Last updated on 2022-06-20 14:51:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.1 | 14.81 | 113.60 | 128.41 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 3.1 | 14.30 | 87.89 | 102.19 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 3.1 | 176.45 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 3.1 | 165.05 | WARN | |||
| r-devel-windows-x86_64 | 3.1 | 31.00 | 132.00 | 163.00 | NOTE | |
| r-patched-linux-x86_64 | 3.1 | 19.09 | 110.46 | 129.55 | NOTE | |
| r-release-linux-x86_64 | 3.1 | 15.38 | 111.39 | 126.77 | NOTE | |
| r-release-macos-arm64 | 3.1 | 55.00 | NOTE | |||
| r-release-macos-x86_64 | 3.1 | 64.00 | NOTE | |||
| r-release-windows-x86_64 | 3.1 | 40.00 | 130.00 | 170.00 | NOTE | |
| r-oldrel-macos-arm64 | 3.1 | 51.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 3.1 | 72.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 3.1 | 35.00 | 137.00 | 172.00 | NOTE |
Version: 3.1
Check: package dependencies
Result: NOTE
Depends: includes the non-default packages:
'partitions', 'VGAM', 'MASS', 'ape', 'apTreeshape', 'geiger',
'gtools'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 3.1
Check: dependencies in R code
Result: NOTE
Packages in Depends field not imported from:
'MASS' 'VGAM' 'apTreeshape' 'ape' 'geiger' 'gtools' 'partitions'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 3.1
Check: R code for possible problems
Result: NOTE
BOTHlabels2: no visible global function definition for 'par'
BOTHlabels2: no visible global function definition for 'strwidth'
BOTHlabels2: no visible global function definition for 'strheight'
BOTHlabels2: no visible global function definition for 'xinch'
BOTHlabels2: no visible global function definition for 'yinch'
BOTHlabels2: no visible global function definition for 'rect'
BOTHlabels2: no visible global function definition for 'symbols'
BOTHlabels2: no visible global function definition for 'rainbow'
BOTHlabels2: no visible global function definition for 'segments'
BOTHlabels2: no visible global function definition for
'floating.pie.asp'
BOTHlabels2: no visible global function definition for 'points'
FP.comp.subs: no visible global function definition for 'na.omit'
FP.comp.subs: no visible global function definition for 'quantile'
PosGroups: no visible global function definition for 'combinations'
Qcomp.subs: no visible global function definition for 'branching.times'
Qcomp.subs: no visible global function definition for 'na.omit'
Qcomp.subs: no visible global function definition for 'pchisq'
RemRedun: no visible global function definition for 'na.exclude'
birthdeath.tree.geiger1.3.1: no visible global function definition for
'runif'
birthdeath.tree.geiger1.3.1: no visible global function definition for
'rexp'
birthdeath.tree.geiger1.3.1: no visible global function definition for
'old2new.phylo'
birthdeath.tree.geiger1.3.1: no visible global function definition for
'read.tree'
birthdeath.tree.geiger1.3.1: no visible global function definition for
'write.tree'
censor.lnorm.x: no visible global function definition for 'optim'
censor.vrat.x: no visible global function definition for 'optim'
censor.weib.x: no visible global function definition for 'optim'
color.tree.plot: no visible global function definition for 'rainbow'
color.tree.plot: no visible global function definition for 'p.adjust'
comBim: no visible global function definition for 'restrictedparts'
comp.subs: no visible global function definition for 'branching.times'
comp.subs: no visible global function definition for 'na.omit'
comp.subs: no visible global function definition for 'pchisq'
comp.subs.DF: no visible global function definition for
'branching.times'
comp.subs.DF: no visible global function definition for 'na.omit'
comp.subs.DF: no visible global function definition for 'pchisq'
compareSubTrees: no visible global function definition for
'branching.times'
drop.tip2.6: no visible global function definition for 'is.rooted'
drop.tip2.6: no visible global function definition for 'locator'
drop.tip2.6: no visible binding for global variable '.PlotPhyloEnv'
drop.tip2.6: no visible global function definition for 'root'
drop.tip2.6: no visible global function definition for 'reorder'
drop.tip2.6: no visible global function definition for
'collapse.singles'
edgelabels2: no visible binding for global variable '.PlotPhyloEnv'
internds: no visible global function definition for 'branching.times'
min.lnorm: no visible global function definition for 'dlnorm'
min.lnorm: no visible global function definition for 'plnorm'
phylogram.plot2: no visible global function definition for 'segments'
plot.phylo2: no visible global function definition for 'par'
plot.phylo2: no visible global function definition for 'reorder'
plot.phylo2: no visible global function definition for 'unrooted.xy'
plot.phylo2: no visible global function definition for 'strwidth'
plot.phylo2: no visible global function definition for 'uniroot'
plot.phylo2: no visible global function definition for 'circular.plot'
plot.phylo2: no visible global function definition for 'cladogram.plot'
plot.phylo2: no visible global function definition for 'segments'
plot.phylo2: no visible global function definition for 'text'
plot.phylo2: no visible global function definition for 'strheight'
plot.phylo2: no visible binding for global variable '.PlotPhyloEnv'
subtrees2.6: no visible global function definition for 'Ntip'
subtrees2.6: no visible global function definition for 'Nnode'
subtrees2.6: no visible global function definition for 'drop.tip'
subtreez: no visible global function definition for 'Ntip'
subtreez: no visible global function definition for 'Nnode'
tree.rand.test: no visible global function definition for
'branching.times'
treeSims: no visible global function definition for 'reorder'
trimTree: no visible global function definition for 'is.ultrametric'
trimTree: no visible global function definition for 'branching.times'
trimTree: no visible global function definition for 'multi2di'
trimTree: no visible global function definition for 'read.tree'
trimTree: no visible global function definition for 'write.tree'
trimTree: no visible global function definition for 'na.omit'
Undefined global functions or variables:
.PlotPhyloEnv Nnode Ntip branching.times circular.plot cladogram.plot
collapse.singles combinations dlnorm drop.tip floating.pie.asp
is.rooted is.ultrametric locator multi2di na.exclude na.omit
old2new.phylo optim p.adjust par pchisq plnorm points quantile
rainbow read.tree rect reorder restrictedparts rexp root runif
segments strheight strwidth symbols text uniroot unrooted.xy
write.tree xinch yinch
Consider adding
importFrom("grDevices", "rainbow")
importFrom("graphics", "locator", "par", "points", "rect", "segments",
"strheight", "strwidth", "symbols", "text", "xinch",
"yinch")
importFrom("stats", "dlnorm", "na.exclude", "na.omit", "optim",
"p.adjust", "pchisq", "plnorm", "quantile", "reorder",
"rexp", "runif", "uniroot")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 3.1
Check: package dependencies
Result: WARN
Depends: includes the non-default packages:
'partitions', 'VGAM', 'MASS', 'ape', 'apTreeshape', 'geiger',
'gtools'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Requires orphaned package: ‘gtools’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc