CRAN Package Check Results for Package lmeNBBayes

Last updated on 2022-06-10 15:51:39 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.3.1 10.14 38.76 48.90 NOTE
r-devel-linux-x86_64-debian-gcc 1.3.1 8.21 29.85 38.06 NOTE
r-devel-linux-x86_64-fedora-clang 1.3.1 63.45 NOTE
r-devel-linux-x86_64-fedora-gcc 1.3.1 60.46 NOTE
r-devel-windows-x86_64 1.3.1 38.00 50.00 88.00 NOTE
r-patched-linux-x86_64 1.3.1 8.11 37.01 45.12 NOTE
r-release-linux-x86_64 1.3.1 NOTE
r-release-macos-arm64 1.3.1 19.00 NOTE
r-release-macos-x86_64 1.3.1 25.00 NOTE
r-release-windows-x86_64 1.3.1 16.00 54.00 70.00 NOTE
r-oldrel-macos-arm64 1.3.1 20.00 NOTE
r-oldrel-macos-x86_64 1.3.1 34.00 NOTE
r-oldrel-windows-ix86+x86_64 1.3.1 22.00 37.00 59.00 NOTE

Check Details

Version: 1.3.1
Check: R code for possible problems
Result: NOTE
    E.KN: no visible global function definition for 'integrate'
    F_inv_beta2 : G: no visible global function definition for 'pbeta'
    F_inv_beta2: no visible global function definition for 'uniroot'
    colmeansd: no visible binding for global variable 'sd'
    condProbCI: no visible binding for global variable 'sd'
    condProbCI: no visible binding for global variable 'quantile'
    cov2corNA: no visible global function definition for 'cov2cor'
    denfun.YZ: no visible global function definition for 'dnbinom'
    denfun.YZ: no visible global function definition for 'dnorm'
    denfun.norm: no visible global function definition for 'dnbinom'
    denfun.norm: no visible global function definition for 'dgamma'
    getDIC.FG: no visible global function definition for 'model.matrix'
    getDIC.FG: no visible global function definition for 'model.response'
    getDIC.FG: no visible global function definition for 'model.frame'
    getDIC.FG: no visible global function definition for 'dnbinom'
    getDIC_aGh.rGh.G: no visible global function definition for
     'model.matrix'
    getDIC_aGh.rGh.G: no visible global function definition for
     'model.response'
    getDIC_aGh.rGh.G: no visible global function definition for
     'model.frame'
    getM: no visible global function definition for 'qgamma'
    getS.StatInMed: no visible global function definition for 'rbeta'
    getS.StatInMed: no visible global function definition for 'qbeta'
    getS.StatInMed: no visible global function definition for 'dbeta'
    getS.StatInMed: no visible global function definition for 'rgamma'
    getS.StatInMed: no visible global function definition for 'rnorm'
    getS.StatInMed: no visible global function definition for 'dgamma'
    getS.StatInMed: no visible global function definition for 'dnorm'
    getS.StatInMed: no visible global function definition for 'rnbinom'
    getTrueProb : insideIntBeta: no visible global function definition for
     'integrate'
    getTrueProb : insideIntBeta: no visible binding for global variable
     'dbeta'
    getTrueProb : insideIntBeta: no visible global function definition for
     'dbeta'
    getTrueProb: no visible global function definition for 'integrate'
    getTrueProb : insideIntGam: no visible global function definition for
     'integrate'
    getTrueProb : insideIntGam: no visible binding for global variable
     'dgamma'
    getTrueProb : insideIntGam: no visible global function definition for
     'dgamma'
    index.YZ: no visible global function definition for 'integrate'
    index.batch.Bayes: no visible global function definition for
     'model.matrix'
    index.batch.Bayes: no visible global function definition for
     'model.response'
    index.batch.Bayes: no visible global function definition for
     'model.frame'
    index.gammas: no visible global function definition for 'integrate'
    int.M: no visible global function definition for 'dlnorm'
    intfun: no visible global function definition for 'dlnorm'
    lmeNBBayes: no visible global function definition for 'model.matrix'
    lmeNBBayes: no visible global function definition for 'model.response'
    lmeNBBayes: no visible global function definition for 'model.frame'
    logL.G: no visible global function definition for 'dnbinom'
    mixgamma: no visible global function definition for 'dgamma'
    numfun.YZ: no visible global function definition for 'dnbinom'
    numfun.YZ: no visible global function definition for 'dnorm'
    numfun.norm: no visible global function definition for 'dnbinom'
    numfun.norm: no visible global function definition for 'dgamma'
    piM: no visible global function definition for 'integrate'
    plotGs: no visible global function definition for 'median'
    plotGs: no visible global function definition for 'hist'
    plotGs: no visible global function definition for 'density'
    plotGs: no visible global function definition for 'points'
    plotHistAcf: no visible global function definition for 'median'
    plotHistAcf: no visible global function definition for 'hist'
    plotHistAcf: no visible global function definition for 'quantile'
    plotHistAcf: no visible global function definition for 'points'
    plotHistAcf: no visible global function definition for 'abline'
    plotHistAcf: no visible global function definition for 'acf'
    plotbeta: no visible global function definition for 'dbeta'
    plotbeta: no visible global function definition for 'points'
    plotgamma: no visible global function definition for 'dgamma'
    plotlnorm: no visible global function definition for 'dlnorm'
    plotlnorm: no visible global function definition for 'points'
    plotnbinom: no visible global function definition for 'dnbinom'
    plotnbinom: no visible global function definition for 'points'
    pointsgamma: no visible global function definition for 'dgamma'
    pointsgamma: no visible global function definition for 'points'
    print.LinearMixedEffectNBBayes: no visible binding for global variable
     'sd'
    print.LinearMixedEffectNBBayes: no visible binding for global variable
     'quantile'
    rmvnorm: no visible global function definition for 'rnorm'
    Undefined global functions or variables:
     abline acf cov2cor dbeta density dgamma dlnorm dnbinom dnorm hist
     integrate median model.frame model.matrix model.response pbeta points
     qbeta qgamma quantile rbeta rgamma rnbinom rnorm sd uniroot
    Consider adding
     importFrom("graphics", "abline", "hist", "points")
     importFrom("stats", "acf", "cov2cor", "dbeta", "density", "dgamma",
     "dlnorm", "dnbinom", "dnorm", "integrate", "median",
     "model.frame", "model.matrix", "model.response", "pbeta",
     "qbeta", "qgamma", "quantile", "rbeta", "rgamma", "rnbinom",
     "rnorm", "sd", "uniroot")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.3.1
Check: compiled code
Result: NOTE
    File ‘lmeNBBayes/libs/lmeNBBayes.so’:
     Found no calls to: ‘R_registerRoutines’, ‘R_useDynamicSymbols’
    
    It is good practice to register native routines and to disable symbol
    search.
    
    See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc