Last updated on 2022-05-23 08:51:31 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3-7 | 20.06 | 347.60 | 367.66 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.3-7 | 14.24 | 266.21 | 280.45 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.3-7 | 451.45 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 0.3-7 | 448.94 | NOTE | |||
| r-devel-windows-x86_64 | 0.3-7 | 51.00 | 124.00 | 175.00 | NOTE | --no-vignettes |
| r-patched-linux-x86_64 | 0.3-7 | 19.24 | 342.07 | 361.31 | NOTE | |
| r-release-linux-x86_64 | 0.3-7 | NOTE | ||||
| r-release-macos-arm64 | 0.3-7 | 377.00 | NOTE | |||
| r-release-macos-x86_64 | 0.3-7 | 354.00 | NOTE | |||
| r-release-windows-x86_64 | 0.3-7 | 49.00 | 137.00 | 186.00 | NOTE | --no-vignettes |
| r-oldrel-macos-arm64 | 0.3-7 | 443.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.3-7 | 553.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 0.3-7 | 35.00 | 179.00 | 214.00 | NOTE | --no-vignettes |
Version: 0.3-7
Check: dependencies in R code
Result: NOTE
'library' or 'require' call to 'codetools' which was already attached by Depends.
Please remove these calls from your code.
Packages in Depends field not imported from:
'codetools' 'gss'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.3-7
Check: R code for possible problems
Result: NOTE
Found an obsolete/platform-specific call in the following functions:
'plot.ssanova' 'plot.ssanova0'
Found the platform-specific device:
'X11'
dev.new() is the preferred way to open a new device, in the unlikely
event one is needed.
as.spikeTrain: no visible global function definition for 'spikeTimes'
gamObj.gampsth: no visible binding for global variable 'PoissonF'
gammaMLE: multiple local function definitions for 'rFct' with different
formal arguments
gssObj.gsspsth: no visible binding for global variable 'gfit'
gssObj.gsspsth0: no visible binding for global variable 'gfit'
gsslockedTrain: no visible global function definition for 'gssanova'
gsslockedTrain0: no visible global function definition for 'gssanova0'
gsspsth: no visible global function definition for 'gssanova'
gsspsth0: no visible global function definition for 'gssanova0'
invgaussMLE: multiple local function definitions for 'rFct' with
different formal arguments
lines.CountingProcessSamplePath: no visible binding for global variable
'st'
mkAR: no visible binding for global variable 'lN.1'
mkM2U: no visible global function definition for 'ssden'
mkM2U : <anonymous>: no visible global function definition for 'dssden'
mkM2U : dFct: no visible global function definition for 'dssden'
mkPostSimAnalysis: no visible global function definition for
'findGlobals'
plot.ssanova: no visible global function definition for 'X11'
plot.ssanova0: no visible global function definition for 'X11'
qqDuration: no visible binding for global variable 'yi'
qqDuration: no visible binding for global variable 'si'
reportHTML.gam: no visible global function definition for 'png'
reportHTML.gam: no visible global function definition for 'dev.off'
reportHTML.repeatedTrain: no visible global function definition for
'png'
reportHTML.repeatedTrain: no visible global function definition for
'dev.off'
reportHTML.spikeTrain: no visible global function definition for 'png'
reportHTML.spikeTrain: no visible global function definition for
'dev.off'
reportHTML.spikeTrain : <anonymous>: no visible global function
definition for 'png'
reportHTML.spikeTrain : <anonymous>: no visible global function
definition for 'dev.off'
thinProcess: no visible binding for global variable 'targetFct'
thinProcess: no visible binding for global variable 'posMax'
Undefined global functions or variables:
PoissonF X11 dev.off dssden findGlobals gfit gssanova gssanova0 lN.1
png posMax si spikeTimes ssden st targetFct yi
Consider adding
importFrom("grDevices", "X11", "dev.off", "png")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.3-7
Check: Rd line widths
Result: NOTE
Rd file 'brt4df.Rd':
\examples lines wider than 100 characters:
n1S.fitA <- gam(event ~ te(rlN.1,rsN.1,bs="cr") + rtN.1,data=n1.cal2sDF,family=binomial(link="logit"))
Rd file 'cockroachALData.Rd':
\examples lines wider than 100 characters:
plot(e060817mixN1PSTH$mids-0.02,e060817mixN1PSTH$ciUp,type="n",ylim=c(0,max(e060817mixN1PSTH$ciUp)),xlim=c(5,14),xlab="Time (s)",ylab=" ... [TRUNCATED]
polygon(c(e060817mixN1PSTH$mids-0.02,rev(e060817mixN1PSTH$mids-0.02)),c(e060817mixN1PSTH$ciLow,rev(e060817mixN1PSTH$ciUp)),col=rgb(1,0, ... [TRUNCATED]
polygon(c(e060817citronN1PSTH$mids,rev(e060817citronN1PSTH$mids)),c(e060817citronN1PSTH$ciLow,rev(e060817citronN1PSTH$ciUp)),col=rgb(1, ... [TRUNCATED]
polygon(c(e060817terpiN1PSTH$mids-0.04,rev(e060817terpiN1PSTH$mids-0.04)),c(e060817terpiN1PSTH$ciLow,rev(e060817terpiN1PSTH$ciUp)),col= ... [TRUNCATED]
plot(e060817mixN2PSTH$mids-0.02,e060817mixN2PSTH$ciUp,type="n",ylim=c(0,max(e060817mixN2PSTH$ciUp)),xlim=c(5,14),xlab="Time (s)",ylab=" ... [TRUNCATED]
polygon(c(e060817mixN2PSTH$mids-0.02,rev(e060817mixN2PSTH$mids-0.02)),c(e060817mixN2PSTH$ciLow,rev(e060817mixN2PSTH$ciUp)),col=rgb(1,0, ... [TRUNCATED]
polygon(c(e060817citronN2PSTH$mids,rev(e060817citronN2PSTH$mids)),c(e060817citronN2PSTH$ciLow,rev(e060817citronN2PSTH$ciUp)),col=rgb(1, ... [TRUNCATED]
polygon(c(e060817terpiN2PSTH$mids-0.04,rev(e060817terpiN2PSTH$mids-0.04)),c(e060817terpiN2PSTH$ciLow,rev(e060817terpiN2PSTH$ciUp)),col= ... [TRUNCATED]
plot(e060817mixN3PSTH$mids-0.02,e060817mixN3PSTH$ciUp,type="n",ylim=c(0,max(e060817mixN3PSTH$ciUp)),xlim=c(5,14),xlab="Time (s)",ylab=" ... [TRUNCATED]
polygon(c(e060817mixN3PSTH$mids-0.02,rev(e060817mixN3PSTH$mids-0.02)),c(e060817mixN3PSTH$ciLow,rev(e060817mixN3PSTH$ciUp)),col=rgb(1,0, ... [TRUNCATED]
polygon(c(e060817citronN3PSTH$mids,rev(e060817citronN3PSTH$mids)),c(e060817citronN3PSTH$ciLow,rev(e060817citronN3PSTH$ciUp)),col=rgb(1, ... [TRUNCATED]
polygon(c(e060817terpiN3PSTH$mids-0.04,rev(e060817terpiN3PSTH$mids-0.04)),c(e060817terpiN3PSTH$ciLow,rev(e060817terpiN3PSTH$ciUp)),col= ... [TRUNCATED]
Rd file 'crossGeneral.Rd':
\examples lines wider than 100 characters:
res <- crossGeneral(tMax=1,h=1/n,cFct=cFT1p1,bFct=bFT1p1.ii,withBounds=TRUE,Lplus=TRUE)
res <- crossGeneral(tMax=1,h=1/n,cFct=cFT1p3,bFct=function(t) 3-2*t,withBounds=TRUE,Lplus=TRUE)
res <- crossGeneral(tMax=1,h=1/n,cFct=cFT1p3,bFct=function(t) 3-2*t,withBounds=TRUE,Lplus=TRUE)
res <- crossGeneral(tMax=1,h=1/n,cFct=function(t) 1+sin(t),bFct=function(t) cos(t),withBounds=TRUE,Lplus=TRUE)
res <- crossGeneral(tMax=1,h=1/n,cFct=function(t) 1+sin(t),bFct=function(t) rep(0.5,length(t)),withBounds=TRUE,Lplus=T ... [TRUNCATED]
Rd file 'df4counts.Rd':
\examples lines wider than 100 characters:
psth(CAL1V[["neuron 1"]],stimTimeCourse=c(4.49,4.99),breaks=c(bw=0.5,step=0.05),colCI=2,xlim=c(0,10))
Rd file 'frt.Rd':
\examples lines wider than 100 characters:
n1S.fitA <- gam(event ~ te(rlN.1,rsN.1,bs="cr",fx=TRUE) + rtN.1,data=n1.cal2sDF,family=binomial(link="logit"))
Rd file 'isi.Rd':
\examples lines wider than 100 characters:
e060517spontDFn1lGF <- gssanova(event ~ lN.1*isi1+isi2, data=e060517spontDFn1l, family="binomial", seed=20061001)
Rd file 'mkGLMdf.Rd':
\examples lines wider than 100 characters:
interData.lt1v2 <- lockedTrain(interData[["post2"]],interData[["post1"]],laglim=c(-0.03,0.05),c(0,60))
dfN2.fit0 <- gam(event ~ s(lN.1,bs="cr") + s(lN.2,bs="cr"), data=dfN2, family=poisson, subset=(dfN2$lN.1 <=0.1))
plot(xx,exp(-cumsum(exp(predict(dfN2.fit0,data.frame(lN.1=rep(100,300)*0.001,lN.2=(1:300)*0.001))))),type="l")
dfN2.fit1 <- gam(event ~ s(lN.1,bs="cr") + s(lN.2,bs="cr") + s(lN.3,bs="cr"), data=dfN2, family=poisson, subset=(dfN2$lN.1 <=0.1) & (df ... [TRUNCATED]
dfN3.fit0 <- gam(event ~ s(lN.1,k=20,bs="cr") + s(lN.3,k=15,bs="cr"),data=dfN3,family=poisson, subset=(dfN3$lN.1 <=0.1))
dfN4.fit0 <- gam(event ~ s(lN.1,k=20,bs="cr") + s(lN.4,k=15,bs="cr"),data=dfN4,family=poisson, subset=(dfN4$lN.1 <=0.1))
Rd file 'plot.frt.Rd':
\examples lines wider than 100 characters:
n1S.fitA <- gam(event ~ te(rlN.1,rsN.1,bs="cr",fx=TRUE) + rtN.1,data=n1.cal2sDF,family=binomial(link="logit"))
Rd file 'plot.transformedTrain.Rd':
\examples lines wider than 100 characters:
n1S.fitA <- gam(event ~ te(rlN.1,rsN.1,bs="cr",fx=TRUE) + rtN.1,data=n1.cal2sDF,family=binomial(link="logit"))
Rd file 'predictLogProb.Rd':
\examples lines wider than 100 characters:
reportHTML(e060824spont[["neuron 1"]],filename="e060824spont_1",otherST=e060824spont[c(2)],maxiter=100)
system.time(GF1 <- gssanova(event ~ e1t+i1t, data=subset(DFA,time<=29),family="binomial",seed=20061001))
system.time(GF2 <- gssanova(event ~ e1t+i1t, data=subset(DFA,time>29),family="binomial",seed=20061001))
system.time(GF3 <- gssanova(event ~ e1t*i1t, data=subset(DFA,time<=29),family="binomial",seed=20061001))
system.time(GF4 <- gssanova(event ~ e1t*i1t, data=subset(DFA,time>29),family="binomial",seed=20061001))
Rd file 'reportHTML.spikeTrain.Rd':
\examples lines wider than 100 characters:
reportHTML(e070528spont[["neuron 1"]],"e070528spontN1",otherST=e070528spont[-1],laglim=c(-1,1)*0.25,forceTT=FALSE)
Rd file 'summary.transformedTrain.Rd':
\examples lines wider than 100 characters:
n1S.fitA <- gam(event ~ te(rlN.1,rsN.1,bs="cr",fx=TRUE) + rtN.1,data=n1.cal2sDF,family=binomial(link="logit"))
Rd file 'thinProcess.Rd':
\examples lines wider than 100 characters:
reportHTML(e060824spont[["neuron 1"]],filename="e060824spont_1",otherST=e060824spont[c(2)],maxiter=100)
(GF2.e060824spont.1.logProb <- predictLogProb(GF2.e060824spont.1[[1]][[1]],subset(DFA,time>29.5))+predictLogProb(GF2.e060824spont.1[[2] ... [TRUNCATED]
(GF1.e060824spont.1.logProb <- predictLogProb(GF1.e060824spont.1[[1]][[1]],subset(DFA,time>29.5))+predictLogProb(GF1.e060824spont.1[[2] ... [TRUNCATED]
PSAFct <- mkPostSimAnalysis(e060824spont[[1]],1,29.5,list(GF1.e060824spont.1[[1]][[1]],GF2.e060824spont.1[[1]][[1]]),mkDF.e060824spont. ... [TRUNCATED]
plot(sim1.e060824spont.1.lpp1,sim1.e060824spont.1.lpp2,main="log prob with M2 vs log prob with M1 when M1 is true",xlab="log prob with ... [TRUNCATED]
segments(e060824spont.1.lpp1,0,e060824spont.1.lpp1,sum(sim1.e060824spont.1.lpp1 <= e060824spont.1.lpp1)/nbRep,col=2,lwd=2)
segments(-1600,sum(sim1.e060824spont.1.lpp1 <= e060824spont.1.lpp1)/nbRep,e060824spont.1.lpp1,sum(sim1.e060824spont.1.lpp1 <= e060824sp ... [TRUNCATED]
segments(e060824spont.1.lpp2,0,e060824spont.1.lpp2,sum(sim1.e060824spont.1.lpp2 <= e060824spont.1.lpp2)/nbRep,col=2,lwd=2)
segments(-1800,sum(sim1.e060824spont.1.lpp2 <= e060824spont.1.lpp2)/nbRep,e060824spont.1.lpp2,sum(sim1.e060824spont.1.lpp2 <= e060824sp ... [TRUNCATED]
plot(ecdf(sim1.e060824spont.1.lpp1-sim1.e060824spont.1.lpp2),pch=".",main="log prob with M1 - log prob with M2 when M1 is true")
segments(e060824spont.1.lppDiff,0,e060824spont.1.lppDiff,sum(sim1.e060824spont.1.lpp1-sim1.e060824spont.1.lpp2<=e060824spont.1.lppDiff) ... [TRUNCATED]
segments(-10,sum(sim1.e060824spont.1.lpp1-sim1.e060824spont.1.lpp2<=e060824spont.1.lppDiff)/nbRep,e060824spont.1.lppDiff,sum(sim1.e0608 ... [TRUNCATED]
plot(sim2.e060824spont.1.lpp1,sim2.e060824spont.1.lpp2,main="log prob with M2 vs log prob with M1 when M2 is true",xlab="log prob with ... [TRUNCATED]
segments(e060824spont.1.lpp1,0,e060824spont.1.lpp1,sum(sim2.e060824spont.1.lpp1 <= e060824spont.1.lpp1)/nbRep,col=2,lwd=2)
segments(-2000,sum(sim2.e060824spont.1.lpp1 <= e060824spont.1.lpp1)/nbRep,e060824spont.1.lpp1,sum(sim2.e060824spont.1.lpp1 <= e060824sp ... [TRUNCATED]
segments(e060824spont.1.lpp2,0,e060824spont.1.lpp2,sum(sim2.e060824spont.1.lpp2 <= e060824spont.1.lpp2)/nbRep,col=2,lwd=2)
segments(-2000,sum(sim2.e060824spont.1.lpp2 <= e060824spont.1.lpp2)/nbRep,e060824spont.1.lpp2,sum(sim2.e060824spont.1.lpp2 <= e060824sp ... [TRUNCATED]
xlim=c(min(c(-e060824spont.1.lppDiff,sim2.e060824spont.1.lpp2-sim2.e060824spont.1.lpp1)),max(sim2.e060824spont.1.lpp2-sim2.e060824spont ... [TRUNCATED]
plot(ecdf(sim2.e060824spont.1.lpp2-sim2.e060824spont.1.lpp1),pch=".",main="log prob with M2 - log prob with M1 when M2 is true",xlim=xl ... [TRUNCATED]
Rd file 'transformedTrain.Rd':
\examples lines wider than 100 characters:
n1S.fitA <- gam(event ~ te(rlN.1,rsN.1,bs="cr",fx=TRUE) + rtN.1,data=n1.cal2sDF,family=binomial(link="logit"))
These lines will be truncated in the PDF manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.3-7
Check: compiled code
Result: NOTE
File ‘STAR/libs/STAR.so’:
Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
It is good practice to register native routines and to disable symbol
search.
See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.3-7
Flags: --no-vignettes
Check: dependencies in R code
Result: NOTE
'library' or 'require' call to 'codetools' which was already attached by Depends.
Please remove these calls from your code.
Packages in Depends field not imported from:
'codetools' 'gss'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.3-7
Flags: --no-vignettes
Check: R code for possible problems
Result: NOTE
as.spikeTrain: no visible global function definition for 'spikeTimes'
gamObj.gampsth: no visible binding for global variable 'PoissonF'
gammaMLE: multiple local function definitions for 'rFct' with different
formal arguments
gssObj.gsspsth: no visible binding for global variable 'gfit'
gssObj.gsspsth0: no visible binding for global variable 'gfit'
gsslockedTrain: no visible global function definition for 'gssanova'
gsslockedTrain0: no visible global function definition for 'gssanova0'
gsspsth: no visible global function definition for 'gssanova'
gsspsth0: no visible global function definition for 'gssanova0'
invgaussMLE: multiple local function definitions for 'rFct' with
different formal arguments
lines.CountingProcessSamplePath: no visible binding for global variable
'st'
mkAR: no visible binding for global variable 'lN.1'
mkM2U: no visible global function definition for 'ssden'
mkM2U : <anonymous>: no visible global function definition for 'dssden'
mkM2U : dFct: no visible global function definition for 'dssden'
mkPostSimAnalysis: no visible global function definition for
'findGlobals'
plot.ssanova: no visible global function definition for 'X11'
plot.ssanova0: no visible global function definition for 'X11'
qqDuration: no visible binding for global variable 'yi'
qqDuration: no visible binding for global variable 'si'
reportHTML.gam: no visible global function definition for 'png'
reportHTML.gam: no visible global function definition for 'dev.off'
reportHTML.repeatedTrain: no visible global function definition for
'png'
reportHTML.repeatedTrain: no visible global function definition for
'dev.off'
reportHTML.spikeTrain: no visible global function definition for 'png'
reportHTML.spikeTrain: no visible global function definition for
'dev.off'
reportHTML.spikeTrain : <anonymous>: no visible global function
definition for 'png'
reportHTML.spikeTrain : <anonymous>: no visible global function
definition for 'dev.off'
thinProcess: no visible binding for global variable 'targetFct'
thinProcess: no visible binding for global variable 'posMax'
Undefined global functions or variables:
PoissonF X11 dev.off dssden findGlobals gfit gssanova gssanova0 lN.1
png posMax si spikeTimes ssden st targetFct yi
Consider adding
importFrom("grDevices", "X11", "dev.off", "png")
to your NAMESPACE file.
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.3-7
Check: R code for possible problems
Result: NOTE
as.spikeTrain: no visible global function definition for ‘spikeTimes’
gamObj.gampsth: no visible binding for global variable ‘PoissonF’
gammaMLE: multiple local function definitions for ‘rFct’ with different
formal arguments
gssObj.gsspsth: no visible binding for global variable ‘gfit’
gssObj.gsspsth0: no visible binding for global variable ‘gfit’
gsslockedTrain: no visible global function definition for ‘gssanova’
gsslockedTrain0: no visible global function definition for ‘gssanova0’
gsspsth: no visible global function definition for ‘gssanova’
gsspsth0: no visible global function definition for ‘gssanova0’
invgaussMLE: multiple local function definitions for ‘rFct’ with
different formal arguments
lines.CountingProcessSamplePath: no visible binding for global variable
‘st’
mkAR: no visible binding for global variable ‘lN.1’
mkM2U: no visible global function definition for ‘ssden’
mkM2U : <anonymous>: no visible global function definition for ‘dssden’
mkM2U : dFct: no visible global function definition for ‘dssden’
mkPostSimAnalysis: no visible global function definition for
‘findGlobals’
plot.ssanova: no visible global function definition for ‘X11’
plot.ssanova0: no visible global function definition for ‘X11’
qqDuration: no visible binding for global variable ‘yi’
qqDuration: no visible binding for global variable ‘si’
reportHTML.gam: no visible global function definition for ‘png’
reportHTML.gam: no visible global function definition for ‘dev.off’
reportHTML.repeatedTrain: no visible global function definition for
‘png’
reportHTML.repeatedTrain: no visible global function definition for
‘dev.off’
reportHTML.spikeTrain: no visible global function definition for ‘png’
reportHTML.spikeTrain: no visible global function definition for
‘dev.off’
reportHTML.spikeTrain : <anonymous>: no visible global function
definition for ‘png’
reportHTML.spikeTrain : <anonymous>: no visible global function
definition for ‘dev.off’
thinProcess: no visible binding for global variable ‘targetFct’
thinProcess: no visible binding for global variable ‘posMax’
Undefined global functions or variables:
PoissonF X11 dev.off dssden findGlobals gfit gssanova gssanova0 lN.1
png posMax si spikeTimes ssden st targetFct yi
Consider adding
importFrom("grDevices", "X11", "dev.off", "png")
to your NAMESPACE file.
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64