
importFrom("graphics", "lines", "par")
importFrom("stats", "aggregate", "cov", "dbinom", "dist", "dnorm",
"glm", "logLik", "mahalanobis", "na.omit", "optim", "pbeta",
"pchisq", "qchisq", "rbinom", "rlnorm", "rmultinom",
"rnorm", "rpois", "runif")
to your NAMESPACE file.
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64