Last updated on 2023-03-01 09:53:19 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.14.5 | 10.69 | 71.61 | 82.30 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.14.5 | 9.75 | 54.95 | 64.70 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.14.5 | 104.45 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.14.5 | 1120.57 | ERROR | |||
| r-devel-windows-x86_64 | 0.14.5 | 100.00 | 132.00 | 232.00 | ERROR | |
| r-patched-linux-x86_64 | 0.14.5 | 13.89 | 71.46 | 85.35 | ERROR | |
| r-release-linux-x86_64 | 0.14.5 | 12.95 | 82.19 | 95.14 | ERROR | |
| r-release-macos-arm64 | 0.14.5 | 97.00 | OK | |||
| r-release-macos-x86_64 | 0.14.5 | 126.00 | OK | |||
| r-release-windows-x86_64 | 0.14.5 | 111.00 | 162.00 | 273.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.14.5 | 108.00 | OK | |||
| r-oldrel-macos-x86_64 | 0.14.5 | 162.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 0.14.5 | 26.00 | 154.00 | 180.00 | ERROR |
Version: 0.14.5
Check: dependencies in R code
Result: NOTE
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.14.5
Check: S3 generic/method consistency
Result: WARN
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.14.5
Check: foreign function calls
Result: NOTE
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.14.5
Check: R code for possible problems
Result: NOTE
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.14.5
Check: for missing documentation entries
Result: WARN
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.14.5
Check: for code/documentation mismatches
Result: WARN
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.14.5
Check: Rd \usage sections
Result: NOTE
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
'getOption("repos")' replaces Bioconductor standard repositories, see
'help("repositories", package = "BiocManager")' for details.
Replacement repositories:
CRAN: file:///srv/R/Repositories/CRAN
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.14.5
Check: tests
Result: ERROR
Running ‘winpath.R’ [2s/3s]
Running the tests in ‘tests/winpath.R’ failed.
Complete output:
> library(switchr)
> ## if(getOption("repos")["CRAN"] == "@CRAN@")
> ## chooseCRANmirror(ind=1L)
> graceful_inet(TRUE)
[1] TRUE
> checkUrlRoundtrip = function(pth) {
+ pth = switchr:::normalizePath2(pth)
+ furl = switchr:::makeFileURL(pth)
+ pth2 = switchr:::fileFromFileURL(furl)
+ if(pth != pth2)
+ stop("Round trip result (", pth2, ") does not match original (", pth, ") when creating file URLs")
+ }
>
> ## regression test to ensure that the roundtrip
> ## between path and file url is working properly
> checkUrlRoundtrip(getwd())
> checkUrlRoundtrip(tempdir())
> if(switchr:::isWindows())
+ checkUrlRoundtrip("\\\\localhost\\c$")
>
> ## regreossion test to ensure that package dependencies
> ## are added to the dontunload list when a package
> ## is specified
> bef = switchrDontUnload()
> af = switchrDontUnload("knitr")
> stopifnot(all(c("stringr", "stringi", "magrittr") %in% af))
Error: all(c("stringr", "stringi", "magrittr") %in% af) is not TRUE
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.14.5
Check: tests
Result: ERROR
Running ‘winpath.R’ [1s/3s]
Running the tests in ‘tests/winpath.R’ failed.
Complete output:
> library(switchr)
> ## if(getOption("repos")["CRAN"] == "@CRAN@")
> ## chooseCRANmirror(ind=1L)
> graceful_inet(TRUE)
[1] TRUE
> checkUrlRoundtrip = function(pth) {
+ pth = switchr:::normalizePath2(pth)
+ furl = switchr:::makeFileURL(pth)
+ pth2 = switchr:::fileFromFileURL(furl)
+ if(pth != pth2)
+ stop("Round trip result (", pth2, ") does not match original (", pth, ") when creating file URLs")
+ }
>
> ## regression test to ensure that the roundtrip
> ## between path and file url is working properly
> checkUrlRoundtrip(getwd())
> checkUrlRoundtrip(tempdir())
> if(switchr:::isWindows())
+ checkUrlRoundtrip("\\\\localhost\\c$")
>
> ## regreossion test to ensure that package dependencies
> ## are added to the dontunload list when a package
> ## is specified
> bef = switchrDontUnload()
> af = switchrDontUnload("knitr")
> stopifnot(all(c("stringr", "stringi", "magrittr") %in% af))
Error: all(c("stringr", "stringi", "magrittr") %in% af) is not TRUE
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.14.5
Check: dependencies in R code
Result: NOTE
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.14.5
Check: S3 generic/method consistency
Result: WARN
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
See section ‘Generic functions and methods’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.14.5
Check: foreign function calls
Result: NOTE
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.14.5
Check: R code for possible problems
Result: NOTE
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.14.5
Check: for missing documentation entries
Result: WARN
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.14.5
Check: for code/documentation mismatches
Result: WARN
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.14.5
Check: Rd \usage sections
Result: NOTE
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.14.5
Check: tests
Result: ERROR
Running ‘winpath.R’
Running the tests in ‘tests/winpath.R’ failed.
Complete output:
> library(switchr)
> ## if(getOption("repos")["CRAN"] == "@CRAN@")
> ## chooseCRANmirror(ind=1L)
> graceful_inet(TRUE)
[1] TRUE
> checkUrlRoundtrip = function(pth) {
+ pth = switchr:::normalizePath2(pth)
+ furl = switchr:::makeFileURL(pth)
+ pth2 = switchr:::fileFromFileURL(furl)
+ if(pth != pth2)
+ stop("Round trip result (", pth2, ") does not match original (", pth, ") when creating file URLs")
+ }
>
> ## regression test to ensure that the roundtrip
> ## between path and file url is working properly
> checkUrlRoundtrip(getwd())
> checkUrlRoundtrip(tempdir())
> if(switchr:::isWindows())
+ checkUrlRoundtrip("\\\\localhost\\c$")
>
> ## regreossion test to ensure that package dependencies
> ## are added to the dontunload list when a package
> ## is specified
> bef = switchrDontUnload()
> af = switchrDontUnload("knitr")
> stopifnot(all(c("stringr", "stringi", "magrittr") %in% af))
Error: all(c("stringr", "stringi", "magrittr") %in% af) is not TRUE
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.14.5
Check: tests
Result: ERROR
Running ‘winpath.R’
Running the tests in ‘tests/winpath.R’ failed.
Complete output:
> library(switchr)
> ## if(getOption("repos")["CRAN"] == "@CRAN@")
> ## chooseCRANmirror(ind=1L)
> graceful_inet(TRUE)
[1] TRUE
> checkUrlRoundtrip = function(pth) {
+ pth = switchr:::normalizePath2(pth)
+ furl = switchr:::makeFileURL(pth)
+ pth2 = switchr:::fileFromFileURL(furl)
+ if(pth != pth2)
+ stop("Round trip result (", pth2, ") does not match original (", pth, ") when creating file URLs")
+ }
>
> ## regression test to ensure that the roundtrip
> ## between path and file url is working properly
> checkUrlRoundtrip(getwd())
> checkUrlRoundtrip(tempdir())
> if(switchr:::isWindows())
+ checkUrlRoundtrip("\\\\localhost\\c$")
>
> ## regreossion test to ensure that package dependencies
> ## are added to the dontunload list when a package
> ## is specified
> bef = switchrDontUnload()
> af = switchrDontUnload("knitr")
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: file:///data/gannet/ripley/R
> stopifnot(all(c("stringr", "stringi", "magrittr") %in% af))
Error: all(c("stringr", "stringi", "magrittr") %in% af) is not TRUE
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.14.5
Check: tests
Result: ERROR
Running 'winpath.R' [3s]
Running the tests in 'tests/winpath.R' failed.
Complete output:
> library(switchr)
> ## if(getOption("repos")["CRAN"] == "@CRAN@")
> ## chooseCRANmirror(ind=1L)
> graceful_inet(TRUE)
[1] TRUE
> checkUrlRoundtrip = function(pth) {
+ pth = switchr:::normalizePath2(pth)
+ furl = switchr:::makeFileURL(pth)
+ pth2 = switchr:::fileFromFileURL(furl)
+ if(pth != pth2)
+ stop("Round trip result (", pth2, ") does not match original (", pth, ") when creating file URLs")
+ }
>
> ## regression test to ensure that the roundtrip
> ## between path and file url is working properly
> checkUrlRoundtrip(getwd())
> checkUrlRoundtrip(tempdir())
> if(switchr:::isWindows())
+ checkUrlRoundtrip("\\\\localhost\\c$")
>
> ## regreossion test to ensure that package dependencies
> ## are added to the dontunload list when a package
> ## is specified
> bef = switchrDontUnload()
> af = switchrDontUnload("knitr")
Switchr needs a default CRAN mirror set via R options. Using the cloud mirror. This happens only when no CRAN mirror is selected *and* the BiocInstaller package is not installed.
> stopifnot(all(c("stringr", "stringi", "magrittr") %in% af))
Error: all(c("stringr", "stringi", "magrittr") %in% af) is not TRUE
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.14.5
Check: tests
Result: ERROR
Running ‘winpath.R’ [3s/5s]
Running the tests in ‘tests/winpath.R’ failed.
Complete output:
> library(switchr)
> ## if(getOption("repos")["CRAN"] == "@CRAN@")
> ## chooseCRANmirror(ind=1L)
> graceful_inet(TRUE)
[1] TRUE
> checkUrlRoundtrip = function(pth) {
+ pth = switchr:::normalizePath2(pth)
+ furl = switchr:::makeFileURL(pth)
+ pth2 = switchr:::fileFromFileURL(furl)
+ if(pth != pth2)
+ stop("Round trip result (", pth2, ") does not match original (", pth, ") when creating file URLs")
+ }
>
> ## regression test to ensure that the roundtrip
> ## between path and file url is working properly
> checkUrlRoundtrip(getwd())
> checkUrlRoundtrip(tempdir())
> if(switchr:::isWindows())
+ checkUrlRoundtrip("\\\\localhost\\c$")
>
> ## regreossion test to ensure that package dependencies
> ## are added to the dontunload list when a package
> ## is specified
> bef = switchrDontUnload()
> af = switchrDontUnload("knitr")
Switchr needs a default CRAN mirror set via R options. Using the cloud mirror. This happens only when no CRAN mirror is selected *and* the BiocInstaller package is not installed.
> stopifnot(all(c("stringr", "stringi", "magrittr") %in% af))
Error: all(c("stringr", "stringi", "magrittr") %in% af) is not TRUE
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.14.5
Check: tests
Result: ERROR
Running ‘winpath.R’ [3s/6s]
Running the tests in ‘tests/winpath.R’ failed.
Complete output:
> library(switchr)
> ## if(getOption("repos")["CRAN"] == "@CRAN@")
> ## chooseCRANmirror(ind=1L)
> graceful_inet(TRUE)
[1] TRUE
> checkUrlRoundtrip = function(pth) {
+ pth = switchr:::normalizePath2(pth)
+ furl = switchr:::makeFileURL(pth)
+ pth2 = switchr:::fileFromFileURL(furl)
+ if(pth != pth2)
+ stop("Round trip result (", pth2, ") does not match original (", pth, ") when creating file URLs")
+ }
>
> ## regression test to ensure that the roundtrip
> ## between path and file url is working properly
> checkUrlRoundtrip(getwd())
> checkUrlRoundtrip(tempdir())
> if(switchr:::isWindows())
+ checkUrlRoundtrip("\\\\localhost\\c$")
>
> ## regreossion test to ensure that package dependencies
> ## are added to the dontunload list when a package
> ## is specified
> bef = switchrDontUnload()
> af = switchrDontUnload("knitr")
Switchr needs a default CRAN mirror set via R options. Using the cloud mirror. This happens only when no CRAN mirror is selected *and* the BiocInstaller package is not installed.
> stopifnot(all(c("stringr", "stringi", "magrittr") %in% af))
Error: all(c("stringr", "stringi", "magrittr") %in% af) is not TRUE
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.14.5
Check: tests
Result: ERROR
Running 'winpath.R' [5s]
Running the tests in 'tests/winpath.R' failed.
Complete output:
> library(switchr)
> ## if(getOption("repos")["CRAN"] == "@CRAN@")
> ## chooseCRANmirror(ind=1L)
> graceful_inet(TRUE)
[1] TRUE
> checkUrlRoundtrip = function(pth) {
+ pth = switchr:::normalizePath2(pth)
+ furl = switchr:::makeFileURL(pth)
+ pth2 = switchr:::fileFromFileURL(furl)
+ if(pth != pth2)
+ stop("Round trip result (", pth2, ") does not match original (", pth, ") when creating file URLs")
+ }
>
> ## regression test to ensure that the roundtrip
> ## between path and file url is working properly
> checkUrlRoundtrip(getwd())
> checkUrlRoundtrip(tempdir())
> if(switchr:::isWindows())
+ checkUrlRoundtrip("\\\\localhost\\c$")
>
> ## regreossion test to ensure that package dependencies
> ## are added to the dontunload list when a package
> ## is specified
> bef = switchrDontUnload()
> af = switchrDontUnload("knitr")
Switchr needs a default CRAN mirror set via R options. Using the cloud mirror. This happens only when no CRAN mirror is selected *and* the BiocInstaller package is not installed.
> stopifnot(all(c("stringr", "stringi", "magrittr") %in% af))
Error: all(c("stringr", "stringi", "magrittr") %in% af) is not TRUE
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.14.5
Check: tests
Result: ERROR
Running 'winpath.R' [14s]
Running the tests in 'tests/winpath.R' failed.
Complete output:
> library(switchr)
> ## if(getOption("repos")["CRAN"] == "@CRAN@")
> ## chooseCRANmirror(ind=1L)
> graceful_inet(TRUE)
[1] TRUE
> checkUrlRoundtrip = function(pth) {
+ pth = switchr:::normalizePath2(pth)
+ furl = switchr:::makeFileURL(pth)
+ pth2 = switchr:::fileFromFileURL(furl)
+ if(pth != pth2)
+ stop("Round trip result (", pth2, ") does not match original (", pth, ") when creating file URLs")
+ }
>
> ## regression test to ensure that the roundtrip
> ## between path and file url is working properly
> checkUrlRoundtrip(getwd())
> checkUrlRoundtrip(tempdir())
> if(switchr:::isWindows())
+ checkUrlRoundtrip("\\\\localhost\\c$")
>
> ## regreossion test to ensure that package dependencies
> ## are added to the dontunload list when a package
> ## is specified
> bef = switchrDontUnload()
> af = switchrDontUnload("knitr")
Switchr needs a default CRAN mirror set via R options. Using the cloud mirror. This happens only when no CRAN mirror is selected *and* the BiocInstaller package is not installed.
Warning: unable to access index for repository http://bioconductor.org/packages/3.13/bioc/src/contrib:
cannot open URL 'http://bioconductor.org/packages/3.13/bioc/src/contrib/PACKAGES'
Warning: unable to access index for repository http://bioconductor.org/packages/3.13/data/annotation/src/contrib:
cannot open URL 'http://bioconductor.org/packages/3.13/data/annotation/src/contrib/PACKAGES'
Warning: unable to access index for repository http://bioconductor.org/packages/3.13/data/experiment/src/contrib:
cannot open URL 'http://bioconductor.org/packages/3.13/data/experiment/src/contrib/PACKAGES'
> stopifnot(all(c("stringr", "stringi", "magrittr") %in% af))
Error: all(c("stringr", "stringi", "magrittr") %in% af) is not TRUE
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64