Last updated on 2022-10-30 07:55:23 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.0.4 | ERROR | ||||
| r-devel-linux-x86_64-debian-gcc | 0.0.4 | 0.24 | 2.37 | 2.61 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.0.4 | 13.96 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.0.4 | 13.82 | ERROR | |||
| r-devel-windows-x86_64 | 0.0.4 | 43.00 | 344.00 | 387.00 | ERROR | |
| r-patched-linux-x86_64 | 0.0.4 | 0.31 | 3.01 | 3.32 | ERROR | |
| r-release-linux-x86_64 | 0.0.4 | 0.34 | 3.12 | 3.46 | ERROR | |
| r-release-macos-arm64 | 0.0.4 | 105.00 | OK | |||
| r-release-macos-x86_64 | 0.0.4 | 160.00 | OK | |||
| r-release-windows-x86_64 | 0.0.4 | 33.00 | 333.00 | 366.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.0.4 | 98.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.0.4 | 155.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 0.0.4 | 59.00 | 345.00 | 404.00 | ERROR |
Version: 0.0.4
Check: package dependencies
Result: ERROR
Package required but not available: 'harmony'
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 0.0.4
Check: examples
Result: ERROR
Running examples in 'scAnnotate-Ex.R' failed
The error most likely occurred in:
> ### Name: scAnnotate
> ### Title: scAnnotate
> ### Aliases: scAnnotate
>
> ### ** Examples
>
> data(pbmc1)
> data(pbmc2)
> predict_label=scAnnotate(train=pbmc1,
+ test=pbmc2[,-1],
+ distribution="normal",
+ correction ="harmony",
+ screening ="wilcox",
+ threshold=0,
+ lognormalized=TRUE)
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Centering and scaling data matrix
|
| | 0%
|
|=================================== | 50%
|
|======================================================================| 100%
PC_ 1
Positive: COTL1, CST3, LST1, PSAP, CTSS, TYROBP, FCGR3A, IFITM3, SERPINA1, LYN
FCER1G, AIF1, CEBPB, NEAT1, CDKN1C, MS4A7, FTL, MAFB, SPI1, CD68
FTH1, PECAM1, S100A11, TNFRSF1B, LYZ, FCN1, SAT1, POU2F2, NPC2, HCK
Negative: CCL5, IL32, ETS1, RPS6, TRBC2, RPS15A, CXCR4, RPS3, NKG7, CST7
RPS21, AP000769.1, GZMA, GZMH, TRBC1, RPLP1, SIAE, SYNE2, RPS5, GNLY
SLC25A37, RPS26, MS4A1, CD8A, JUN, FGFBP2, OGG1, ZNF302, GZMB, IGHM
PC_ 2
Positive: ZNF302, SLC25A37, ATP2A2, GMFB, DDX39B, GTF2I, OGG1, SMG1, SIAE, RP11.122M14.1
RP11.382A20.3, RAB11A, PRKAA2, RP3.325F22.5, MALAT1, NCALD, TPM3, RP11.529K1.4, PAK2, SAT1
S100A4, S100A6, GABRE, AIF1, NCL, GABRB1, EMC10, FOS, AP000769.1, LST1
Negative: MT.ND3, CD74, CD37, CD79A, IGHM, HLA.DRA, IGKC, HLA.DRB1, HLA.DPA1, IGHD
RPL36A, IGLC2, TCL1A, IGLC3, MS4A1, KLF2, HLA.DPB1, IGHG1, LTB, BANK1
JUND, BTG1, RPS10, BIRC3, ZFP36L2, TNFRSF13C, IL4R, PABPN1, SEMA4B, CD52
PC_ 3
Positive: HLA.DRA, MS4A1, IGHM, CD79A, HLA.DPB1, CD74, BANK1, HLA.DPA1, HLA.DRB1, LTB
IGKC, IGHD, RPS6, RPS21, SLC25A37, CD37, IGHG1, ZNF302, NAP1L1, IGLC2
BIRC3, OGG1, TCL1A, RPLP1, RP11.382A20.3, RPS5, IGLC3, GMFB, ATP2A2, SIAE
Negative: NKG7, CCL5, PFN1, CST7, PRF1, ARL4C, GNLY, FGFBP2, EFHD2, IL32
GZMB, SRGN, GZMA, CD247, CALM1, IL2RB, RUNX3, CD8A, PTP4A2, GZMH
TGFBR3, S100A4, TRBC1, ABCG1, FLNA, SSBP3, ZFP36L2, GZMM, TNFAIP3, IRF2BP2
PC_ 4
Positive: JUND, KLF6, NEAT1, GABRB1, DUSP1, ABCG1, NFKBIA, RPS4Y1, PAK2, RP3.325F22.5
FOS, IGHM, HNRNPL, IFI44L, EIF5AL1, TNFRSF13C, ZNF326, METRNL, RP11.529K1.4, AC008914.1
CD83, MYH11, PABPN1, ZBTB7A, CD79A, IRF2BP2, RP11.1143G9.4, SLC2A1.AS1, AC004069.2, IGKC
Negative: RPLP1, RPS26, IFITM2, RPS3, RPS15A, MTRNR2L1, ACTG1, RPS6, CD52, RPS21
FCER1G, S100A11, ITGB2, FCGR3A, S100A6, GZMA, RPS10, IL32, KLRB1, C1QA
HCK, LINC01272, TYROBP, HLA.DPA1, HMOX1, CCL5, TRBC1, IL7R, RPS5, GZMH
PC_ 5
Positive: AC008914.1, RPS5, RPS15A, MS4A1, HLA.DPB1, LTB, MYH11, BANK1, SLC4A1, CD79A
PFN1, RPS21, RPS26, DTWD1, CD52, KLF6, RP11.1143G9.4, FTH1, KLF2, SLC37A1
RBM3, ARHGAP26, AP5B1, LEMD2, IGHM, IGHG1, JUN, ICOSLG, FTL, ZBTB7A
Negative: RABL2A, CRY2, TANC2, SLC41A3, TSPAN33, FAM160B1, AC008079.10, PIP4K2B, EIF2AK3, C16orf52
ZFYVE1, RP11.890B15.2, ARHGAP32, PAK4, EPHA4, MED14, GPRASP1, ACAD10, CTC.325J23.2, SEMA3C
RP11.394O4.5, GDPGP1, ALDH16A1, SNX30, CTD.2620I22.3, AP000438.2, C1QTNF3.AMACR, TMEM57, COPS8, HELZ2
Harmony 1/10
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Error in harmonyObj$cluster_cpp() :
element-wise pow(): incompatible matrix dimensions: 41x2 and 2x1
Calls: scAnnotate ... HarmonyMatrix -> harmonize -> cluster -> <Anonymous> -> .External
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.0.4
Check: examples
Result: ERROR
Running examples in 'scAnnotate-Ex.R' failed
The error most likely occurred in:
> ### Name: scAnnotate
> ### Title: scAnnotate
> ### Aliases: scAnnotate
>
> ### ** Examples
>
> data(pbmc1)
> data(pbmc2)
> predict_label=scAnnotate(train=pbmc1,
+ test=pbmc2[,-1],
+ distribution="normal",
+ correction ="harmony",
+ screening ="wilcox",
+ threshold=0,
+ lognormalized=TRUE)
Calculating gene variances
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Calculating feature variances of standardized and clipped values
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Centering and scaling data matrix
|
| | 0%
|
|=================================== | 50%
|
|======================================================================| 100%
PC_ 1
Positive: COTL1, CST3, LST1, PSAP, CTSS, TYROBP, FCGR3A, IFITM3, SERPINA1, LYN
FCER1G, AIF1, CEBPB, NEAT1, CDKN1C, MS4A7, FTL, MAFB, SPI1, CD68
FTH1, PECAM1, S100A11, TNFRSF1B, LYZ, FCN1, SAT1, POU2F2, NPC2, HCK
Negative: CCL5, IL32, ETS1, RPS6, TRBC2, RPS15A, CXCR4, RPS3, NKG7, CST7
RPS21, AP000769.1, GZMA, GZMH, TRBC1, RPLP1, SIAE, SYNE2, RPS5, GNLY
SLC25A37, RPS26, MS4A1, CD8A, JUN, FGFBP2, OGG1, ZNF302, GZMB, IGHM
PC_ 2
Positive: MT.ND3, CD74, CD37, CD79A, IGHM, HLA.DRA, IGKC, HLA.DRB1, HLA.DPA1, IGHD
RPL36A, IGLC2, TCL1A, IGLC3, MS4A1, KLF2, HLA.DPB1, IGHG1, LTB, BANK1
JUND, BTG1, RPS10, BIRC3, ZFP36L2, TNFRSF13C, IL4R, PABPN1, SEMA4B, CD52
Negative: ZNF302, SLC25A37, ATP2A2, GMFB, DDX39B, GTF2I, OGG1, SMG1, SIAE, RP11.122M14.1
RP11.382A20.3, RAB11A, PRKAA2, RP3.325F22.5, MALAT1, NCALD, TPM3, RP11.529K1.4, PAK2, SAT1
S100A4, S100A6, GABRE, AIF1, NCL, GABRB1, EMC10, FOS, AP000769.1, LST1
PC_ 3
Positive: NKG7, CCL5, PFN1, CST7, PRF1, ARL4C, GNLY, FGFBP2, EFHD2, IL32
GZMB, SRGN, GZMA, CD247, CALM1, IL2RB, RUNX3, CD8A, PTP4A2, GZMH
TGFBR3, S100A4, TRBC1, ABCG1, FLNA, SSBP3, ZFP36L2, GZMM, TNFAIP3, IRF2BP2
Negative: HLA.DRA, MS4A1, IGHM, CD79A, HLA.DPB1, CD74, BANK1, HLA.DPA1, HLA.DRB1, LTB
IGKC, IGHD, RPS6, RPS21, SLC25A37, CD37, IGHG1, ZNF302, NAP1L1, IGLC2
BIRC3, OGG1, TCL1A, RPLP1, RP11.382A20.3, RPS5, IGLC3, GMFB, ATP2A2, SIAE
PC_ 4
Positive: JUND, KLF6, NEAT1, GABRB1, DUSP1, ABCG1, NFKBIA, RPS4Y1, PAK2, RP3.325F22.5
FOS, IGHM, HNRNPL, IFI44L, EIF5AL1, TNFRSF13C, ZNF326, METRNL, RP11.529K1.4, AC008914.1
CD83, MYH11, PABPN1, ZBTB7A, CD79A, IRF2BP2, RP11.1143G9.4, SLC2A1.AS1, AC004069.2, IGKC
Negative: RPLP1, RPS26, IFITM2, RPS3, RPS15A, MTRNR2L1, ACTG1, RPS6, CD52, RPS21
FCER1G, S100A11, ITGB2, FCGR3A, S100A6, GZMA, RPS10, IL32, KLRB1, C1QA
HCK, LINC01272, TYROBP, HLA.DPA1, HMOX1, CCL5, TRBC1, IL7R, RPS5, GZMH
PC_ 5
Positive: RABL2A, CRY2, TANC2, SLC41A3, TSPAN33, FAM160B1, AC008079.10, PIP4K2B, EIF2AK3, C16orf52
ZFYVE1, RP11.890B15.2, ARHGAP32, PAK4, EPHA4, MED14, GPRASP1, ACAD10, CTC.325J23.2, SEMA3C
RP11.394O4.5, GDPGP1, ALDH16A1, SNX30, AP000438.2, CTD.2620I22.3, C1QTNF3.AMACR, TMEM57, COPS8, HELZ2
Negative: AC008914.1, RPS5, RPS15A, MS4A1, HLA.DPB1, LTB, MYH11, BANK1, SLC4A1, CD79A
PFN1, RPS21, RPS26, DTWD1, CD52, KLF6, RP11.1143G9.4, FTH1, KLF2, SLC37A1
RBM3, ARHGAP26, AP5B1, LEMD2, IGHM, IGHG1, JUN, ICOSLG, FTL, ZBTB7A
Harmony 1/10
0% 10 20 30 40 50 60 70 80 90 100%
[----|----|----|----|----|----|----|----|----|----|
**************************************************|
Error in harmonyObj$cluster_cpp() :
element-wise pow(): incompatible matrix dimensions: 41x2 and 2x1
Calls: scAnnotate ... HarmonyMatrix -> harmonize -> cluster -> <Anonymous> -> .External
Execution halted
Flavors: r-release-windows-x86_64, r-oldrel-windows-ix86+x86_64