Last updated on 2022-10-15 08:00:25 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.1 | 7.17 | 82.01 | 89.18 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.1 | 5.93 | 64.66 | 70.59 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.1 | 119.54 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.2.1 | 117.83 | ERROR | |||
| r-devel-windows-x86_64 | 0.2.1 | 37.00 | 124.00 | 161.00 | ERROR | |
| r-patched-linux-x86_64 | 0.2.1 | 6.83 | 79.10 | 85.93 | ERROR | |
| r-release-linux-x86_64 | 0.2.1 | 5.61 | 78.37 | 83.98 | ERROR | |
| r-release-macos-arm64 | 0.2.1 | 45.00 | OK | |||
| r-release-macos-x86_64 | 0.2.1 | 76.00 | OK | |||
| r-release-windows-x86_64 | 0.2.1 | 40.00 | 121.00 | 161.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.2.1 | 44.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.2.1 | 68.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 0.2.1 | 13.00 | 120.00 | 133.00 | ERROR |
Version: 0.2.1
Check: examples
Result: ERROR
Running examples in 'tidyndr-Ex.R' failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hts_recent
> ### Title: Subset Clients who had Recent Infection Test Done during a
> ### period of Interest
> ### Aliases: hts_recent
>
> ### ** Examples
>
> ### Line-list of clients offered recency testing
> hts_recent_clients <- hts_recent(recency_example, from = "2021-07-01", to = "2021-10-31")
>
> hts_pos <- hts_tst_pos(recency_example) # identifies all hts_positive clients
> # line-list positive clients offered recency testing in 'Okun' state
> hts_recent(hts_pos, state = "Okun")
Error in `validate_recent()`:
! state(s) is/are not contained in the supplied data. Check the spelling and/or case.
Backtrace:
x
1. \-tidyndr::hts_recent(hts_pos, state = "Okun")
2. \-tidyndr:::validate_recent(data, from, to, states, facilities)
3. \-rlang::abort("state(s) is/are not contained in the supplied data. Check the spelling and/or case.")
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.1
Check: tests
Result: ERROR
Running 'spelling.R' [0s/0s]
Running 'testthat.R' [14s/20s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(tidyndr)
Attaching package: 'tidyndr'
A package for analysis of the front-end patient-level data from the Nigeria National Data Repository.
>
> test_check("tidyndr")
`curl` package not installed, falling back to using `url()`
Three new variables created:
[1] `date_lost`
[2] `appointment_date
[2] `current_status
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
== Failed tests ================================================================
-- Failure ('test-cot_cascade.R:2'): cot_cascade works fine --------------------
cot_cascade(ndr_example, quarter = 1) (`actual`) not identical to {
...
} (`expected`).
actual vs expected
tx_new tx_ml tx_ml_dead tx_ml_to tx_ml_iit iit_rate
- actual[1, ] 0 0 0 0 0 0.000
+ expected[1, ] 39 60 2 2 56 8.272
- actual[2, ] 0 0 0 0 0 0.000
+ expected[2, ] 230 302 21 22 259 7.813
- actual[3, ] 0 0 0 0 0 0.000
+ expected[3, ] 283 373 18 20 335 7.793
- actual[4, ] 0 0 0 0 0 0.000
+ expected[4, ] 191 240 18 17 205 7.113
- actual[5, ] 0 0 0 0 0 0.000
+ expected[5, ] 743 975 59 61 855 7.652
`actual$tx_new`: 0 0 0 0 0
`expected$tx_new`: 39 230 283 191 743
`actual$tx_ml`: 0 0 0 0 0
`expected$tx_ml`: 60 302 373 240 975
`actual$tx_ml_dead`: 0 0 0 0 0
`expected$tx_ml_dead`: 2 21 18 18 59
`actual$tx_ml_to`: 0 0 0 0 0
`expected$tx_ml_to`: 2 22 20 17 61
`actual$tx_ml_iit`: 0 0 0 0 0
`expected$tx_ml_iit`: 56 259 335 205 855
`actual$iit_rate`: 0 0 0 0 0
`expected$iit_rate`: 8 8 8 7 8
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.1
Check: examples
Result: ERROR
Running examples in ‘tidyndr-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: hts_recent
> ### Title: Subset Clients who had Recent Infection Test Done during a
> ### period of Interest
> ### Aliases: hts_recent
>
> ### ** Examples
>
> ### Line-list of clients offered recency testing
> hts_recent_clients <- hts_recent(recency_example, from = "2021-07-01", to = "2021-10-31")
>
> hts_pos <- hts_tst_pos(recency_example) # identifies all hts_positive clients
> # line-list positive clients offered recency testing in 'Okun' state
> hts_recent(hts_pos, state = "Okun")
Error in `validate_recent()`:
! state(s) is/are not contained in the supplied data. Check the spelling and/or case.
Backtrace:
▆
1. └─tidyndr::hts_recent(hts_pos, state = "Okun")
2. └─tidyndr:::validate_recent(data, from, to, states, facilities)
3. └─rlang::abort("state(s) is/are not contained in the supplied data. Check the spelling and/or case.")
Execution halted
Flavors: r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/1s]
Running ‘testthat.R’ [11s/23s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidyndr)
Attaching package: 'tidyndr'
A package for analysis of the front-end patient-level data from the Nigeria National Data Repository.
>
> test_check("tidyndr")
`curl` package not installed, falling back to using `url()`
Three new variables created:
[1] `date_lost`
[2] `appointment_date
[2] `current_status
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-cot_cascade.R:2'): cot_cascade works fine ────────────────────
cot_cascade(ndr_example, quarter = 1) (`actual`) not identical to {
...
} (`expected`).
actual vs expected
tx_new tx_ml tx_ml_dead tx_ml_to tx_ml_iit iit_rate
- actual[1, ] 0 0 0 0 0 0.000
+ expected[1, ] 39 60 2 2 56 8.272
- actual[2, ] 0 0 0 0 0 0.000
+ expected[2, ] 230 302 21 22 259 7.813
- actual[3, ] 0 0 0 0 0 0.000
+ expected[3, ] 283 373 18 20 335 7.793
- actual[4, ] 0 0 0 0 0 0.000
+ expected[4, ] 191 240 18 17 205 7.113
- actual[5, ] 0 0 0 0 0 0.000
+ expected[5, ] 743 975 59 61 855 7.652
`actual$tx_new`: 0 0 0 0 0
`expected$tx_new`: 39 230 283 191 743
`actual$tx_ml`: 0 0 0 0 0
`expected$tx_ml`: 60 302 373 240 975
`actual$tx_ml_dead`: 0 0 0 0 0
`expected$tx_ml_dead`: 2 21 18 18 59
`actual$tx_ml_to`: 0 0 0 0 0
`expected$tx_ml_to`: 2 22 20 17 61
`actual$tx_ml_iit`: 0 0 0 0 0
`expected$tx_ml_iit`: 56 259 335 205 855
`actual$iit_rate`: 0 0 0 0 0
`expected$iit_rate`: 8 8 8 7 8
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.1
Check: examples
Result: ERROR
Running examples in ‘tidyndr-Ex.R’ failed
The error most likely occurred in:
> ### Name: hts_recent
> ### Title: Subset Clients who had Recent Infection Test Done during a
> ### period of Interest
> ### Aliases: hts_recent
>
> ### ** Examples
>
> ### Line-list of clients offered recency testing
> hts_recent_clients <- hts_recent(recency_example, from = "2021-07-01", to = "2021-10-31")
>
> hts_pos <- hts_tst_pos(recency_example) # identifies all hts_positive clients
> # line-list positive clients offered recency testing in 'Okun' state
> hts_recent(hts_pos, state = "Okun")
Error in `validate_recent()`:
! state(s) is/are not contained in the supplied data. Check the spelling and/or case.
Backtrace:
▆
1. └─tidyndr::hts_recent(hts_pos, state = "Okun")
2. └─tidyndr:::validate_recent(data, from, to, states, facilities)
3. └─rlang::abort("state(s) is/are not contained in the supplied data. Check the spelling and/or case.")
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [18s/30s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidyndr)
Attaching package: 'tidyndr'
A package for analysis of the front-end patient-level data from the Nigeria National Data Repository.
>
> test_check("tidyndr")
`curl` package not installed, falling back to using `url()`
Three new variables created:
[1] `date_lost`
[2] `appointment_date
[2] `current_status
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-cot_cascade.R:2'): cot_cascade works fine ────────────────────
cot_cascade(ndr_example, quarter = 1) (`actual`) not identical to {
...
} (`expected`).
actual vs expected
tx_new tx_ml tx_ml_dead tx_ml_to tx_ml_iit iit_rate
- actual[1, ] 0 0 0 0 0 0.000
+ expected[1, ] 39 60 2 2 56 8.272
- actual[2, ] 0 0 0 0 0 0.000
+ expected[2, ] 230 302 21 22 259 7.813
- actual[3, ] 0 0 0 0 0 0.000
+ expected[3, ] 283 373 18 20 335 7.793
- actual[4, ] 0 0 0 0 0 0.000
+ expected[4, ] 191 240 18 17 205 7.113
- actual[5, ] 0 0 0 0 0 0.000
+ expected[5, ] 743 975 59 61 855 7.652
`actual$tx_new`: 0 0 0 0 0
`expected$tx_new`: 39 230 283 191 743
`actual$tx_ml`: 0 0 0 0 0
`expected$tx_ml`: 60 302 373 240 975
`actual$tx_ml_dead`: 0 0 0 0 0
`expected$tx_ml_dead`: 2 21 18 18 59
`actual$tx_ml_to`: 0 0 0 0 0
`expected$tx_ml_to`: 2 22 20 17 61
`actual$tx_ml_iit`: 0 0 0 0 0
`expected$tx_ml_iit`: 56 259 335 205 855
`actual$iit_rate`: 0 0 0 0 0
`expected$iit_rate`: 8 8 8 7 8
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘spelling.R’
Running ‘testthat.R’ [18s/21s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidyndr)
Attaching package: 'tidyndr'
A package for analysis of the front-end patient-level data from the Nigeria National Data Repository.
>
> test_check("tidyndr")
Three new variables created:
[1] `date_lost`
[2] `appointment_date
[2] `current_status
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-cot_cascade.R:2'): cot_cascade works fine ────────────────────
cot_cascade(ndr_example, quarter = 1) (`actual`) not identical to {
...
} (`expected`).
actual vs expected
tx_new tx_ml tx_ml_dead tx_ml_to tx_ml_iit iit_rate
- actual[1, ] 0 0 0 0 0 0.000
+ expected[1, ] 39 60 2 2 56 8.272
- actual[2, ] 0 0 0 0 0 0.000
+ expected[2, ] 230 302 21 22 259 7.813
- actual[3, ] 0 0 0 0 0 0.000
+ expected[3, ] 283 373 18 20 335 7.793
- actual[4, ] 0 0 0 0 0 0.000
+ expected[4, ] 191 240 18 17 205 7.113
- actual[5, ] 0 0 0 0 0 0.000
+ expected[5, ] 743 975 59 61 855 7.652
`actual$tx_new`: 0 0 0 0 0
`expected$tx_new`: 39 230 283 191 743
`actual$tx_ml`: 0 0 0 0 0
`expected$tx_ml`: 60 302 373 240 975
`actual$tx_ml_dead`: 0 0 0 0 0
`expected$tx_ml_dead`: 2 21 18 18 59
`actual$tx_ml_to`: 0 0 0 0 0
`expected$tx_ml_to`: 2 22 20 17 61
`actual$tx_ml_iit`: 0 0 0 0 0
`expected$tx_ml_iit`: 56 259 335 205 855
`actual$iit_rate`: 0 0 0 0 0
`expected$iit_rate`: 8 8 8 7 8
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.2.1
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(tidyndr)
Attaching package: 'tidyndr'
A package for analysis of the front-end patient-level data from the Nigeria National Data Repository.
>
> test_check("tidyndr")
`curl` package not installed, falling back to using `url()`
Three new variables created:
[1] `date_lost`
[2] `appointment_date
[2] `current_status
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure (test-cot_cascade.R:2:3): cot_cascade works fine ────────────────────
cot_cascade(ndr_example, quarter = 1) (`actual`) not identical to {
...
} (`expected`).
actual vs expected
tx_new tx_ml tx_ml_dead tx_ml_to tx_ml_iit iit_rate
- actual[1, ] 0 0 0 0 0 0.000
+ expected[1, ] 39 60 2 2 56 8.272
- actual[2, ] 0 0 0 0 0 0.000
+ expected[2, ] 230 302 21 22 259 7.813
- actual[3, ] 0 0 0 0 0 0.000
+ expected[3, ] 283 373 18 20 335 7.793
- actual[4, ] 0 0 0 0 0 0.000
+ expected[4, ] 191 240 18 17 205 7.113
- actual[5, ] 0 0 0 0 0 0.000
+ expected[5, ] 743 975 59 61 855 7.652
`actual$tx_new`: 0 0 0 0 0
`expected$tx_new`: 39 230 283 191 743
`actual$tx_ml`: 0 0 0 0 0
`expected$tx_ml`: 60 302 373 240 975
`actual$tx_ml_dead`: 0 0 0 0 0
`expected$tx_ml_dead`: 2 21 18 18 59
`actual$tx_ml_to`: 0 0 0 0 0
`expected$tx_ml_to`: 2 22 20 17 61
`actual$tx_ml_iit`: 0 0 0 0 0
`expected$tx_ml_iit`: 56 259 335 205 855
`actual$iit_rate`: 0 0 0 0 0
`expected$iit_rate`: 8 8 8 7 8
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [14s/19s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidyndr)
Attaching package: 'tidyndr'
A package for analysis of the front-end patient-level data from the Nigeria National Data Repository.
>
> test_check("tidyndr")
`curl` package not installed, falling back to using `url()`
Three new variables created:
[1] `date_lost`
[2] `appointment_date
[2] `current_status
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-cot_cascade.R:2'): cot_cascade works fine ────────────────────
cot_cascade(ndr_example, quarter = 1) (`actual`) not identical to {
...
} (`expected`).
actual vs expected
tx_new tx_ml tx_ml_dead tx_ml_to tx_ml_iit iit_rate
- actual[1, ] 0 0 0 0 0 0.000
+ expected[1, ] 39 60 2 2 56 8.272
- actual[2, ] 0 0 0 0 0 0.000
+ expected[2, ] 230 302 21 22 259 7.813
- actual[3, ] 0 0 0 0 0 0.000
+ expected[3, ] 283 373 18 20 335 7.793
- actual[4, ] 0 0 0 0 0 0.000
+ expected[4, ] 191 240 18 17 205 7.113
- actual[5, ] 0 0 0 0 0 0.000
+ expected[5, ] 743 975 59 61 855 7.652
`actual$tx_new`: 0 0 0 0 0
`expected$tx_new`: 39 230 283 191 743
`actual$tx_ml`: 0 0 0 0 0
`expected$tx_ml`: 60 302 373 240 975
`actual$tx_ml_dead`: 0 0 0 0 0
`expected$tx_ml_dead`: 2 21 18 18 59
`actual$tx_ml_to`: 0 0 0 0 0
`expected$tx_ml_to`: 2 22 20 17 61
`actual$tx_ml_iit`: 0 0 0 0 0
`expected$tx_ml_iit`: 56 259 335 205 855
`actual$iit_rate`: 0 0 0 0 0
`expected$iit_rate`: 8 8 8 7 8
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.2.1
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [14s/20s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(tidyndr)
Attaching package: 'tidyndr'
A package for analysis of the front-end patient-level data from the Nigeria National Data Repository.
>
> test_check("tidyndr")
`curl` package not installed, falling back to using `url()`
Three new variables created:
[1] `date_lost`
[2] `appointment_date
[2] `current_status
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-cot_cascade.R:2'): cot_cascade works fine ────────────────────
cot_cascade(ndr_example, quarter = 1) (`actual`) not identical to {
...
} (`expected`).
actual vs expected
tx_new tx_ml tx_ml_dead tx_ml_to tx_ml_iit iit_rate
- actual[1, ] 0 0 0 0 0 0.000
+ expected[1, ] 39 60 2 2 56 8.272
- actual[2, ] 0 0 0 0 0 0.000
+ expected[2, ] 230 302 21 22 259 7.813
- actual[3, ] 0 0 0 0 0 0.000
+ expected[3, ] 283 373 18 20 335 7.793
- actual[4, ] 0 0 0 0 0 0.000
+ expected[4, ] 191 240 18 17 205 7.113
- actual[5, ] 0 0 0 0 0 0.000
+ expected[5, ] 743 975 59 61 855 7.652
`actual$tx_new`: 0 0 0 0 0
`expected$tx_new`: 39 230 283 191 743
`actual$tx_ml`: 0 0 0 0 0
`expected$tx_ml`: 60 302 373 240 975
`actual$tx_ml_dead`: 0 0 0 0 0
`expected$tx_ml_dead`: 2 21 18 18 59
`actual$tx_ml_to`: 0 0 0 0 0
`expected$tx_ml_to`: 2 22 20 17 61
`actual$tx_ml_iit`: 0 0 0 0 0
`expected$tx_ml_iit`: 56 259 335 205 855
`actual$iit_rate`: 0 0 0 0 0
`expected$iit_rate`: 8 8 8 7 8
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.2.1
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [16s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(tidyndr)
Attaching package: 'tidyndr'
A package for analysis of the front-end patient-level data from the Nigeria National Data Repository.
>
> test_check("tidyndr")
`curl` package not installed, falling back to using `url()`
Three new variables created:
[1] `date_lost`
[2] `appointment_date
[2] `current_status
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-cot_cascade.R:2'): cot_cascade works fine ────────────────────
cot_cascade(ndr_example, quarter = 1) (`actual`) not identical to {
...
} (`expected`).
actual vs expected
tx_new tx_ml tx_ml_dead tx_ml_to tx_ml_iit iit_rate
- actual[1, ] 0 0 0 0 0 0.000
+ expected[1, ] 39 60 2 2 56 8.272
- actual[2, ] 0 0 0 0 0 0.000
+ expected[2, ] 230 302 21 22 259 7.813
- actual[3, ] 0 0 0 0 0 0.000
+ expected[3, ] 283 373 18 20 335 7.793
- actual[4, ] 0 0 0 0 0 0.000
+ expected[4, ] 191 240 18 17 205 7.113
- actual[5, ] 0 0 0 0 0 0.000
+ expected[5, ] 743 975 59 61 855 7.652
`actual$tx_new`: 0 0 0 0 0
`expected$tx_new`: 39 230 283 191 743
`actual$tx_ml`: 0 0 0 0 0
`expected$tx_ml`: 60 302 373 240 975
`actual$tx_ml_dead`: 0 0 0 0 0
`expected$tx_ml_dead`: 2 21 18 18 59
`actual$tx_ml_to`: 0 0 0 0 0
`expected$tx_ml_to`: 2 22 20 17 61
`actual$tx_ml_iit`: 0 0 0 0 0
`expected$tx_ml_iit`: 56 259 335 205 855
`actual$iit_rate`: 0 0 0 0 0
`expected$iit_rate`: 8 8 8 7 8
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.2.1
Check: examples
Result: ERROR
Running examples in 'tidyndr-Ex.R' failed
The error most likely occurred in:
> ### Name: hts_recent
> ### Title: Subset Clients who had Recent Infection Test Done during a
> ### period of Interest
> ### Aliases: hts_recent
>
> ### ** Examples
>
> ### Line-list of clients offered recency testing
> hts_recent_clients <- hts_recent(recency_example, from = "2021-07-01", to = "2021-10-31")
>
> hts_pos <- hts_tst_pos(recency_example) # identifies all hts_positive clients
> # line-list positive clients offered recency testing in 'Okun' state
> hts_recent(hts_pos, state = "Okun")
Error in `validate_recent()`:
! state(s) is/are not contained in the supplied data. Check the spelling and/or case.
Backtrace:
x
1. \-tidyndr::hts_recent(hts_pos, state = "Okun")
2. \-tidyndr:::validate_recent(data, from, to, states, facilities)
3. \-rlang::abort("state(s) is/are not contained in the supplied data. Check the spelling and/or case.")
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64
Version: 0.2.1
Check: tests
Result: ERROR
Running 'spelling.R' [0s]
Running 'testthat.R' [17s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(tidyndr)
Attaching package: 'tidyndr'
A package for analysis of the front-end patient-level data from the Nigeria National Data Repository.
>
> test_check("tidyndr")
`curl` package not installed, falling back to using `url()`
Three new variables created:
[1] `date_lost`
[2] `appointment_date
[2] `current_status
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
== Failed tests ================================================================
-- Failure (test-cot_cascade.R:2:3): cot_cascade works fine --------------------
cot_cascade(ndr_example, quarter = 1) (`actual`) not identical to {
...
} (`expected`).
actual vs expected
tx_new tx_ml tx_ml_dead tx_ml_to tx_ml_iit iit_rate
- actual[1, ] 0 0 0 0 0 0.000
+ expected[1, ] 39 60 2 2 56 8.272
- actual[2, ] 0 0 0 0 0 0.000
+ expected[2, ] 230 302 21 22 259 7.813
- actual[3, ] 0 0 0 0 0 0.000
+ expected[3, ] 283 373 18 20 335 7.793
- actual[4, ] 0 0 0 0 0 0.000
+ expected[4, ] 191 240 18 17 205 7.113
- actual[5, ] 0 0 0 0 0 0.000
+ expected[5, ] 743 975 59 61 855 7.652
`actual$tx_new`: 0 0 0 0 0
`expected$tx_new`: 39 230 283 191 743
`actual$tx_ml`: 0 0 0 0 0
`expected$tx_ml`: 60 302 373 240 975
`actual$tx_ml_dead`: 0 0 0 0 0
`expected$tx_ml_dead`: 2 21 18 18 59
`actual$tx_ml_to`: 0 0 0 0 0
`expected$tx_ml_to`: 2 22 20 17 61
`actual$tx_ml_iit`: 0 0 0 0 0
`expected$tx_ml_iit`: 56 259 335 205 855
`actual$iit_rate`: 0 0 0 0 0
`expected$iit_rate`: 8 8 8 7 8
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 26 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64