Last updated on 2022-05-21 05:52:40 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3 | 34.46 | 654.19 | 688.65 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3 | 30.51 | 470.76 | 501.27 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3 | 772.32 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.3 | 758.45 | ERROR | |||
| r-devel-windows-x86_64 | 0.1.3 | 52.00 | 762.00 | 814.00 | ERROR | |
| r-patched-linux-x86_64 | 0.1.3 | 30.21 | 603.13 | 633.34 | OK | |
| r-release-linux-x86_64 | 0.1.3 | 27.44 | 615.42 | 642.86 | OK | |
| r-release-macos-arm64 | 0.1.3 | 381.00 | ERROR | |||
| r-release-macos-x86_64 | 0.1.3 | 326.00 | OK | |||
| r-release-windows-x86_64 | 0.1.3 | 64.00 | 778.00 | 842.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.3 | 192.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.1.3 | 276.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 0.1.3 | 82.00 | 794.00 | 876.00 | OK |
Version: 0.1.3
Check: examples
Result: ERROR
Running examples in 'voluModel-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: smoothRaster
> ### Title: Smooth rasters
> ### Aliases: smoothRaster
> ### Keywords: dataPrep
>
> ### ** Examples
>
> library(raster)
Loading required package: sp
> library(fields)
Loading required package: spam
Spam version 2.8-0 (2022-01-05) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.
Attaching package: 'spam'
The following objects are masked from 'package:base':
backsolve, forwardsolve
Loading required package: viridis
Loading required package: viridisLite
Try help(fields) to get started.
> # Create sample raster
> r <- raster(ncol=100, nrow=100)
> values(r) <- 1:10000
>
> # Introduce a "bubble"
> values(r)[520:525] <- 9999
> plot(r)
>
> # Smooth bubble with smoothRaster
> smoothedRaster <- smoothRaster(r)
Warning:
Grid searches over lambda (nugget and sill variances) with minima at the endpoints:
(GCV) Generalized Cross-Validation
minimum at right endpoint lambda = 3.025469e-06 (eff. df= 593.75 )
> plot(smoothedRaster)
>
> fastSmooth <- smoothRaster(r, fast = TRUE, aRange = 3.0)
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'diag': Lapack routine dgesv: system is exactly singular: U[1,1] = 0
Calls: smoothRaster ... solve -> solve -> solve.default -> .handleSimpleError -> h
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: examples
Result: ERROR
Running examples in ‘voluModel-Ex.R’ failed
The error most likely occurred in:
> ### Name: smoothRaster
> ### Title: Smooth rasters
> ### Aliases: smoothRaster
> ### Keywords: dataPrep
>
> ### ** Examples
>
> library(raster)
Loading required package: sp
> library(fields)
Loading required package: spam
Spam version 2.8-0 (2022-01-05) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.
Attaching package: ‘spam’
The following objects are masked from ‘package:base’:
backsolve, forwardsolve
Loading required package: viridis
Loading required package: viridisLite
Try help(fields) to get started.
> # Create sample raster
> r <- raster(ncol=100, nrow=100)
> values(r) <- 1:10000
>
> # Introduce a "bubble"
> values(r)[520:525] <- 9999
> plot(r)
>
> # Smooth bubble with smoothRaster
> smoothedRaster <- smoothRaster(r)
Warning:
Grid searches over lambda (nugget and sill variances) with minima at the endpoints:
(GCV) Generalized Cross-Validation
minimum at right endpoint lambda = 3.025469e-06 (eff. df= 593.75 )
> plot(smoothedRaster)
>
> fastSmooth <- smoothRaster(r, fast = TRUE, aRange = 3.0)
Error in h(simpleError(msg, call)) :
error in evaluating the argument 'x' in selecting a method for function 'diag': Lapack routine dgesv: system is exactly singular: U[1,1] = 0
Calls: smoothRaster ... solve -> solve -> solve.default -> .handleSimpleError -> h
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘a_Introduction.Rmd’ using rmarkdown
Loading required package: sp
Please note that rgdal will be retired by the end of 2023,
plan transition to sf/stars/terra functions using GDAL and PROJ
at your earliest convenience.
rgdal: version: 1.5-32, (SVN revision 1176)
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 3.4.2, released 2022/03/08
Path to GDAL shared files: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rgdal/gdal
GDAL binary built with GEOS: FALSE
Loaded PROJ runtime: Rel. 8.2.1, January 1st, 2022, [PJ_VERSION: 821]
Path to PROJ shared files: /Volumes/Builds/packages/big-sur-arm64/Rlib/4.2/rgdal/proj
PROJ CDN enabled: FALSE
Linking to sp version:1.4-7
To mute warnings of possible GDAL/OSR exportToProj4() degradation,
use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.
Loading required package: lattice
Attaching package: 'latticeExtra'
The following object is masked from 'package:ggplot2':
layer
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Warning: Use of `occs[[xIndex]]` is discouraged. Use `.data[[xIndex]]` instead.
Warning: Use of `occs[[yIndex]]` is discouraged. Use `.data[[yIndex]]` instead.
Using decimalLongitude, decimalLatitude, and depth
as x, y, and z coordinates, respectively.
Using decimalLongitude, decimalLatitude, and depth
as x, y, and z coordinates, respectively.
Warning: Removed 174 rows containing non-finite values (stat_boxplot).
Warning: Removed 174 rows containing non-finite values (stat_boxplot).
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Quitting from lines 214-221 (a_Introduction.Rmd)
Error: processing vignette 'a_Introduction.Rmd' failed with diagnostics:
[distance] If 'x' is a SpatVector, 'y' should be a SpatVector or missing
--- failed re-building ‘a_Introduction.Rmd’
--- re-building ‘b_RasterProcessing.Rmd’ using rmarkdown
Loading required package: spam
Spam version 2.8-0 (2022-01-05) is loaded.
Type 'help( Spam)' or 'demo( spam)' for a short introduction
and overview of this package.
Help for individual functions is also obtained by adding the
suffix '.spam' to the function name, e.g. 'help( chol.spam)'.
Attaching package: 'spam'
The following objects are masked from 'package:base':
backsolve, forwardsolve
Loading required package: viridis
Try help(fields) to get started.
--- finished re-building ‘b_RasterProcessing.Rmd’
--- re-building ‘c_DataSampling.Rmd’ using rmarkdown
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Warning: Use of `occs[[xIndex]]` is discouraged. Use `.data[[xIndex]]` instead.
Warning: Use of `occs[[yIndex]]` is discouraged. Use `.data[[yIndex]]` instead.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
--- finished re-building ‘c_DataSampling.Rmd’
--- re-building ‘d_Visualization.Rmd’ using rmarkdown
Quitting from lines 24-117 (d_Visualization.Rmd)
Error: processing vignette 'd_Visualization.Rmd' failed with diagnostics:
[distance] If 'x' is a SpatVector, 'y' should be a SpatVector or missing
--- failed re-building ‘d_Visualization.Rmd’
--- re-building ‘e_GLMWorkflow.Rmd’ using rmarkdown
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Using decimalLongitude and decimalLatitude
as x and y coordinates, respectively.
Joining, by = c("decimalLongitude", "decimalLatitude")
Joining, by = c("decimalLongitude", "decimalLatitude")
Joining, by = c("decimalLongitude", "decimalLatitude")
Warning: Use of `occ_dat[[occ_datIndices$xIndex]]` is discouraged. Use `.data[[occ_datIndices$xIndex]]` instead.
Warning: Use of `occ_dat[[occ_datIndices$yIndex]]` is discouraged. Use `.data[[occ_datIndices$yIndex]]` instead.
Quitting from lines 138-145 (e_GLMWorkflow.Rmd)
Error: processing vignette 'e_GLMWorkflow.Rmd' failed with diagnostics:
[distance] If 'x' is a SpatVector, 'y' should be a SpatVector or missing
--- failed re-building ‘e_GLMWorkflow.Rmd’
SUMMARY: processing the following files failed:
‘a_Introduction.Rmd’ ‘d_Visualization.Rmd’ ‘e_GLMWorkflow.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-macos-arm64