Last updated on 2022-05-09 09:50:54 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.4 | 5.73 | 59.96 | 65.69 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.4 | 5.11 | 46.61 | 51.72 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.4 | 86.10 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.4 | 78.94 | NOTE | |||
| r-devel-windows-x86_64 | 1.4 | 20.00 | 81.00 | 101.00 | NOTE | |
| r-patched-linux-x86_64 | 1.4 | 7.30 | 57.72 | 65.02 | NOTE | |
| r-release-linux-x86_64 | 1.4 | 6.44 | 57.10 | 63.54 | NOTE | |
| r-release-macos-arm64 | 1.4 | 27.00 | NOTE | |||
| r-release-macos-x86_64 | 1.4 | 42.00 | NOTE | |||
| r-release-windows-x86_64 | 1.4 | 14.00 | 78.00 | 92.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.4 | 38.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.4 | 58.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 1.4 | 16.00 | 73.00 | 89.00 | NOTE |
Version: 1.4
Check: package dependencies
Result: NOTE
Depends: includes the non-default packages:
'car', 'pdist', 'pls', 'gplots', 'mvtnorm', 'robustbase', 'gtools',
'bitops', 'caTools', 'pcaPP', 'rrcov'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.4
Check: dependencies in R code
Result: NOTE
'library' or 'require' calls to packages already attached by Depends:
'car' 'gplots' 'pdist' 'pls' 'rrcov'
Please remove these calls from your code.
Packages in Depends field not imported from:
'bitops' 'caTools' 'car' 'gplots' 'gtools' 'mvtnorm' 'pcaPP' 'pdist'
'pls' 'robustbase' 'rrcov'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.4
Check: R code for possible problems
Result: NOTE
Plot.pca.loading: no visible global function definition for 'read.csv'
Plot.pca.loading: no visible global function definition for 'dev.new'
Plot.pca.loading: no visible global function definition for 'axis'
Plot.pca.loading: no visible global function definition for 'text'
Plot.pca.loading: no visible global function definition for
'dev.copy2pdf'
Plot.pca.pvalues: no visible global function definition for 'read.csv'
Plot.pca.pvalues: no visible global function definition for 'dev.new'
Plot.pca.pvalues: no visible global function definition for 'axis'
Plot.pca.pvalues: no visible global function definition for 'text'
Plot.pca.pvalues: no visible global function definition for
'dev.copy2pdf'
Plot.pca.score: no visible global function definition for 'read.csv'
Plot.pca.score: no visible global function definition for 'dev.new'
Plot.pca.score: no visible global function definition for 'axis'
Plot.pca.score: no visible global function definition for 'dataEllipse'
Plot.pca.score: no visible global function definition for 'text'
Plot.pca.score: no visible global function definition for
'dev.copy2pdf'
Plot.plsda: no visible global function definition for 'read.csv'
Plot.plsda: no visible global function definition for 'text'
Plot.plsda: no visible global function definition for 'axis'
Plot.plsda: no visible global function definition for 'dataEllipse'
Plot.plsda: no visible global function definition for 'dev.copy2pdf'
Plot.plsda: no visible global function definition for 'dev.new'
box.plot: no visible global function definition for 'read.csv'
box.plot: no visible global function definition for 'pdf'
box.plot: no visible global function definition for 'boxplot'
box.plot: no visible global function definition for 'dev.off'
chose.driver: no visible global function definition for 'read.csv'
col.pvalues: no visible global function definition for 'read.csv'
col.pvalues: no visible global function definition for 'write.csv'
explore.data: no visible global function definition for 'read.csv'
explore.data: no visible global function definition for 'write.csv'
explore.data: no visible global function definition for 'runif'
explore.data: no visible binding for global variable 'sd'
explore.data: no visible binding for global variable 'median'
explore.data: no visible global function definition for 'prcomp'
explore.data: no visible global function definition for 'barplot'
explore.data: no visible global function definition for 'dev.copy2pdf'
explore.data: no visible global function definition for 'dev.new'
explore.data: no visible global function definition for 'T2.test'
explore.data: no visible global function definition for 'pf'
oplsda: no visible global function definition for 'read.csv'
oplsda: no visible global function definition for 'text'
oplsda: no visible global function definition for 'axis'
oplsda: no visible global function definition for 'dataEllipse'
oplsda: no visible global function definition for 'write.csv'
oplsda: no visible global function definition for 'dev.copy2pdf'
oplsda: no visible global function definition for 'cov'
oplsda: no visible binding for global variable 'sd'
oplsda: no visible global function definition for 'sd'
oplsda: no visible global function definition for 'dev.new'
oplsda: no visible global function definition for 'prcomp'
oplsda: no visible global function definition for 'pdf'
oplsda: no visible global function definition for 'dev.off'
ostocsy: no visible global function definition for 'read.csv'
ostocsy: no visible global function definition for 'cor'
ostocsy: no visible global function definition for 'colorpanel'
ostocsy: no visible global function definition for 'image'
ostocsy: no visible global function definition for 'axis'
ostocsy: no visible global function definition for 'dev.copy2pdf'
ostocsy: no visible global function definition for 'write.csv'
ostocsy: no visible global function definition for 'dev.new'
outlier: no visible global function definition for 'read.csv'
outlier: no visible global function definition for 'var'
outlier: no visible global function definition for 'pdist'
outlier: no visible global function definition for 'write.csv'
plsda: no visible global function definition for 'read.csv'
plsda: no visible global function definition for 'plsr'
plsda: no visible global function definition for 'write.csv'
plsda: no visible global function definition for 'axis'
plsda: no visible global function definition for 'text'
plsda: no visible global function definition for 'dev.copy2pdf'
plsda: no visible global function definition for 'dev.new'
pvalues: no visible global function definition for 'read.csv'
pvalues: no visible global function definition for 'p.adjust'
pvalues: no visible global function definition for 'write.csv'
ransy: no visible global function definition for 'read.csv'
ransy: no visible global function definition for 'text'
ransy: no visible global function definition for 'dev.copy2pdf'
shapiro: no visible global function definition for 'read.csv'
shapiro: no visible global function definition for 'shapiro.test'
shapiro: no visible global function definition for 'write.csv'
stocsy: no visible global function definition for 'read.csv'
stocsy: no visible global function definition for 'cor'
stocsy: no visible global function definition for 'colorpanel'
stocsy: no visible global function definition for 'image'
stocsy: no visible global function definition for 'axis'
stocsy: no visible global function definition for 'dev.copy2pdf'
stocsy: no visible global function definition for 'write.csv'
stocsy: no visible global function definition for 'dev.new'
stocsy.1d: no visible global function definition for 'read.csv'
stocsy.1d: no visible global function definition for 'cor'
stocsy.1d: no visible global function definition for 'rich.colors'
stocsy.1d: no visible global function definition for 'text'
stocsy.1d: no visible global function definition for 'dev.copy2pdf'
univariate: no visible global function definition for 'read.csv'
univariate: no visible global function definition for 'runif'
univariate: no visible global function definition for 'write.csv'
univariate: no visible global function definition for 'sd'
volcano: no visible global function definition for 'read.csv'
volcano: no visible global function definition for 'write.csv'
volcano: no visible global function definition for 'pdf'
volcano: no visible global function definition for 'text'
volcano: no visible global function definition for 'axis'
volcano: no visible global function definition for 'dev.off'
volcano: no visible global function definition for 'dev.new'
welch: no visible global function definition for 'read.csv'
welch: no visible global function definition for 't.test'
welch: no visible global function definition for 'write.csv'
wmw: no visible global function definition for 'read.csv'
wmw: no visible global function definition for 'wilcox.test'
wmw: no visible global function definition for 'write.csv'
Undefined global functions or variables:
T2.test axis barplot boxplot colorpanel cor cov dataEllipse
dev.copy2pdf dev.new dev.off image median p.adjust pdf pdist pf plsr
prcomp read.csv rich.colors runif sd shapiro.test t.test text var
wilcox.test write.csv
Consider adding
importFrom("grDevices", "dev.copy2pdf", "dev.new", "dev.off", "pdf")
importFrom("graphics", "axis", "barplot", "boxplot", "image", "text")
importFrom("stats", "cor", "cov", "median", "p.adjust", "pf", "prcomp",
"runif", "sd", "shapiro.test", "t.test", "var",
"wilcox.test")
importFrom("utils", "read.csv", "write.csv")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 1.4
Check: Rd line widths
Result: NOTE
Rd file 'Plot.pca.score.Rd':
\examples lines wider than 100 characters:
ylab = ylab, xlim = lim, ylim = lim, pch = 19, sub = paste("Cumulative Proportion of Variance Explained = ",
Rd file 'oplsda.Rd':
\examples lines wider than 100 characters:
ylab = ylab, xlim = lim, ylim = lim, pch = 19, sub = paste("Cumulative Proportion of Variance Explained = ",
Rd file 'univariate.Rd':
\usage lines wider than 90 characters:
univariate(file, imputation = FALSE, imput, normalize = TRUE, multi.test = TRUE, plot.volcano = FALSE, save.boxplot=TRUE)
Rd file 'volcano.Rd':
\examples lines wider than 100 characters:
sep = ""), sub = "(Variables in Blue are significant (Pvalue<0.05) and showed Fold Changes >1.2 or <0.8)")
j, sep = ""), sub = "(Variables in Blue are significant (Pvalue<0.05) and showed Fold Changes >1.2 or <0.8)")
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64