Last updated on 2022-11-23 07:54:14 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.11 | 4.10 | 64.21 | 68.31 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.11 | 3.41 | 45.57 | 48.98 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.11 | 91.13 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.11 | 86.99 | OK | |||
| r-devel-windows-x86_64 | 1.0.11 | 28.00 | 159.00 | 187.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.11 | 5.99 | 57.85 | 63.84 | OK | |
| r-release-linux-x86_64 | 1.0.11 | 4.71 | 57.71 | 62.42 | OK | |
| r-release-macos-arm64 | 1.0.11 | 63.00 | OK | |||
| r-release-macos-x86_64 | 1.0.11 | 72.00 | OK | |||
| r-release-windows-x86_64 | 1.0.11 | 55.00 | 116.00 | 171.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.11 | 66.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.11 | 77.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.0.11 | 10.00 | 91.00 | 101.00 | ERROR |
Version: 1.0.11
Check: tests
Result: ERROR
Running 'testthat.R' [91s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(pmparser)
>
> test_check('pmparser')
[ FAIL 1 | WARN 1 | SKIP 4 | PASS 150 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• On CRAN (4)
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_modify_pubmed_db_std.R:42'): modifyPubmedDb update matches standard ──
Error in `open.connection(con, "rb")`: cannot open the connection to 'https://api.figshare.com/v2/articles/21502470/files'
Backtrace:
▆
1. └─pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:42:2
2. └─pmparser::getCitation(...)
3. └─pmparser:::getCitationInfo()
4. ├─data.table::data.table(jsonlite::fromJSON(latestUrl))
5. └─jsonlite::fromJSON(latestUrl)
6. └─jsonlite:::parse_and_simplify(...)
7. └─jsonlite:::parseJSON(txt, bigint_as_char)
8. └─jsonlite:::parse_con(txt, bigint_as_char)
9. ├─base::open(con, "rb")
10. └─base::open.connection(con, "rb")
[ FAIL 1 | WARN 1 | SKIP 4 | PASS 150 ]
Error: Test failures
In addition: Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.0.11
Check: tests
Result: ERROR
Running 'testthat.R' [22s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(pmparser)
>
> test_check('pmparser')
[ FAIL 2 | WARN 4 | SKIP 4 | PASS 122 ]
== Skipped tests ===============================================================
* On CRAN (4)
== Failed tests ================================================================
-- Error ('test_modify_pubmed_db_dup.R:51'): modifyPubmedDb create is unique ---
Error in `gzfile(file, open = "rb")`: cannot open the connection
Backtrace:
x
1. \-pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_dup.R:51:2
2. \-pmparser::getCitation(...)
3. \-pmparser:::writeTableInChunks(...)
4. +-R.utils::countLines(path)
5. \-R.utils::countLines.default(path)
6. \-base::gzfile(file, open = "rb")
-- Error ('test_modify_pubmed_db_std.R:22'): modifyPubmedDb create matches standard --
Error in `gzfile(file, open = "rb")`: cannot open the connection
Backtrace:
x
1. \-pmparser::modifyPubmedDb(...) at test_modify_pubmed_db_std.R:22:2
2. \-pmparser::getCitation(...)
3. \-pmparser:::writeTableInChunks(...)
4. +-R.utils::countLines(path)
5. \-R.utils::countLines.default(path)
6. \-base::gzfile(file, open = "rb")
[ FAIL 2 | WARN 4 | SKIP 4 | PASS 122 ]
Error: Test failures
In addition: Warning message:
call dbDisconnect() when finished working with a connection
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64