CRAN Package Check Results for Package xQTLbiolinks

Last updated on 2022-08-09 08:52:09 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.1.1 37.44 339.27 376.71 NOTE
r-devel-linux-x86_64-debian-gcc 1.1.1 31.11 245.02 276.13 NOTE
r-devel-linux-x86_64-fedora-clang 1.1.1 474.86 NOTE
r-devel-linux-x86_64-fedora-gcc 1.1.1 452.38 NOTE
r-devel-windows-x86_64 1.1.1 151.00 334.00 485.00 ERROR
r-patched-linux-x86_64 1.1.1 40.63 322.43 363.06 NOTE
r-release-linux-x86_64 1.1.1 NOTE
r-release-macos-arm64 1.1.1 167.00 NOTE
r-release-macos-x86_64 1.1.1 231.00 NOTE
r-release-windows-x86_64 1.1.1 96.00 377.00 473.00 NOTE
r-oldrel-macos-arm64 1.1.1 165.00 NOTE
r-oldrel-macos-x86_64 1.1.1 222.00 NOTE
r-oldrel-windows-ix86+x86_64 1.1.1 77.00 349.00 426.00 NOTE

Additional issues

donttest

Check Details

Version: 1.1.1
Check: package dependencies
Result: NOTE
    Package suggested but not available for checking: 'hyprcoloc'
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 1.1.1
Check: examples
Result: ERROR
    Running examples in 'xQTLbiolinks-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: xQTLvisual_sqtlExp
    > ### Title: Boxplot of normalized expression among genotypes for sQTL.
    > ### Aliases: xQTLvisual_sqtlExp
    >
    > ### ** Examples
    >
    > expSqtl <-xQTLvisual_sqtlExp(variantName="chr11_66561248_T_C_b38",
    + phenotypeId ="chr11:66348070:66353455:clu_8500:ENSG00000255468.6",
    + tissueSiteDetail="Skin - Sun Exposed (Lower leg)")
    Querying variant... | 2022-Aug-08 14:17:00
    == Querying expression from API server:
     Normalized expression of [605] samples were obtaioned in Skin - Sun Exposed (Lower leg) in gtex_v8.
    == Done
    Error in xQTLvisual_sqtlExp(variantName = "chr11_66561248_T_C_b38", phenotypeId = "chr11:66348070:66353455:clu_8500:ENSG00000255468.6", :
     object 'sqtlInfo' not found
    Execution halted
Flavor: r-devel-windows-x86_64