Last updated on 2023-03-01 08:54:38 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2 | 12.25 | 200.16 | 212.41 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.2 | 11.61 | 143.64 | 155.25 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2 | 270.16 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2 | 255.67 | ERROR | |||
| r-devel-windows-x86_64 | 1.2 | 35.00 | 240.00 | 275.00 | ERROR | |
| r-patched-linux-x86_64 | 1.2 | 11.41 | 188.04 | 199.45 | ERROR | |
| r-release-linux-x86_64 | 1.2 | 9.82 | 189.64 | 199.46 | ERROR | |
| r-release-macos-arm64 | 1.2 | 110.00 | OK | |||
| r-release-macos-x86_64 | 1.2 | 309.00 | OK | |||
| r-release-windows-x86_64 | 1.2 | 27.00 | 232.00 | 259.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.2 | 158.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.2 | 229.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.2 | 20.00 | 20.00 | ERROR |
Version: 1.2
Check: examples
Result: ERROR
Running examples in ‘confoundr-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: makehistory.one
> ### Title: Function to create exposure history for a single time varying
> ### exposure.
> ### Aliases: makehistory.one
>
> ### ** Examples
>
> # Simulate wide data set for two subjects
> id <- as.numeric(c(1, 2))
> a_0 <- as.numeric(c(0, 1))
> a_1 <- as.numeric(c(1, 1))
> a_2 <- as.numeric(c(1, 0))
> l_0 <- as.numeric(rbinom(2, 1, 0.5))
> l_1 <- as.numeric(rbinom(2, 1, 0.5))
> l_2 <- as.numeric(rbinom(2, 1, 0.5))
> m_0 <- as.numeric(rbinom(2, 1, 0.5))
> m_1 <- as.numeric(rbinom(2, 1, 0.5))
> m_2 <- as.numeric(rbinom(2, 1, 0.5))
> n_0 <- as.numeric(rbinom(2, 1, 0.5))
> n_1 <- as.numeric(rbinom(2, 1, 0.5))
> n_2 <- as.numeric(rbinom(2, 1, 0.5))
>
> mydata.wide <- data.frame(id, a_0, a_1, a_2,
+ l_0, l_1, l_2,
+ m_0, m_1, m_2,
+ n_0, n_1, n_2)
>
> # Run the makehistory.one() function
> mydata.history <- makehistory.one(input=mydata.wide,
+ id="id",
+ times=c(0,1,2),
+ exposure="a",
+ name.history="h"
+ )
Error in `mutate()`:
ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
Backtrace:
▆
1. ├─confoundr::makehistory.one(...)
2. │ └─... %>% spread(.data$his.name.time, .data$his.value)
3. ├─tidyr::spread(., .data$his.name.time, .data$his.value)
4. ├─tidyr::unite(...)
5. ├─dplyr::select(., .data$ID, c("his.name", "his.time", "his.value"))
6. ├─dplyr::mutate(...)
7. ├─dplyr:::mutate.data.frame(...)
8. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
9. │ ├─base::withCallingHandlers(...)
10. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
11. │ └─mask$eval_all_mutate(quo)
12. │ └─dplyr (local) eval()
13. ├─dplyr::if_else(...)
14. │ └─vctrs::vec_assert(x = condition, ptype = logical(), arg = "condition")
15. │ └─vctrs:::vec_is_vector(x)
16. ├─dplyr::first(.data$his.time, default = "NA")
17. │ └─dplyr::nth(x, 1L, order_by = order_by, default = default, na_rm = na_rm)
18. │ └─dplyr:::check_nth_default(default, x = x)
19. │ └─vctrs::vec_cast(...)
20. └─vctrs (local) `<fn>`()
21. └─vctrs::vec_default_cast(...)
22. ├─base::withRestarts(...)
23. │ └─base (local) withOneRestart(expr, restarts[[1L]])
24. │ └─base (local) doWithOneRestart(return(expr), restart)
25. └─vctrs::stop_incompatible_cast(...)
26. └─vctrs::stop_incompatible_type(...)
27. └─vctrs:::stop_incompatible(...)
28. └─vctrs:::stop_vctrs(...)
29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = vctrs_error_call(call))
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [79s/93s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(confoundr)
>
> test_check("confoundr")
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testMakeHistoryOne.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryOne.r:50'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:71'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘quickdemo.Rmd’ using rmarkdown
Quitting from lines 38-46 (quickdemo.Rmd)
Error: processing vignette ‘quickdemo.Rmd’ failed with diagnostics:
ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
--- failed re-building ‘quickdemo.Rmd’
--- re-building ‘selectionbias.Rmd’ using rmarkdown
Quitting from lines 154-164 (selectionbias.Rmd)
Error: processing vignette ‘selectionbias.Rmd’ failed with diagnostics:
ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1001`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
--- failed re-building ‘selectionbias.Rmd’
SUMMARY: processing the following files failed:
‘quickdemo.Rmd’ ‘selectionbias.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [54s/85s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(confoundr)
>
> test_check("confoundr")
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testMakeHistoryOne.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryOne.r:50'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:71'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2
Check: examples
Result: ERROR
Running examples in ‘confoundr-Ex.R’ failed
The error most likely occurred in:
> ### Name: makehistory.one
> ### Title: Function to create exposure history for a single time varying
> ### exposure.
> ### Aliases: makehistory.one
>
> ### ** Examples
>
> # Simulate wide data set for two subjects
> id <- as.numeric(c(1, 2))
> a_0 <- as.numeric(c(0, 1))
> a_1 <- as.numeric(c(1, 1))
> a_2 <- as.numeric(c(1, 0))
> l_0 <- as.numeric(rbinom(2, 1, 0.5))
> l_1 <- as.numeric(rbinom(2, 1, 0.5))
> l_2 <- as.numeric(rbinom(2, 1, 0.5))
> m_0 <- as.numeric(rbinom(2, 1, 0.5))
> m_1 <- as.numeric(rbinom(2, 1, 0.5))
> m_2 <- as.numeric(rbinom(2, 1, 0.5))
> n_0 <- as.numeric(rbinom(2, 1, 0.5))
> n_1 <- as.numeric(rbinom(2, 1, 0.5))
> n_2 <- as.numeric(rbinom(2, 1, 0.5))
>
> mydata.wide <- data.frame(id, a_0, a_1, a_2,
+ l_0, l_1, l_2,
+ m_0, m_1, m_2,
+ n_0, n_1, n_2)
>
> # Run the makehistory.one() function
> mydata.history <- makehistory.one(input=mydata.wide,
+ id="id",
+ times=c(0,1,2),
+ exposure="a",
+ name.history="h"
+ )
Error in `mutate()`:
ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
Backtrace:
▆
1. ├─confoundr::makehistory.one(...)
2. │ └─... %>% spread(.data$his.name.time, .data$his.value)
3. ├─tidyr::spread(., .data$his.name.time, .data$his.value)
4. ├─tidyr::unite(...)
5. ├─dplyr::select(., .data$ID, c("his.name", "his.time", "his.value"))
6. ├─dplyr::mutate(...)
7. ├─dplyr:::mutate.data.frame(...)
8. │ └─dplyr:::mutate_cols(.data, dplyr_quosures(...), by)
9. │ ├─base::withCallingHandlers(...)
10. │ └─dplyr:::mutate_col(dots[[i]], data, mask, new_columns)
11. │ └─mask$eval_all_mutate(quo)
12. │ └─dplyr (local) eval()
13. ├─dplyr::if_else(...)
14. │ └─vctrs::vec_assert(x = condition, ptype = logical(), arg = "condition")
15. │ └─vctrs:::vec_is_vector(x)
16. ├─dplyr::first(.data$his.time, default = "NA")
17. │ └─dplyr::nth(x, 1L, order_by = order_by, default = default, na_rm = na_rm)
18. │ └─dplyr:::check_nth_default(default, x = x)
19. │ └─vctrs::vec_cast(...)
20. └─vctrs (local) `<fn>`()
21. └─vctrs::vec_default_cast(...)
22. ├─base::withRestarts(...)
23. │ └─base (local) withOneRestart(expr, restarts[[1L]])
24. │ └─base (local) doWithOneRestart(return(expr), restart)
25. └─vctrs::stop_incompatible_cast(...)
26. └─vctrs::stop_incompatible_type(...)
27. └─vctrs:::stop_incompatible(...)
28. └─vctrs:::stop_vctrs(...)
29. └─rlang::abort(message, class = c(class, "vctrs_error"), ..., call = vctrs_error_call(call))
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [95s/108s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(confoundr)
>
> test_check("confoundr")
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testMakeHistoryOne.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryOne.r:50'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:71'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘quickdemo.Rmd’ using rmarkdown
Quitting from lines 38-46 (quickdemo.Rmd)
Error: processing vignette 'quickdemo.Rmd' failed with diagnostics:
ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
--- failed re-building ‘quickdemo.Rmd’
--- re-building ‘selectionbias.Rmd’ using rmarkdown
Quitting from lines 154-164 (selectionbias.Rmd)
Error: processing vignette 'selectionbias.Rmd' failed with diagnostics:
ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1001`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
--- failed re-building ‘selectionbias.Rmd’
SUMMARY: processing the following files failed:
‘quickdemo.Rmd’ ‘selectionbias.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-release-windows-x86_64
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [88s/98s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(confoundr)
>
> test_check("confoundr")
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testMakeHistoryOne.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryOne.r:50'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:71'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.2
Check: tests
Result: ERROR
Running 'testthat.R' [82s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(confoundr)
>
> test_check("confoundr")
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testMakeHistoryOne.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryOne.r:50'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:71'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [73s/84s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(confoundr)
>
> test_check("confoundr")
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testMakeHistoryOne.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryOne.r:50'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:71'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
Error: Test failures
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [76s/88s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(confoundr)
>
> test_check("confoundr")
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testMakeHistoryOne.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryOne.r:50'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:71'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.2
Check: tests
Result: ERROR
Running 'testthat.R' [78s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(confoundr)
>
> test_check("confoundr")
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('testMakeHistoryOne.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryOne.r:50'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name = name.history, his.time = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$his.time,
default = "NA"), "H", lag(.data$exp.value)), his.value = CumPaste(.data$his.lag))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:12'): Formats and Names under No Dropout ───────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
── Error ('testMakeHistoryTwo.r:71'): Formats and Names under Dropout ──────────
<dplyr:::mutate_error/rlang_error/error/condition>
Error in `mutate(., his.name.a = name.history.a, his.name.b = name.history.b,
his.time.a = .data$exp.time, his.time.b = .data$exp.time,
his.lag = if_else(.data$exp.time == first(.data$exp.time,
default = "NA"), "H", lag(paste(.data$exp.value.a, .data$exp.value.b,
sep = ""))), his.value.a = CumPaste(.data$his.lag), his.value.b = paste(CumPaste(.data$his.lag),
.data$exp.value.a, sep = ""))`: ℹ In argument: `his.lag = if_else(...)`.
ℹ In group 1: `ID = 1`.
Caused by error in `nth()`:
! Can't convert `default` <character> to match type of `x` <double>.
[ FAIL 4 | WARN 58 | SKIP 0 | PASS 342 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.2
Check: whether package can be installed
Result: ERROR
install log '' does not exist
Flavor: r-oldrel-windows-ix86+x86_64