CRAN Package Check Results for Package iCiteR

Last updated on 2022-10-07 20:52:23 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	0.2.1	2.17	29.73	31.90	NOTE
r-devel-linux-x86_64-debian-gcc	0.2.1	1.89	0.02	1.91	FAIL
r-devel-linux-x86_64-fedora-clang	0.2.1			53.57	NOTE
r-devel-linux-x86_64-fedora-gcc	0.2.1				ERROR
r-devel-windows-x86_64	0.2.1	8.00	80.00	88.00	NOTE
r-patched-linux-x86_64	0.2.1	2.61	29.95	32.56	NOTE
r-release-linux-x86_64	0.2.1	2.36	30.13	32.49	NOTE
r-release-macos-arm64	0.2.1			29.00	NOTE
r-release-macos-x86_64	0.2.1			34.00	NOTE
r-release-windows-x86_64	0.2.1	9.00	0.00	9.00	FAIL
r-oldrel-macos-arm64	0.2.1			40.00	NOTE
r-oldrel-macos-x86_64	0.2.1			1803.00	NOTE
r-oldrel-windows-ix86+x86_64	0.2.1	5.00	75.00	80.00	NOTE

Check Details

Version: 0.2.1
Check: LazyData
Result: NOTE
     'LazyData' is specified without a 'data' directory
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-ix86+x86_64

Version: 0.2.1
Check: examples
Result: ERROR
    Running examples in ‘iCiteR-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: icite_api
    > ### Title: Query the iCite api
    > ### Aliases: icite_api
    >
    > ### ** Examples
    >
    > dat <- icite_api('27599104')
    Error in curl::curl_fetch_memory(url, handle = handle) :
     server certificate verification failed. CAfile: none CRLfile: none
    Calls: icite_api ... request_fetch -> request_fetch.write_memory -> <Anonymous>
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.1
Check: tests
Result: FAIL
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.2.1
Check: examples
Result: ERROR
    Running examples in ‘iCiteR-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: icite_api
    > ### Title: Query the iCite api
    > ### Aliases: icite_api
    >
    > ### ** Examples
    >
    > dat <- icite_api('27599104')
    Error in curl::curl_fetch_memory(url, handle = handle) :
     SSL certificate problem: certificate has expired
    Calls: icite_api ... request_fetch -> request_fetch.write_memory -> <Anonymous>
    Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.2.1
Check: tests
Result: ERROR
     Running ‘testthat.R’ [2m/33m]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(iCiteR)
     >
     > test_check("iCiteR")
     [1] "api/pubs?year=2012&limit=50&format=csv"
    
     |
     | | 0%[1] "api/pubs?year=2012&limit=1000&format=csv"
    
     |
     |======================================================================| 100%[1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
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     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
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     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
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     [1] "api/pubs?year=2012&limit=1000&format=csv"
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     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [1] "api/pubs?year=2012&limit=1000&format=csv"
     [ FAIL 3 | WARN 0 | SKIP 0 | PASS 8 ]
    
     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Failure (test-get-metrics.R:19:3): get_metrics can handle multiple ids ──────
     sum(is.na(out1$relative_citation_ratio)) not equal to 0.
     1/1 mismatches
     [1] 3 - 0 == 3
     ── Error (test-other_fns.R:4:3): Prints correct details of S3 object ───────────
     Error in `curl::curl_fetch_memory(url, handle = handle)`: SSL certificate problem: certificate has expired
     Backtrace:
     ▆
     1. └─iCiteR::icite_api(pmids = "1000") at test-other_fns.R:4:2
     2. └─httr::GET(url)
     3. └─httr:::request_perform(req, hu$handle$handle)
     4. ├─httr:::request_fetch(req$output, req$url, handle)
     5. └─httr:::request_fetch.write_memory(req$output, req$url, handle)
     6. └─curl::curl_fetch_memory(url, handle = handle)
     ── Failure (test-search-metrics.R:5:3): api call produces dataframe ────────────
     `out1` inherits from `'character'` not `'character'`.
    
     [ FAIL 3 | WARN 0 | SKIP 0 | PASS 8 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 0.2.1
Check: examples
Result: ERROR
    Running examples in 'iCiteR-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: icite_api
    > ### Title: Query the iCite api
    > ### Aliases: icite_api
    >
    > ### ** Examples
    >
    > dat <- icite_api('27599104')
    Error in curl::curl_fetch_memory(url, handle = handle) :
     schannel: next InitializeSecurityContext failed: SEC_E_CERT_EXPIRED (0x80090328) - Das empfangene Zertifikat ist abgelaufen.
    Calls: icite_api ... request_fetch -> request_fetch.write_memory -> <Anonymous>
    Execution halted
Flavor: r-release-windows-x86_64

Version: 0.2.1
Check: tests
Result: FAIL
    Check process probably crashed or hung up for 20 minutes ... killed
    Most likely this happened in the example checks (?),
    if not, ignore the following last lines of example output:
     pmid year title authors journal is_research_article
    1 27599104 NA NA NA NA NA
     relative_citation_ratio nih_percentile human animal molecular_cellular apt
    1 NA NA NA NA NA NA
     is_clinical citation_count citations_per_year expected_citations_per_year
    1 NA NA NA NA
     field_citation_rate provisional x_coord y_coord cited_by_clin cited_by
    1 NA NA NA NA NA NA
     references doi
    1 NA NA
    >
    >
    >
    > cleanEx()
    > nameEx("icite_api")
    > ### * icite_api
    >
    > flush(stderr()); flush(stdout())
    >
    > ### Name: icite_api
    > ### Title: Query the iCite api
    > ### Aliases: icite_api
    >
    > ### ** Examples
    >
    > dat <- icite_api('27599104')
    Error in curl::curl_fetch_memory(url, handle = handle) :
     schannel: next InitializeSecurityContext failed: SEC_E_CERT_EXPIRED (0x80090328) - Das empfangene Zertifikat ist abgelaufen.
    Calls: icite_api ... request_fetch -> request_fetch.write_memory -> <Anonymous>
    Execution halted
    ======== End of example output (where/before crash/hang up occured ?) ========
Flavor: r-release-windows-x86_64