Error(s) in re-building vignettes:
--- re-building ‘dynamAedes_local.Rmd’ using rmarkdown
Loading required package: spatstat
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 3.0-3
Loading required package: spatstat.random
spatstat.random 3.0-1
Loading required package: spatstat.explore
Loading required package: nlme
spatstat.explore 3.0-5
Loading required package: spatstat.model
Loading required package: rpart
spatstat.model 3.0-2
Loading required package: spatstat.linnet
spatstat.linnet 3.0-3

spatstat 3.0-2 
For an introduction to spatstat, type 'beginner' 

Loading required package: sp
Loading required package: gstat

Attaching package: 'gstat'

The following object is masked from 'package:spatstat.explore':

    idw

Loading required package: parallel
Loading required package: eesim
Loading required package: tidyverse
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.2 ──
✔ ggplot2 3.4.0      ✔ purrr   0.3.5 
✔ tibble  3.1.8      ✔ dplyr   1.0.10
✔ tidyr   1.2.1      ✔ stringr 1.4.1 
✔ readr   2.1.3      ✔ forcats 0.5.2 
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::collapse() masks nlme::collapse()
✖ dplyr::filter()   masks stats::filter()
✖ dplyr::lag()      masks stats::lag()
Loading required package: geosphere

Attaching package: 'geosphere'

The following object is masked from 'package:spatstat.geom':

    perimeter

Loading required package: rgeos
rgeos version: 0.5-9, (SVN revision 684)
 GEOS runtime version: 3.10.2-CAPI-1.16.0 
 Please note that rgeos will be retired by the end of 2023,
plan transition to sf functions using GEOS at your earliest convenience.
 GEOS using OverlayNG
 Linking to sp version: 1.5-1 
 Polygon checking: TRUE 

Loading required package: dynamAedes
Loading required package: raster

Attaching package: 'raster'

The following object is masked from 'package:dplyr':

    select

The following object is masked from 'package:nlme':

    getData

starting worker pid=1351353 on localhost:11730 at 14:03:54.777
##########################################
## Life cycle iterations have begun... ##
##########################################
Loading required package: dynamAedes
Loading required package: raster
Loading required package: sp
loaded dynamAedes and set parent environment

  |                                                                            
  |%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%| 100%[1] "No active dispersing females today..."

2000-06-03. Day 1-- of iteration 1 has ended. Population is e: 0 i: 0 a: 4642 d: 0 eh: 0 el: 96449 
Max t: 28.528 

[1] "No active dispersing females today..."

2000-06-04. Day 2-- of iteration 1 has ended. Population is e: 96449 i: 0 a: 908 d: 0 eh: 0 el: 87670 
Max t: 33.067 


2000-06-05. Day 3-- of iteration 1 has ended. Population is e: 145164 i: 0 a: 667 d: 0 eh: 0 el: 0 
Max t: 33.176 

[1] "No active dispersing females today..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-06. Day 4-- of iteration 1 has ended. Population is e: 97611 i: 0 a: 552 d: 0 eh: 0 el: 11607 
Max t: 32.396 

[1] "No active dispersing females today..."

2000-06-07. Day 5-- of iteration 1 has ended. Population is e: 94504 i: 16925 a: 127 d: 0 eh: 16925 el: 10194 
Max t: 29.701 


2000-06-08. Day 6-- of iteration 1 has ended. Population is e: 70933 i: 33194 a: 103 d: 0 eh: 19439 el: 0 
Max t: 31.715 

[1] "No active dispersing females today..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-09. Day 7-- of iteration 1 has ended. Population is e: 46352 i: 40022 a: 89 d: 0 eh: 12608 el: 2422 
Max t: 31.506 

[1] "No active dispersing females today..."

2000-06-10. Day 8-- of iteration 1 has ended. Population is e: 30106 i: 31075 a: 18 d: 0 eh: 5828 el: 2011 
Max t: 33.415 


2000-06-11. Day 9-- of iteration 1 has ended. Population is e: 24281 i: 33299 a: 17 d: 0 eh: 7840 el: 0 
Max t: 31.558 

[1] "No active dispersing females today..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-12. Day 10-- of iteration 1 has ended. Population is e: 14300 i: 17808 a: 4 d: 0 eh: 2164 el: 325 
Max t: 34.528 

[1] "No active dispersing females today..."

2000-06-13. Day 11-- of iteration 1 has ended. Population is e: 11892 i: 16686 a: 619 d: 0 eh: 4002 el: 155 
Max t: 31.783 


2000-06-14. Day 12-- of iteration 1 has ended. Population is e: 7396 i: 7958 a: 875 d: 0 eh: 1039 el: 0 
Max t: 34.908 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-15. Day 13-- of iteration 1 has ended. Population is e: 6247 i: 8047 a: 1405 d: 0 eh: 2733 el: 6817 
Max t: 30.567 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-16. Day 14-- of iteration 1 has ended. Population is e: 10264 i: 8226 a: 1331 d: 0 eh: 1545 el: 14118 
Max t: 30.22 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-17. Day 15-- of iteration 1 has ended. Population is e: 16134 i: 708 a: 60 d: 0 eh: 1 el: 0 
Max t: 39.83 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-18. Day 16-- of iteration 1 has ended. Population is e: 11704 i: 671 a: 46 d: 0 eh: 603 el: 359 
Max t: 32.185 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-19. Day 17-- of iteration 1 has ended. Population is e: 6882 i: 689 a: 34 d: 0 eh: 274 el: 1119 
Max t: 33.781 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-20. Day 18-- of iteration 1 has ended. Population is e: 4759 i: 952 a: 22 d: 0 eh: 644 el: 810 
Max t: 34.575 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-21. Day 19-- of iteration 1 has ended. Population is e: 4628 i: 1678 a: 20 d: 0 eh: 938 el: 319 
Max t: 32.281 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-22. Day 20-- of iteration 1 has ended. Population is e: 3330 i: 1179 a: 17 d: 0 eh: 358 el: 326 
Max t: 34.466 

[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-23. Day 21-- of iteration 1 has ended. Population is e: 2893 i: 1159 a: 6 d: 0 eh: 480 el: 151 
Max t: 34.218 

[1] "No active dispersing females today..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-24. Day 22-- of iteration 1 has ended. Population is e: 2354 i: 1431 a: 13 d: 0 eh: 604 el: 84 
Max t: 33.042 


2000-06-25. Day 23-- of iteration 1 has ended. Population is e: 1676 i: 1345 a: 14 d: 0 eh: 345 el: 0 
Max t: 33.69 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-26. Day 24-- of iteration 1 has ended. Population is e: 1241 i: 1295 a: 29 d: 0 eh: 356 el: 364 
Max t: 33.53 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-27. Day 25-- of iteration 1 has ended. Population is e: 1145 i: 385 a: 14 d: 0 eh: 21 el: 103 
Max t: 38.147 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-28. Day 26-- of iteration 1 has ended. Population is e: 1114 i: 585 a: 25 d: 0 eh: 290 el: 132 
Max t: 32.12 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-29. Day 27-- of iteration 1 has ended. Population is e: 901 i: 709 a: 38 d: 0 eh: 214 el: 229 
Max t: 31.405 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-06-30. Day 28-- of iteration 1 has ended. Population is e: 782 i: 596 a: 50 d: 0 eh: 117 el: 804 
Max t: 33.832 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-01. Day 29-- of iteration 1 has ended. Population is e: 1322 i: 449 a: 65 d: 0 eh: 80 el: 813 
Max t: 34.434 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-02. Day 30-- of iteration 1 has ended. Population is e: 1740 i: 342 a: 70 d: 1 eh: 56 el: 779 
Max t: 34.72 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-03. Day 31-- of iteration 1 has ended. Population is e: 2239 i: 385 a: 68 d: 0 eh: 115 el: 1045 
Max t: 32.843 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-04. Day 32-- of iteration 1 has ended. Population is e: 2942 i: 641 a: 63 d: 0 eh: 325 el: 745 
Max t: 31.574 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-05. Day 33-- of iteration 1 has ended. Population is e: 2386 i: 505 a: 49 d: 0 eh: 159 el: 571 
Max t: 36.498 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-06. Day 34-- of iteration 1 has ended. Population is e: 2465 i: 785 a: 44 d: 0 eh: 365 el: 484 
Max t: 33.088 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-07. Day 35-- of iteration 1 has ended. Population is e: 2370 i: 1136 a: 42 d: 0 eh: 444 el: 637 
Max t: 31.992 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-08. Day 36-- of iteration 1 has ended. Population is e: 2255 i: 1343 a: 26 d: 0 eh: 368 el: 612 
Max t: 33.313 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-09. Day 37-- of iteration 1 has ended. Population is e: 2215 i: 1489 a: 27 d: 0 eh: 351 el: 548 
Max t: 33.38 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-10. Day 38-- of iteration 1 has ended. Population is e: 1857 i: 1141 a: 38 d: 0 eh: 158 el: 388 
Max t: 36.124 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-11. Day 39-- of iteration 1 has ended. Population is e: 1791 i: 1216 a: 63 d: 0 eh: 289 el: 345 
Max t: 33.931 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-12. Day 40-- of iteration 1 has ended. Population is e: 1505 i: 1025 a: 84 d: 0 eh: 203 el: 503 
Max t: 35.316 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-13. Day 41-- of iteration 1 has ended. Population is e: 1632 i: 1103 a: 120 d: 0 eh: 303 el: 1032 
Max t: 32.632 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-14. Day 42-- of iteration 1 has ended. Population is e: 2116 i: 1041 a: 142 d: 0 eh: 184 el: 1204 
Max t: 34.101 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-15. Day 43-- of iteration 1 has ended. Population is e: 2862 i: 1071 a: 145 d: 0 eh: 236 el: 1474 
Max t: 32.916 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-16. Day 44-- of iteration 1 has ended. Population is e: 3649 i: 1094 a: 138 d: 0 eh: 229 el: 1805 
Max t: 33.752 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-17. Day 45-- of iteration 1 has ended. Population is e: 4869 i: 1442 a: 150 d: 0 eh: 513 el: 2546 
Max t: 31.605 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-18. Day 46-- of iteration 1 has ended. Population is e: 6536 i: 1973 a: 159 d: 0 eh: 702 el: 1734 
Max t: 30.666 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-19. Day 47-- of iteration 1 has ended. Population is e: 4844 i: 1221 a: 115 d: 0 eh: 228 el: 1379 
Max t: 37.596 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-20. Day 48-- of iteration 1 has ended. Population is e: 5015 i: 1419 a: 133 d: 0 eh: 551 el: 1818 
Max t: 34.574 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-21. Day 49-- of iteration 1 has ended. Population is e: 5984 i: 2352 a: 136 d: 0 eh: 1070 el: 1933 
Max t: 30.584 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-22. Day 50-- of iteration 1 has ended. Population is e: 6301 i: 3060 a: 127 d: 0 eh: 918 el: 1799 
Max t: 31.858 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-23. Day 51-- of iteration 1 has ended. Population is e: 6714 i: 3885 a: 154 d: 1 eh: 1104 el: 1372 
Max t: 30.56 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-24. Day 52-- of iteration 1 has ended. Population is e: 4401 i: 2204 a: 135 d: 0 eh: 231 el: 1113 
Max t: 37.626 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-25. Day 53-- of iteration 1 has ended. Population is e: 4233 i: 2045 a: 149 d: 1 eh: 540 el: 1478 
Max t: 35.659 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-26. Day 54-- of iteration 1 has ended. Population is e: 4796 i: 2600 a: 174 d: 0 eh: 879 el: 1813 
Max t: 32.225 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-27. Day 55-- of iteration 1 has ended. Population is e: 5063 i: 2687 a: 210 d: 0 eh: 557 el: 2391 
Max t: 33.831 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-28. Day 56-- of iteration 1 has ended. Population is e: 6409 i: 3085 a: 278 d: 1 eh: 795 el: 2585 
Max t: 31.699 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-29. Day 57-- of iteration 1 has ended. Population is e: 7599 i: 3557 a: 341 d: 2 eh: 909 el: 3921 
Max t: 31.456 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-30. Day 58-- of iteration 1 has ended. Population is e: 10057 i: 4319 a: 353 d: 4 eh: 1143 el: 4975 
Max t: 30.678 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-07-31. Day 59-- of iteration 1 has ended. Population is e: 13058 i: 5349 a: 358 d: 6 eh: 1493 el: 4234 
Max t: 30.967 

[1] "Laying diapausing eggs"
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."
[1] "Passively dispersing females stay in the cell of origin. Jumping to the next cell of origin..."

2000-08-01. Day 60-- of iteration 1 has ended. Population is e: 12238 i: 4537 a: 382 d: 3 eh: 777 el: 3227 
Max t: 35.589 




########################################
## Iterations concluded.              ##
########################################



Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
--- finished re-building ‘dynamAedes_local.Rmd’

--- re-building ‘dynamAedes_punctual.Rmd’ using rmarkdown
Loading required package: spatstat
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 3.0-3
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spatstat.random 3.0-1
Loading required package: spatstat.explore
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spatstat.explore 3.0-5
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Loading required package: rpart
spatstat.model 3.0-2
Loading required package: spatstat.linnet
spatstat.linnet 3.0-3

spatstat 3.0-2 
For an introduction to spatstat, type 'beginner' 

Loading required package: sp
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Attaching package: 'gstat'

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    idw

Loading required package: parallel
Loading required package: eesim
Loading required package: tidyverse
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.2 ──
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✔ tibble  3.1.8      ✔ dplyr   1.0.10
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Attaching package: 'geosphere'

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    perimeter

Loading required package: rgeos
rgeos version: 0.5-9, (SVN revision 684)
 GEOS runtime version: 3.10.2-CAPI-1.16.0 
 Please note that rgeos will be retired by the end of 2023,
plan transition to sf functions using GEOS at your earliest convenience.
 GEOS using OverlayNG
 Linking to sp version: 1.5-1 
 Polygon checking: TRUE 

Loading required package: dynamAedes
Loading required package: raster

Attaching package: 'raster'

The following object is masked from 'package:dplyr':

    select

The following object is masked from 'package:nlme':

    getData

Warning in max(cells.coords[, 2]) :
  no non-missing arguments to max; returning -Inf

 ### Model without dispersal ### 

starting worker pid=1403488 on localhost:11653 at 14:12:06.059
##########################################
## Life cycle iterations have begun... ##
##########################################
Loading required package: dynamAedes
Loading required package: raster
Loading required package: sp
loaded dynamAedes and set parent environment

  |                                                                            
  |%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%| 100%


########################################
## Iterations concluded.              ##
########################################



Warning: Using `size` aesthetic for lines was deprecated in ggplot2 3.4.0.
ℹ Please use `linewidth` instead.
--- finished re-building ‘dynamAedes_punctual.Rmd’

--- re-building ‘dynamAedes_regional.Rmd’ using rmarkdown
Loading required package: spatstat
Loading required package: spatstat.data
Loading required package: spatstat.geom
spatstat.geom 3.0-3
Loading required package: spatstat.random
spatstat.random 3.0-1
Loading required package: spatstat.explore
Loading required package: nlme
spatstat.explore 3.0-5
Loading required package: spatstat.model
Loading required package: rpart
spatstat.model 3.0-2
Loading required package: spatstat.linnet
spatstat.linnet 3.0-3

spatstat 3.0-2 
For an introduction to spatstat, type 'beginner' 

Loading required package: sp
Loading required package: gstat

Attaching package: 'gstat'

The following object is masked from 'package:spatstat.explore':

    idw

Loading required package: parallel
Loading required package: eesim
Loading required package: tidyverse
── Attaching packages ─────────────────────────────────────── tidyverse 1.3.2 ──
✔ ggplot2 3.4.0      ✔ purrr   0.3.5 
✔ tibble  3.1.8      ✔ dplyr   1.0.10
✔ tidyr   1.2.1      ✔ stringr 1.4.1 
✔ readr   2.1.3      ✔ forcats 0.5.2 
── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
✖ dplyr::collapse() masks nlme::collapse()
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Attaching package: 'geosphere'

The following object is masked from 'package:spatstat.geom':

    perimeter

Loading required package: rgeos
rgeos version: 0.5-9, (SVN revision 684)
 GEOS runtime version: 3.10.2-CAPI-1.16.0 
 Please note that rgeos will be retired by the end of 2023,
plan transition to sf functions using GEOS at your earliest convenience.
 GEOS using OverlayNG
 Linking to sp version: 1.5-1 
 Polygon checking: TRUE 

Loading required package: dynamAedes
Loading required package: raster

Attaching package: 'raster'

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The following object is masked from 'package:nlme':

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inside
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Error: processing vignette 'dynamAedes_regional.Rmd' failed with diagnostics:
error in evaluating the argument 'obj' in selecting a method for function 'coordinates': package rgdal is required for spTransform methods
--- failed re-building ‘dynamAedes_regional.Rmd’

SUMMARY: processing the following file failed:
  ‘dynamAedes_regional.Rmd’

Error: Vignette re-building failed.
Execution halted