Last updated on 2022-09-04 11:15:07 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0-12 | 66.58 | 665.76 | 732.34 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 2.0-12 | 54.63 | 554.50 | 609.13 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0-12 | 726.37 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0-12 | 1027.00 | NOTE | |||
| r-devel-windows-x86_64 | 2.0-12 | 95.00 | 724.00 | 819.00 | NOTE | |
| r-patched-linux-x86_64 | 2.0-12 | 61.37 | 694.26 | 755.63 | OK | |
| r-release-linux-x86_64 | 2.0-12 | OK | ||||
| r-release-macos-arm64 | 2.0-12 | 175.00 | NOTE | |||
| r-release-macos-x86_64 | 2.0-12 | 339.00 | NOTE | |||
| r-release-windows-x86_64 | 2.0-12 | 104.00 | 730.00 | 834.00 | NOTE | |
| r-oldrel-macos-arm64 | 2.0-12 | 176.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 2.0-12 | 329.00 | NOTE | |||
| r-oldrel-windows-ix86+x86_64 | 2.0-12 | 141.00 | 734.00 | 875.00 | NOTE |
Version: 2.0-12
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building 'SNPassoc.Rmd' using rmarkdown
Registered S3 method overwritten by 'SNPassoc':
method from
summary.haplo.glm haplo.stats
Warning in par(old.mfrow) :
argument 1 does not name a graphical parameter
Warning in par(old.mfrow) :
argument 1 does not name a graphical parameter
Warning in `[.data.frame`(x, colSNPs, drop = FALSE) :
'drop' argument will be ignored
Warning in par(old.las) :
argument 1 does not name a graphical parameter
*** caught segfault ***
address 0x18, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x18, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
Warning in mclapply(data[, colSNPs, drop = FALSE], snp, sep = sep, ...) :
scheduled cores 1, 2 did not deliver results, all values of the jobs will be affected
Quitting from lines 142-145 (SNPassoc.Rmd)
Error: processing vignette 'SNPassoc.Rmd' failed with diagnostics:
arguments imply differing number of rows: 1578, 0
--- failed re-building 'SNPassoc.Rmd'
SUMMARY: processing the following file failed:
'SNPassoc.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 2.0-12
Check: dependencies in R code
Result: NOTE
Namespace in Imports field not imported from: ‘BiocStyle’
All declared Imports should be used.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.0-12
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘SNPassoc.Rmd’ using rmarkdown
Registered S3 method overwritten by 'SNPassoc':
method from
summary.haplo.glm haplo.stats
Warning in par(old.mfrow) :
argument 1 does not name a graphical parameter
OMP: Warning #96: Cannot form a team with 15 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Warning in par(old.mfrow) :
argument 1 does not name a graphical parameter
Warning in `[.data.frame`(x, colSNPs, drop = FALSE) :
'drop' argument will be ignored
Warning in par(old.las) :
argument 1 does not name a graphical parameter
*** caught segfault ***
address 0x18, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
*** caught segfault ***
address 0x18, cause 'memory not mapped'
An irrecoverable exception occurred. R is aborting now ...
Warning in mclapply(data[, colSNPs, drop = FALSE], snp, sep = sep, ...) :
scheduled cores 1, 2 did not deliver results, all values of the jobs will be affected
Quitting from lines 142-145 (SNPassoc.Rmd)
Error: processing vignette 'SNPassoc.Rmd' failed with diagnostics:
arguments imply differing number of rows: 1578, 0
--- failed re-building ‘SNPassoc.Rmd’
SUMMARY: processing the following file failed:
‘SNPassoc.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 2.0-12
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: 'MafDb.1Kgenomes.phase3.GRCh38'
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64, r-oldrel-windows-ix86+x86_64
Version: 2.0-12
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'SNPlocs.Hsapiens.dbSNP144.GRCh38', 'MafDb.1Kgenomes.phase3.GRCh38',
'BSgenome.Hsapiens.NCBI.GRCh38', 'GenomicScores'
Flavor: r-release-macos-arm64
Version: 2.0-12
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'SNPlocs.Hsapiens.dbSNP144.GRCh38', 'MafDb.1Kgenomes.phase3.GRCh38',
'BSgenome.Hsapiens.NCBI.GRCh38'
Flavor: r-release-macos-x86_64
Version: 2.0-12
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'SNPlocs.Hsapiens.dbSNP144.GRCh38', 'MafDb.1Kgenomes.phase3.GRCh38'
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64