Last updated on 2022-06-24 13:56:09 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.1.0 | 3.74 | 55.60 | 59.34 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.1.0 | 4.07 | 42.97 | 47.04 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 2.1.0 | 91.43 | WARN | |||
| r-devel-linux-x86_64-fedora-gcc | 2.1.0 | 83.94 | WARN | |||
| r-devel-windows-x86_64 | 2.1.0 | 25.00 | 81.00 | 106.00 | NOTE | |
| r-patched-linux-x86_64 | 2.1.0 | 5.48 | 43.00 | 48.48 | NOTE | |
| r-release-linux-x86_64 | 2.1.0 | 4.63 | 43.00 | 47.63 | NOTE | |
| r-release-macos-arm64 | 2.1.0 | 24.00 | NOTE | |||
| r-release-macos-x86_64 | 2.1.0 | 31.00 | NOTE | |||
| r-release-windows-x86_64 | 2.1.0 | 20.00 | 69.00 | 89.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.1.0 | 29.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.1.0 | 45.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 2.1.0 | 10.00 | 59.00 | 69.00 | NOTE |
Version: 2.1.0
Check: package dependencies
Result: NOTE
Depends: includes the non-default packages:
'lattice', 'caTools', 'gdata', 'gtools', 'gplots', 'parallel'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.1.0
Check: dependencies in R code
Result: NOTE
Packages in Depends field not imported from:
'caTools' 'gdata' 'gplots' 'gtools' 'lattice' 'parallel'
These packages need to be imported from (in the NAMESPACE file)
for when this namespace is loaded but not attached.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.1.0
Check: R code for possible problems
Result: NOTE
compute.pod: no visible global function definition for 'model.matrix'
iCluster: no visible global function definition for 'kmeans'
iCluster.RI: no visible global function definition for 'median'
iCluster2: no visible global function definition for 'rnorm'
iCluster2: no visible global function definition for 'kmeans'
plotHeatmap: no visible global function definition for 'bluered'
plotHeatmap : my.panel.levelplot: no visible global function definition
for 'panel.levelplot'
plotHeatmap : my.panel.levelplot: no visible global function definition
for 'panel.abline'
plotHeatmap: no visible global function definition for 'quantile'
plotHeatmap: no visible global function definition for 'cor'
plotHeatmap: no visible global function definition for 'hclust'
plotHeatmap: no visible global function definition for 'as.dist'
plotHeatmap : my.panel.levelplot.2: no visible global function
definition for 'panel.levelplot'
plotHeatmap : my.panel.levelplot.2: no visible global function
definition for 'panel.abline'
plotHeatmap : scale.fn: no visible binding for global variable 'sd'
plotHeatmap: no visible global function definition for 'levelplot'
plotRI: no visible global function definition for 'axis'
plotiCluster: no visible global function definition for 'image'
plotiCluster: no visible global function definition for 'gray'
plotiCluster: no visible global function definition for 'axis'
plotiCluster: no visible global function definition for 'mtext'
plotiCluster: no visible global function definition for 'box'
predict.kmeans: no visible global function definition for 'dist'
tune.iCluster2: no visible global function definition for 'data'
tune.iCluster2: no visible binding for global variable 'glp'
tune.iCluster2: no visible global function definition for 'mclapply'
Undefined global functions or variables:
as.dist axis bluered box cor data dist glp gray hclust image kmeans
levelplot mclapply median model.matrix mtext panel.abline
panel.levelplot quantile rnorm sd
Consider adding
importFrom("grDevices", "gray")
importFrom("graphics", "axis", "box", "image", "mtext")
importFrom("stats", "as.dist", "cor", "dist", "hclust", "kmeans",
"median", "model.matrix", "quantile", "rnorm", "sd")
importFrom("utils", "data")
to your NAMESPACE file.
Found the following calls to data() loading into the global environment:
File 'iCluster/R/tune.iCluster2.R':
data(glp)
See section 'Good practice' in '?data'.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.1.0
Check: package dependencies
Result: WARN
Depends: includes the non-default packages:
'lattice', 'caTools', 'gdata', 'gtools', 'gplots', 'parallel'
Adding so many packages to the search path is excessive and importing
selectively is preferable.
Requires orphaned package: ‘gtools’
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 2.1.0
Check: R code for possible problems
Result: NOTE
compute.pod: no visible global function definition for ‘model.matrix’
iCluster: no visible global function definition for ‘kmeans’
iCluster.RI: no visible global function definition for ‘median’
iCluster2: no visible global function definition for ‘rnorm’
iCluster2: no visible global function definition for ‘kmeans’
plotHeatmap: no visible global function definition for ‘bluered’
plotHeatmap : my.panel.levelplot: no visible global function definition
for ‘panel.levelplot’
plotHeatmap : my.panel.levelplot: no visible global function definition
for ‘panel.abline’
plotHeatmap: no visible global function definition for ‘quantile’
plotHeatmap: no visible global function definition for ‘cor’
plotHeatmap: no visible global function definition for ‘hclust’
plotHeatmap: no visible global function definition for ‘as.dist’
plotHeatmap : my.panel.levelplot.2: no visible global function
definition for ‘panel.levelplot’
plotHeatmap : my.panel.levelplot.2: no visible global function
definition for ‘panel.abline’
plotHeatmap : scale.fn: no visible binding for global variable ‘sd’
plotHeatmap: no visible global function definition for ‘levelplot’
plotRI: no visible global function definition for ‘axis’
plotiCluster: no visible global function definition for ‘image’
plotiCluster: no visible global function definition for ‘gray’
plotiCluster: no visible global function definition for ‘axis’
plotiCluster: no visible global function definition for ‘mtext’
plotiCluster: no visible global function definition for ‘box’
predict.kmeans: no visible global function definition for ‘dist’
tune.iCluster2: no visible global function definition for ‘data’
tune.iCluster2: no visible binding for global variable ‘glp’
tune.iCluster2: no visible global function definition for ‘mclapply’
Undefined global functions or variables:
as.dist axis bluered box cor data dist glp gray hclust image kmeans
levelplot mclapply median model.matrix mtext panel.abline
panel.levelplot quantile rnorm sd
Consider adding
importFrom("grDevices", "gray")
importFrom("graphics", "axis", "box", "image", "mtext")
importFrom("stats", "as.dist", "cor", "dist", "hclust", "kmeans",
"median", "model.matrix", "quantile", "rnorm", "sd")
importFrom("utils", "data")
to your NAMESPACE file.
Flavors: r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64