Last updated on 2022-06-17 08:51:37 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.99.4 | 74.99 | 252.25 | 327.24 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.99.4 | 72.06 | 184.10 | 256.16 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.99.4 | 437.52 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.99.4 | 439.94 | ERROR | |||
| r-devel-windows-x86_64 | 0.99.4 | 123.00 | 264.00 | 387.00 | ERROR | |
| r-patched-linux-x86_64 | 0.99.4 | ERROR | ||||
| r-release-linux-x86_64 | 0.99.4 | 77.38 | 225.64 | 303.02 | ERROR | |
| r-release-macos-arm64 | 0.99.4 | 130.00 | NOTE | |||
| r-release-macos-x86_64 | 0.99.4 | 212.00 | NOTE | |||
| r-release-windows-x86_64 | 0.99.4 | 127.00 | 262.00 | 389.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.99.4 | 190.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 0.99.4 | 165.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 0.99.4 | 124.00 | 260.00 | 384.00 | ERROR |
Version: 0.99.4
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'NFPdata'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 0.99.4
Check: tests
Result: ERROR
Running 'testthat.R' [14s/17s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(NFP)
Loading required package: graph
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
> test_check('NFP')
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
== Failed tests ================================================================
-- Error (test-NFP.R:13:1): (code run outside of `test_that()`) ----------------
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
Backtrace:
x
1. +-... %>% nodes_standard at test-NFP.R:13:0
2. +-NFP nodes_standard(.)
3. | +-stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
4. | | \-stringi::stri_replace_all_regex(...)
5. | \-graph::nodes(x)
6. +-KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
7. | \-KEGGgraph::parseKGML(file)
8. | \-base::tryCatch(...)
9. | \-base tryCatchList(expr, classes, parentenv, handlers)
10. | \-base tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. | \-value[[3L]](cond)
12. \-base::.handleSimpleError(...)
13. \-base h(simpleError(msg, call))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.99.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [11s/18s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(NFP)
Loading required package: graph
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
> test_check('NFP')
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-NFP.R:13:1): (code run outside of `test_that()`) ────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
Backtrace:
▆
1. ├─... %>% nodes_standard at test-NFP.R:13:0
2. ├─NFP nodes_standard(.)
3. │ ├─stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
4. │ │ └─stringi::stri_replace_all_regex(...)
5. │ └─graph::nodes(x)
6. ├─KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
7. │ └─KEGGgraph::parseKGML(file)
8. │ └─base::tryCatch(...)
9. │ └─base tryCatchList(expr, classes, parentenv, handlers)
10. │ └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. │ └─value[[3L]](cond)
12. └─base::.handleSimpleError(...)
13. └─base h(simpleError(msg, call))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.99.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [19s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(NFP)
Loading required package: graph
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
> test_check('NFP')
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-NFP.R:13:1): (code run outside of `test_that()`) ────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
Backtrace:
▆
1. ├─... %>% nodes_standard at test-NFP.R:13:0
2. ├─NFP nodes_standard(.)
3. │ ├─stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
4. │ │ └─stringi::stri_replace_all_regex(...)
5. │ └─graph::nodes(x)
6. ├─KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
7. │ └─KEGGgraph::parseKGML(file)
8. │ └─base::tryCatch(...)
9. │ └─base tryCatchList(expr, classes, parentenv, handlers)
10. │ └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. │ └─value[[3L]](cond)
12. └─base::.handleSimpleError(...)
13. └─base h(simpleError(msg, call))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.99.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [19s/76s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(NFP)
Loading required package: graph
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
> test_check('NFP')
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-NFP.R:13:1): (code run outside of `test_that()`) ────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
Backtrace:
▆
1. ├─... %>% nodes_standard at test-NFP.R:13:0
2. ├─NFP nodes_standard(.)
3. │ ├─stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
4. │ │ └─stringi::stri_replace_all_regex(...)
5. │ └─graph::nodes(x)
6. ├─KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
7. │ └─KEGGgraph::parseKGML(file)
8. │ └─base::tryCatch(...)
9. │ └─base tryCatchList(expr, classes, parentenv, handlers)
10. │ └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. │ └─value[[3L]](cond)
12. └─base::.handleSimpleError(...)
13. └─base h(simpleError(msg, call))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.99.4
Check: tests
Result: ERROR
Running 'testthat.R' [16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(NFP)
Loading required package: graph
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
> test_check('NFP')
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-NFP.R:13:1): (code run outside of `test_that()`) ────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
Backtrace:
▆
1. ├─... %>% nodes_standard at test-NFP.R:13:0
2. ├─NFP nodes_standard(.)
3. │ ├─stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
4. │ │ └─stringi::stri_replace_all_regex(...)
5. │ └─graph::nodes(x)
6. ├─KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
7. │ └─KEGGgraph::parseKGML(file)
8. │ └─base::tryCatch(...)
9. │ └─base tryCatchList(expr, classes, parentenv, handlers)
10. │ └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. │ └─value[[3L]](cond)
12. └─base::.handleSimpleError(...)
13. └─base h(simpleError(msg, call))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 0.99.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [14s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(NFP)
Loading required package: graph
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
> test_check('NFP')
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-NFP.R:13:1): (code run outside of `test_that()`) ────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
Backtrace:
▆
1. ├─... %>% nodes_standard at test-NFP.R:13:0
2. ├─NFP nodes_standard(.)
3. │ ├─stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
4. │ │ └─stringi::stri_replace_all_regex(...)
5. │ └─graph::nodes(x)
6. ├─KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
7. │ └─KEGGgraph::parseKGML(file)
8. │ └─base::tryCatch(...)
9. │ └─base tryCatchList(expr, classes, parentenv, handlers)
10. │ └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. │ └─value[[3L]](cond)
12. └─base::.handleSimpleError(...)
13. └─base h(simpleError(msg, call))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.99.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [13s/15s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(NFP)
Loading required package: graph
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
> test_check('NFP')
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-NFP.R:13:1): (code run outside of `test_that()`) ────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
Backtrace:
▆
1. ├─... %>% nodes_standard at test-NFP.R:13:0
2. ├─NFP nodes_standard(.)
3. │ ├─stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
4. │ │ └─stringi::stri_replace_all_regex(...)
5. │ └─graph::nodes(x)
6. ├─KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
7. │ └─KEGGgraph::parseKGML(file)
8. │ └─base::tryCatch(...)
9. │ └─base tryCatchList(expr, classes, parentenv, handlers)
10. │ └─base tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. │ └─value[[3L]](cond)
12. └─base::.handleSimpleError(...)
13. └─base h(simpleError(msg, call))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.99.4
Check: tests
Result: ERROR
Running 'testthat.R' [18s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(NFP)
Loading required package: graph
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colnames, dirname, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
tapply, union, unique, unsplit, which.max, which.min
> test_check('NFP')
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
== Failed tests ================================================================
-- Error (test-NFP.R:13:1): (code run outside of `test_that()`) ----------------
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'object' in selecting a method for function 'nodes': missing value where TRUE/FALSE needed
Backtrace:
x
1. +-... %>% nodes_standard at test-NFP.R:13:0
2. +-NFP nodes_standard(.)
3. | +-stringr::str_replace_all(nodes(x), paste0("hsa", ":"), "") at test-NFP.R:7:2
4. | | \-stringi::stri_replace_all_regex(...)
5. | \-graph::nodes(x)
6. +-KEGGgraph::parseKGML2Graph(getKGMLurl("04630", organism = "hsa"))
7. | \-KEGGgraph::parseKGML(file)
8. | \-base::tryCatch(...)
9. | \-base tryCatchList(expr, classes, parentenv, handlers)
10. | \-base tryCatchOne(expr, names, parentenv, handlers[[1L]])
11. | \-value[[3L]](cond)
12. \-base::.handleSimpleError(...)
13. \-base h(simpleError(msg, call))
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 14 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64