Last updated on 2022-07-18 07:49:33 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.5.0 | 22.99 | 190.88 | 213.87 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.5.0 | 20.01 | 138.01 | 158.02 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.5.0 | 252.97 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.5.0 | 261.61 | ERROR | |||
| r-devel-windows-x86_64 | 2.5.0 | 146.00 | 200.00 | 346.00 | ERROR | |
| r-patched-linux-x86_64 | 2.5.0 | 24.77 | 173.19 | 197.96 | ERROR | |
| r-release-linux-x86_64 | 2.5.0 | 14.67 | 179.92 | 194.59 | ERROR | |
| r-release-macos-arm64 | 2.5.0 | 81.00 | OK | |||
| r-release-macos-x86_64 | 2.5.0 | 144.00 | OK | |||
| r-release-windows-x86_64 | 2.5.0 | 139.00 | 193.00 | 332.00 | ERROR | |
| r-oldrel-macos-arm64 | 2.5.0 | 101.00 | OK | |||
| r-oldrel-macos-x86_64 | 2.5.0 | 172.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 2.5.0 | 48.00 | 192.00 | 240.00 | ERROR |
Version: 2.5.0
Check: examples
Result: ERROR
Running examples in 'healthcareai-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: evaluate
> ### Title: Get model performance metrics
> ### Aliases: evaluate evaluate.predicted_df evaluate.model_list
>
> ### ** Examples
>
> models <- machine_learn(pima_diabetes[1:40, ],
+ patient_id,
+ outcome = diabetes,
+ models = c("XGB", "RF"),
+ tune = FALSE,
+ n_folds = 3)
Training new data prep recipe...
Error: `step_meanimpute()` was deprecated in recipes 0.1.16 and is now defunct.
Please use `step_impute_mean()` instead.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 2.5.0
Check: tests
Result: ERROR
Running 'testthat-1.R' [0s/1s]
Running 'testthat-2.R' [0s/1s]
Running 'testthat-3.R' [0s/1s]
Running 'testthat-4.R' [0s/1s]
Running 'testthat-5.R' [7s/9s]
Running the tests in 'tests/testthat-5.R' failed.
Complete output:
> if (!identical(Sys.getenv("NOT_CRAN"), "true")) {
+ library(testthat)
+ library(healthcareai)
+ Sys.setenv("R_TESTS" = "")
+ test_check("healthcareai", filter = "cran_only")
+ }
healthcareai version 2.5.0
Please visit https://docs.healthcare.ai for full documentation and vignettes. Join the community at https://healthcare-ai.slack.com
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
== Failed tests ================================================================
-- Error (test-cran_only.R:4:3): the fundamentals work -------------------------
<lifecycle_error_deprecated/defunctError/error/condition/condition>
Error: `step_meanimpute()` was deprecated in recipes 0.1.16 and is now defunct.
Please use `step_impute_mean()` instead.
Backtrace:
x
1. +-healthcareai::machine_learn(...) at test-cran_only.R:4:2
2. | \-healthcareai::prep_data(d, !!!dots, outcome = !!outcome, impute = impute)
3. | \-recipe %>% hcai_impute()
4. \-healthcareai::hcai_impute(.)
5. \-recipes::step_meanimpute(recipe, all_numeric(), -all_outcomes())
6. \-lifecycle::deprecate_stop(...)
7. \-lifecycle:::deprecate_stop0(msg)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.5.0
Check: tests
Result: ERROR
Running ‘testthat-1.R’ [0s/1s]
Running ‘testthat-2.R’ [0s/1s]
Running ‘testthat-3.R’ [0s/1s]
Running ‘testthat-4.R’ [0s/1s]
Running ‘testthat-5.R’ [5s/9s]
Running the tests in ‘tests/testthat-5.R’ failed.
Complete output:
> if (!identical(Sys.getenv("NOT_CRAN"), "true")) {
+ library(testthat)
+ library(healthcareai)
+ Sys.setenv("R_TESTS" = "")
+ test_check("healthcareai", filter = "cran_only")
+ }
healthcareai version 2.5.0
Please visit https://docs.healthcare.ai for full documentation and vignettes. Join the community at https://healthcare-ai.slack.com
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-cran_only.R:4:3): the fundamentals work ─────────────────────────
<lifecycle_error_deprecated/defunctError/error/condition/condition>
Error: `step_meanimpute()` was deprecated in recipes 0.1.16 and is now defunct.
Please use `step_impute_mean()` instead.
Backtrace:
▆
1. ├─healthcareai::machine_learn(...) at test-cran_only.R:4:2
2. │ └─healthcareai::prep_data(d, !!!dots, outcome = !!outcome, impute = impute)
3. │ └─recipe %>% hcai_impute()
4. └─healthcareai::hcai_impute(.)
5. └─recipes::step_meanimpute(recipe, all_numeric(), -all_outcomes())
6. └─lifecycle::deprecate_stop(...)
7. └─lifecycle:::deprecate_stop0(msg)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.5.0
Check: examples
Result: ERROR
Running examples in ‘healthcareai-Ex.R’ failed
The error most likely occurred in:
> ### Name: evaluate
> ### Title: Get model performance metrics
> ### Aliases: evaluate evaluate.predicted_df evaluate.model_list
>
> ### ** Examples
>
> models <- machine_learn(pima_diabetes[1:40, ],
+ patient_id,
+ outcome = diabetes,
+ models = c("XGB", "RF"),
+ tune = FALSE,
+ n_folds = 3)
Training new data prep recipe...
Error: `step_meanimpute()` was deprecated in recipes 0.1.16 and is now defunct.
Please use `step_impute_mean()` instead.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.5.0
Check: tests
Result: ERROR
Running ‘testthat-1.R’
Running ‘testthat-2.R’
Running ‘testthat-3.R’
Running ‘testthat-4.R’
Running ‘testthat-5.R’ [8s/10s]
Running the tests in ‘tests/testthat-5.R’ failed.
Complete output:
> if (!identical(Sys.getenv("NOT_CRAN"), "true")) {
+ library(testthat)
+ library(healthcareai)
+ Sys.setenv("R_TESTS" = "")
+ test_check("healthcareai", filter = "cran_only")
+ }
healthcareai version 2.5.0
Please visit https://docs.healthcare.ai for full documentation and vignettes. Join the community at https://healthcare-ai.slack.com
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-cran_only.R:4:3): the fundamentals work ─────────────────────────
<lifecycle_error_deprecated/defunctError/error/condition/condition>
Error: `step_meanimpute()` was deprecated in recipes 0.1.16 and is now defunct.
Please use `step_impute_mean()` instead.
Backtrace:
▆
1. ├─healthcareai::machine_learn(...) at test-cran_only.R:4:2
2. │ └─healthcareai::prep_data(d, !!!dots, outcome = !!outcome, impute = impute)
3. │ └─recipe %>% hcai_impute()
4. └─healthcareai::hcai_impute(.)
5. └─recipes::step_meanimpute(recipe, all_numeric(), -all_outcomes())
6. └─lifecycle::deprecate_stop(...)
7. └─lifecycle:::deprecate_stop0(msg)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.5.0
Check: tests
Result: ERROR
Running ‘testthat-1.R’
Running ‘testthat-2.R’
Running ‘testthat-3.R’
Running ‘testthat-4.R’
Running ‘testthat-5.R’ [8s/12s]
Running the tests in ‘tests/testthat-5.R’ failed.
Complete output:
> if (!identical(Sys.getenv("NOT_CRAN"), "true")) {
+ library(testthat)
+ library(healthcareai)
+ Sys.setenv("R_TESTS" = "")
+ test_check("healthcareai", filter = "cran_only")
+ }
healthcareai version 2.5.0
Please visit https://docs.healthcare.ai for full documentation and vignettes. Join the community at https://healthcare-ai.slack.com
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-cran_only.R:4:3): the fundamentals work ─────────────────────────
<lifecycle_error_deprecated/defunctError/error/condition/condition>
Error: `step_meanimpute()` was deprecated in recipes 0.1.16 and is now defunct.
Please use `step_impute_mean()` instead.
Backtrace:
▆
1. ├─healthcareai::machine_learn(...) at test-cran_only.R:4:2
2. │ └─healthcareai::prep_data(d, !!!dots, outcome = !!outcome, impute = impute)
3. │ └─recipe %>% hcai_impute()
4. └─healthcareai::hcai_impute(.)
5. └─recipes::step_meanimpute(recipe, all_numeric(), -all_outcomes())
6. └─lifecycle::deprecate_stop(...)
7. └─lifecycle:::deprecate_stop0(msg)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.5.0
Check: tests
Result: ERROR
Running 'testthat-1.R' [0s]
Running 'testthat-2.R' [0s]
Running 'testthat-3.R' [0s]
Running 'testthat-4.R' [0s]
Running 'testthat-5.R' [7s]
Running the tests in 'tests/testthat-5.R' failed.
Complete output:
> if (!identical(Sys.getenv("NOT_CRAN"), "true")) {
+ library(testthat)
+ library(healthcareai)
+ Sys.setenv("R_TESTS" = "")
+ test_check("healthcareai", filter = "cran_only")
+ }
healthcareai version 2.5.0
Please visit https://docs.healthcare.ai for full documentation and vignettes. Join the community at https://healthcare-ai.slack.com
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-cran_only.R:4:3): the fundamentals work ─────────────────────────
<lifecycle_error_deprecated/defunctError/error/condition/condition>
Error: `step_meanimpute()` was deprecated in recipes 0.1.16 and is now defunct.
Please use `step_impute_mean()` instead.
Backtrace:
▆
1. ├─healthcareai::machine_learn(...) at test-cran_only.R:4:2
2. │ └─healthcareai::prep_data(d, !!!dots, outcome = !!outcome, impute = impute)
3. │ └─recipe %>% hcai_impute()
4. └─healthcareai::hcai_impute(.)
5. └─recipes::step_meanimpute(recipe, all_numeric(), -all_outcomes())
6. └─lifecycle::deprecate_stop(...)
7. └─lifecycle:::deprecate_stop0(msg)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64
Version: 2.5.0
Check: tests
Result: ERROR
Running ‘testthat-1.R’ [0s/1s]
Running ‘testthat-2.R’ [0s/1s]
Running ‘testthat-3.R’ [0s/1s]
Running ‘testthat-4.R’ [0s/1s]
Running ‘testthat-5.R’ [7s/8s]
Running the tests in ‘tests/testthat-5.R’ failed.
Complete output:
> if (!identical(Sys.getenv("NOT_CRAN"), "true")) {
+ library(testthat)
+ library(healthcareai)
+ Sys.setenv("R_TESTS" = "")
+ test_check("healthcareai", filter = "cran_only")
+ }
healthcareai version 2.5.0
Please visit https://docs.healthcare.ai for full documentation and vignettes. Join the community at https://healthcare-ai.slack.com
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-cran_only.R:4:3): the fundamentals work ─────────────────────────
<lifecycle_error_deprecated/defunctError/error/condition/condition>
Error: `step_meanimpute()` was deprecated in recipes 0.1.16 and is now defunct.
Please use `step_impute_mean()` instead.
Backtrace:
▆
1. ├─healthcareai::machine_learn(...) at test-cran_only.R:4:2
2. │ └─healthcareai::prep_data(d, !!!dots, outcome = !!outcome, impute = impute)
3. │ └─recipe %>% hcai_impute()
4. └─healthcareai::hcai_impute(.)
5. └─recipes::step_meanimpute(recipe, all_numeric(), -all_outcomes())
6. └─lifecycle::deprecate_stop(...)
7. └─lifecycle:::deprecate_stop0(msg)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 2.5.0
Check: tests
Result: ERROR
Running ‘testthat-1.R’ [0s/1s]
Running ‘testthat-2.R’ [0s/1s]
Running ‘testthat-3.R’ [0s/1s]
Running ‘testthat-4.R’ [0s/1s]
Running ‘testthat-5.R’ [6s/8s]
Running the tests in ‘tests/testthat-5.R’ failed.
Complete output:
> if (!identical(Sys.getenv("NOT_CRAN"), "true")) {
+ library(testthat)
+ library(healthcareai)
+ Sys.setenv("R_TESTS" = "")
+ test_check("healthcareai", filter = "cran_only")
+ }
healthcareai version 2.5.0
Please visit https://docs.healthcare.ai for full documentation and vignettes. Join the community at https://healthcare-ai.slack.com
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error (test-cran_only.R:4:3): the fundamentals work ─────────────────────────
<lifecycle_error_deprecated/defunctError/error/condition/condition>
Error: `step_meanimpute()` was deprecated in recipes 0.1.16 and is now defunct.
Please use `step_impute_mean()` instead.
Backtrace:
▆
1. ├─healthcareai::machine_learn(...) at test-cran_only.R:4:2
2. │ └─healthcareai::prep_data(d, !!!dots, outcome = !!outcome, impute = impute)
3. │ └─recipe %>% hcai_impute()
4. └─healthcareai::hcai_impute(.)
5. └─recipes::step_meanimpute(recipe, all_numeric(), -all_outcomes())
6. └─lifecycle::deprecate_stop(...)
7. └─lifecycle:::deprecate_stop0(msg)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 2.5.0
Check: tests
Result: ERROR
Running 'testthat-1.R' [0s]
Running 'testthat-2.R' [0s]
Running 'testthat-3.R' [0s]
Running 'testthat-4.R' [0s]
Running 'testthat-5.R' [8s]
Running the tests in 'tests/testthat-5.R' failed.
Complete output:
> if (!identical(Sys.getenv("NOT_CRAN"), "true")) {
+ library(testthat)
+ library(healthcareai)
+ Sys.setenv("R_TESTS" = "")
+ test_check("healthcareai", filter = "cran_only")
+ }
healthcareai version 2.5.0
Please visit https://docs.healthcare.ai for full documentation and vignettes. Join the community at https://healthcare-ai.slack.com
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
== Failed tests ================================================================
-- Error (test-cran_only.R:4:3): the fundamentals work -------------------------
<lifecycle_error_deprecated/defunctError/error/condition/condition>
Error: `step_meanimpute()` was deprecated in recipes 0.1.16 and is now defunct.
Please use `step_impute_mean()` instead.
Backtrace:
x
1. +-healthcareai::machine_learn(...) at test-cran_only.R:4:2
2. | \-healthcareai::prep_data(d, !!!dots, outcome = !!outcome, impute = impute)
3. | \-recipe %>% hcai_impute()
4. \-healthcareai::hcai_impute(.)
5. \-recipes::step_meanimpute(recipe, all_numeric(), -all_outcomes())
6. \-lifecycle::deprecate_stop(...)
7. \-lifecycle:::deprecate_stop0(msg)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64