Last updated on 2022-05-09 09:50:53 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1 | 2.88 | 37.62 | 40.50 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1 | 2.46 | 29.49 | 31.95 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1 | 50.72 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1 | 48.17 | NOTE | |||
| r-devel-windows-x86_64 | 1.1 | 20.00 | 50.00 | 70.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1 | 3.24 | 36.42 | 39.66 | NOTE | |
| r-release-linux-x86_64 | 1.1 | 3.08 | 35.85 | 38.93 | NOTE | |
| r-release-macos-arm64 | 1.1 | 18.00 | NOTE | |||
| r-release-macos-x86_64 | 1.1 | 29.00 | NOTE | |||
| r-release-windows-x86_64 | 1.1 | 9.00 | 48.00 | 57.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.1 | 19.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.1 | 28.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 1.1 | 6.00 | 38.00 | 44.00 | NOTE |
Version: 1.1
Check: R code for possible problems
Result: NOTE
Found an obsolete/platform-specific call in the following functions:
'mat.plot.mc' 'mat.plot.recon' 'mat.plotjump' 'mat.plotroc'
Found the platform-specific device:
'windows'
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
mat.ROCcalc: no visible global function definition for 'wilcox.test'
mat.fossavg: no visible binding for global variable 'sd'
mat.jump: no visible global function definition for 'cor'
mat.mc: no visible global function definition for 'approx'
mat.plot.mc: no visible global function definition for 'par'
mat.plot.mc: no visible global function definition for 'hist'
mat.plot.mc: no visible global function definition for 'text'
mat.plot.mc: no visible global function definition for 'quantile'
mat.plot.mc: no visible global function definition for 'median'
mat.plot.mc: no visible global function definition for 'var'
mat.plot.mc: no visible global function definition for 'lines'
mat.plot.mc: no visible global function definition for 'segments'
mat.plot.recon: no visible global function definition for 'par'
mat.plot.recon: no visible global function definition for 'lines'
mat.plot.recon: no visible global function definition for 'abline'
mat.plot.recon: no visible global function definition for 'text'
mat.plotjump: no visible global function definition for 'par'
mat.plotjump: no visible global function definition for 'text'
mat.plotroc: no visible global function definition for 'dev.cur'
mat.plotroc: no visible global function definition for 'layout'
mat.plotroc: no visible global function definition for 'layout.show'
mat.plotroc: no visible global function definition for 'dev.set'
mat.plotroc: no visible global function definition for 'hist'
mat.plotroc: no visible global function definition for 'par'
mat.plotroc: no visible global function definition for 'arrows'
mat.plotroc: no visible global function definition for 'text'
mat.plotroc: no visible global function definition for 'abline'
mat.plotroc: no visible global function definition for 'points'
mat.plotroc: no visible global function definition for 'barplot'
mat.plotroc: no visible global function definition for 'polygon'
Undefined global functions or variables:
abline approx arrows barplot cor dev.cur dev.set hist layout
layout.show lines median par points polygon quantile sd segments text
var wilcox.test
Consider adding
importFrom("grDevices", "dev.cur", "dev.set")
importFrom("graphics", "abline", "arrows", "barplot", "hist", "layout",
"layout.show", "lines", "par", "points", "polygon",
"segments", "text")
importFrom("stats", "approx", "cor", "median", "quantile", "sd", "var",
"wilcox.test")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1
Check: Rd line widths
Result: NOTE
Rd file 'mat.dissim.Rd':
\usage lines wider than 90 characters:
mat.dissim(inFossil, inModern, llMod = c(), modTaxa = c(), llFoss = c(), fosTaxa = c(), numAnalogs = 1, counts = T, sitenames = 1:lengt ... [TRUNCATED]
Rd file 'mat.fossavg.Rd':
\usage lines wider than 90 characters:
mat.fossavg(dObj, modEnvCol, fossEnvCol = 0, fossCols = 0, cutoff = 0, distance = -1, wmethod = "none", numanalogs = length(dObj$positi ... [TRUNCATED]
Rd file 'mat.jumprecon.Rd':
\usage lines wider than 90 characters:
mat.jumprecon(dObj, modEnvCol, fossEnvCol, cutoff = 0, alpha = NULL, distance = -1, numanalogs = length(dObj$position[, 1]))
Rd file 'mat.mc.Rd':
\usage lines wider than 90 characters:
mat.mc(inModern, modTaxa = c(NULL, NULL), probs = c(0.05, 0.025, 0.01, 0.001), freqint = seq(0, 2, 0.02), sampleSize = length(inModern[ ... [TRUNCATED]
Rd file 'mat.roc.Rd':
\usage lines wider than 90 characters:
mat.roc(inModern, modTaxa = c(), colClasses = NULL, numAnalogs = 2, rocEvalSeq = seq(0, 2, 0.05), counts = F, aucmethod = "trap")
Rd file 'mat.roc.allpair.Rd':
\usage lines wider than 90 characters:
mat.roc.allpair(inModern, modTaxa = c(), colClasses = NULL, numAnalogs = 2, rocEvalSeq = seq(0, 2, 0.05), counts = F, aucmethod = "trap ... [TRUNCATED]
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1
Check: R code for possible problems
Result: NOTE
mat.ROCcalc: no visible global function definition for 'wilcox.test'
mat.fossavg: no visible binding for global variable 'sd'
mat.jump: no visible global function definition for 'cor'
mat.mc: no visible global function definition for 'approx'
mat.plot.mc: no visible global function definition for 'windows'
mat.plot.mc: no visible global function definition for 'par'
mat.plot.mc: no visible global function definition for 'hist'
mat.plot.mc: no visible global function definition for 'text'
mat.plot.mc: no visible global function definition for 'quantile'
mat.plot.mc: no visible global function definition for 'median'
mat.plot.mc: no visible global function definition for 'var'
mat.plot.mc: no visible global function definition for 'lines'
mat.plot.mc: no visible global function definition for 'segments'
mat.plot.recon: no visible global function definition for 'windows'
mat.plot.recon: no visible global function definition for 'par'
mat.plot.recon: no visible global function definition for 'lines'
mat.plot.recon: no visible global function definition for 'abline'
mat.plot.recon: no visible global function definition for 'text'
mat.plotjump: no visible global function definition for 'windows'
mat.plotjump: no visible global function definition for 'par'
mat.plotjump: no visible global function definition for 'text'
mat.plotroc: no visible global function definition for 'windows'
mat.plotroc: no visible global function definition for 'dev.cur'
mat.plotroc: no visible global function definition for 'layout'
mat.plotroc: no visible global function definition for 'layout.show'
mat.plotroc: no visible global function definition for 'dev.set'
mat.plotroc: no visible global function definition for 'hist'
mat.plotroc: no visible global function definition for 'par'
mat.plotroc: no visible global function definition for 'arrows'
mat.plotroc: no visible global function definition for 'text'
mat.plotroc: no visible global function definition for 'abline'
mat.plotroc: no visible global function definition for 'points'
mat.plotroc: no visible global function definition for 'barplot'
mat.plotroc: no visible global function definition for 'polygon'
Undefined global functions or variables:
abline approx arrows barplot cor dev.cur dev.set hist layout
layout.show lines median par points polygon quantile sd segments text
var wilcox.test windows
Consider adding
importFrom("grDevices", "dev.cur", "dev.set", "windows")
importFrom("graphics", "abline", "arrows", "barplot", "hist", "layout",
"layout.show", "lines", "par", "points", "polygon",
"segments", "text")
importFrom("stats", "approx", "cor", "median", "quantile", "sd", "var",
"wilcox.test")
to your NAMESPACE file.
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.1
Check: R code for possible problems
Result: NOTE
mat.ROCcalc: no visible global function definition for ‘wilcox.test’
mat.fossavg: no visible binding for global variable ‘sd’
mat.jump: no visible global function definition for ‘cor’
mat.mc: no visible global function definition for ‘approx’
mat.plot.mc: no visible global function definition for ‘par’
mat.plot.mc: no visible global function definition for ‘hist’
mat.plot.mc: no visible global function definition for ‘text’
mat.plot.mc: no visible global function definition for ‘quantile’
mat.plot.mc: no visible global function definition for ‘median’
mat.plot.mc: no visible global function definition for ‘var’
mat.plot.mc: no visible global function definition for ‘lines’
mat.plot.mc: no visible global function definition for ‘segments’
mat.plot.recon: no visible global function definition for ‘par’
mat.plot.recon: no visible global function definition for ‘lines’
mat.plot.recon: no visible global function definition for ‘abline’
mat.plot.recon: no visible global function definition for ‘text’
mat.plotjump: no visible global function definition for ‘par’
mat.plotjump: no visible global function definition for ‘text’
mat.plotroc: no visible global function definition for ‘dev.cur’
mat.plotroc: no visible global function definition for ‘layout’
mat.plotroc: no visible global function definition for ‘layout.show’
mat.plotroc: no visible global function definition for ‘dev.set’
mat.plotroc: no visible global function definition for ‘hist’
mat.plotroc: no visible global function definition for ‘par’
mat.plotroc: no visible global function definition for ‘arrows’
mat.plotroc: no visible global function definition for ‘text’
mat.plotroc: no visible global function definition for ‘abline’
mat.plotroc: no visible global function definition for ‘points’
mat.plotroc: no visible global function definition for ‘barplot’
mat.plotroc: no visible global function definition for ‘polygon’
Undefined global functions or variables:
abline approx arrows barplot cor dev.cur dev.set hist layout
layout.show lines median par points polygon quantile sd segments text
var wilcox.test
Consider adding
importFrom("grDevices", "dev.cur", "dev.set")
importFrom("graphics", "abline", "arrows", "barplot", "hist", "layout",
"layout.show", "lines", "par", "points", "polygon",
"segments", "text")
importFrom("stats", "approx", "cor", "median", "quantile", "sd", "var",
"wilcox.test")
to your NAMESPACE file.
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64