CRAN Package Check Results for Package iCluster

Last updated on 2022-06-24 13:56:09 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 2.1.0 3.74 55.60 59.34 NOTE
r-devel-linux-x86_64-debian-gcc 2.1.0 4.07 42.97 47.04 NOTE
r-devel-linux-x86_64-fedora-clang 2.1.0 91.43 WARN
r-devel-linux-x86_64-fedora-gcc 2.1.0 83.94 WARN
r-devel-windows-x86_64 2.1.0 25.00 81.00 106.00 NOTE
r-patched-linux-x86_64 2.1.0 5.48 43.00 48.48 NOTE
r-release-linux-x86_64 2.1.0 4.63 43.00 47.63 NOTE
r-release-macos-arm64 2.1.0 24.00 NOTE
r-release-macos-x86_64 2.1.0 31.00 NOTE
r-release-windows-x86_64 2.1.0 20.00 69.00 89.00 NOTE
r-oldrel-macos-arm64 2.1.0 29.00 NOTE
r-oldrel-macos-x86_64 2.1.0 45.00 NOTE
r-oldrel-windows-ix86+x86_64 2.1.0 10.00 59.00 69.00 NOTE

Check Details

Version: 2.1.0
Check: package dependencies
Result: NOTE
    Depends: includes the non-default packages:
     'lattice', 'caTools', 'gdata', 'gtools', 'gplots', 'parallel'
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.1.0
Check: dependencies in R code
Result: NOTE
    Packages in Depends field not imported from:
     'caTools' 'gdata' 'gplots' 'gtools' 'lattice' 'parallel'
     These packages need to be imported from (in the NAMESPACE file)
     for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 2.1.0
Check: R code for possible problems
Result: NOTE
    compute.pod: no visible global function definition for 'model.matrix'
    iCluster: no visible global function definition for 'kmeans'
    iCluster.RI: no visible global function definition for 'median'
    iCluster2: no visible global function definition for 'rnorm'
    iCluster2: no visible global function definition for 'kmeans'
    plotHeatmap: no visible global function definition for 'bluered'
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for 'panel.levelplot'
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for 'panel.abline'
    plotHeatmap: no visible global function definition for 'quantile'
    plotHeatmap: no visible global function definition for 'cor'
    plotHeatmap: no visible global function definition for 'hclust'
    plotHeatmap: no visible global function definition for 'as.dist'
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for 'panel.levelplot'
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for 'panel.abline'
    plotHeatmap : scale.fn: no visible binding for global variable 'sd'
    plotHeatmap: no visible global function definition for 'levelplot'
    plotRI: no visible global function definition for 'axis'
    plotiCluster: no visible global function definition for 'image'
    plotiCluster: no visible global function definition for 'gray'
    plotiCluster: no visible global function definition for 'axis'
    plotiCluster: no visible global function definition for 'mtext'
    plotiCluster: no visible global function definition for 'box'
    predict.kmeans: no visible global function definition for 'dist'
    tune.iCluster2: no visible global function definition for 'data'
    tune.iCluster2: no visible binding for global variable 'glp'
    tune.iCluster2: no visible global function definition for 'mclapply'
    Undefined global functions or variables:
     as.dist axis bluered box cor data dist glp gray hclust image kmeans
     levelplot mclapply median model.matrix mtext panel.abline
     panel.levelplot quantile rnorm sd
    Consider adding
     importFrom("grDevices", "gray")
     importFrom("graphics", "axis", "box", "image", "mtext")
     importFrom("stats", "as.dist", "cor", "dist", "hclust", "kmeans",
     "median", "model.matrix", "quantile", "rnorm", "sd")
     importFrom("utils", "data")
    to your NAMESPACE file.
    
    Found the following calls to data() loading into the global environment:
    File 'iCluster/R/tune.iCluster2.R':
     data(glp)
    See section 'Good practice' in '?data'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 2.1.0
Check: package dependencies
Result: WARN
    Depends: includes the non-default packages:
     'lattice', 'caTools', 'gdata', 'gtools', 'gplots', 'parallel'
    Adding so many packages to the search path is excessive and importing
    selectively is preferable.
    
    Requires orphaned package: ‘gtools’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 2.1.0
Check: R code for possible problems
Result: NOTE
    compute.pod: no visible global function definition for ‘model.matrix’
    iCluster: no visible global function definition for ‘kmeans’
    iCluster.RI: no visible global function definition for ‘median’
    iCluster2: no visible global function definition for ‘rnorm’
    iCluster2: no visible global function definition for ‘kmeans’
    plotHeatmap: no visible global function definition for ‘bluered’
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for ‘panel.levelplot’
    plotHeatmap : my.panel.levelplot: no visible global function definition
     for ‘panel.abline’
    plotHeatmap: no visible global function definition for ‘quantile’
    plotHeatmap: no visible global function definition for ‘cor’
    plotHeatmap: no visible global function definition for ‘hclust’
    plotHeatmap: no visible global function definition for ‘as.dist’
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for ‘panel.levelplot’
    plotHeatmap : my.panel.levelplot.2: no visible global function
     definition for ‘panel.abline’
    plotHeatmap : scale.fn: no visible binding for global variable ‘sd’
    plotHeatmap: no visible global function definition for ‘levelplot’
    plotRI: no visible global function definition for ‘axis’
    plotiCluster: no visible global function definition for ‘image’
    plotiCluster: no visible global function definition for ‘gray’
    plotiCluster: no visible global function definition for ‘axis’
    plotiCluster: no visible global function definition for ‘mtext’
    plotiCluster: no visible global function definition for ‘box’
    predict.kmeans: no visible global function definition for ‘dist’
    tune.iCluster2: no visible global function definition for ‘data’
    tune.iCluster2: no visible binding for global variable ‘glp’
    tune.iCluster2: no visible global function definition for ‘mclapply’
    Undefined global functions or variables:
     as.dist axis bluered box cor data dist glp gray hclust image kmeans
     levelplot mclapply median model.matrix mtext panel.abline
     panel.levelplot quantile rnorm sd
    Consider adding
     importFrom("grDevices", "gray")
     importFrom("graphics", "axis", "box", "image", "mtext")
     importFrom("stats", "as.dist", "cor", "dist", "hclust", "kmeans",
     "median", "model.matrix", "quantile", "rnorm", "sd")
     importFrom("utils", "data")
    to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64