Last updated on 2023-04-01 08:01:06 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.0 | 18.16 | 304.95 | 323.11 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.3.0 | 15.05 | 205.80 | 220.85 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.3.0 | 432.00 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.3.0 | 381.57 | NOTE | |||
| r-devel-windows-x86_64 | 1.3.0 | 200.00 | 222.00 | 422.00 | ERROR | |
| r-patched-linux-x86_64 | 1.3.0 | 12.81 | 255.54 | 268.35 | NOTE | |
| r-release-linux-x86_64 | 1.3.0 | 10.49 | 253.01 | 263.50 | NOTE | |
| r-release-macos-arm64 | 1.3.0 | 111.00 | OK | |||
| r-release-macos-x86_64 | 1.3.0 | 141.00 | OK | |||
| r-release-windows-x86_64 | 1.3.0 | 54.00 | 446.00 | 500.00 | OK | |
| r-oldrel-macos-arm64 | 1.3.0 | 111.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.3.0 | 139.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.3.0 | 37.00 | 343.00 | 380.00 | OK |
Version: 1.3.0
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘RxODE’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.3.0
Check: tests
Result: ERROR
Running 'testthat.R' [73s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> Sys.setenv("R_TESTS" = "")
> library(testthat)
> library(campsis)
Loading required package: campsismod
Attaching package: 'campsismod'
The following object is masked from 'package:utils':
find
The following objects are masked from 'package:base':
Position, as.data.frame, replace, sort, toString, write
Attaching package: 'campsis'
The following object is masked from 'package:stats':
simulate
The following object is masked from 'package:base':
sample
> test_check("campsis")
---:: stderr ::---------------------------------------------
------------------------------------------------------------
---:: stderr ::---------------------------------------------
------------------------------------------------------------
[ FAIL 39 | WARN 82 | SKIP 25 | PASS 307 ]
══ Skipped tests ═══════════════════════════════════════════════════════════════
• empty test (25)
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('testCompilationError.R:19:7'): Incorrect Campsis model does not compile and a clear error message is shown (rxode2/mrgsolve) ──
`simulate(model = model, dataset = ds, dest = destEngine)` threw an error with unexpected message.
Expected match: "The following parameter\\(s\\) are required for solving: BW"
Actual message: "ℹ In index: 1.\nCaused by error:\n! .onLoad failed in loadNamespace() for 'rxode2', details:\n call: NULL\n error: rxode2 compiled with rxode2parse with a different solving structure\ncan try: install.packages('rxode2', type='source')"
Backtrace:
▆
1. ├─testthat::expect_error(...) at testCompilationError.R:19:6
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. ├─campsis::simulate(model = model, dataset = ds, dest = destEngine)
7. ├─campsis::simulate(model = model, dataset = ds, dest = destEngine)
8. │ └─campsis:::simulateDelegate(...)
9. │ └─campsis:::simulateScenarios(...)
10. │ └─purrr::map2_df(...)
11. │ └─purrr::map2(.x, .y, .f, ...)
12. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
13. │ ├─purrr:::with_indexed_errors(...)
14. │ │ └─base::withCallingHandlers(...)
15. │ ├─purrr:::call_with_cleanup(...)
16. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
17. │ └─campsis:::simulateDelegateCore(...)
18. │ ├─campsis::simulate(...)
19. │ └─campsis::simulate(...)
20. ├─base::loadNamespace(x)
21. │ └─base (local) runHook(".onLoad", env, package.lib, package)
22. │ └─base::stop(...)
23. └─base::.handleSimpleError(...)
24. └─purrr (local) h(simpleError(msg, call))
25. └─cli::cli_abort(...)
26. └─rlang::abort(...)
── Error ('testSimulateArguments.R:17:3'): Argument dest works well ────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─model %>% simulate(dataset = dataset) at testSimulateArguments.R:17:2
2. ├─campsis::simulate(., dataset = dataset)
3. ├─campsis::simulate(., dataset = dataset)
4. │ └─campsis:::simulateDelegate(...)
5. │ └─campsis:::simulateScenarios(...)
6. │ └─purrr::map2_df(...)
7. │ └─purrr::map2(.x, .y, .f, ...)
8. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
9. │ ├─purrr:::with_indexed_errors(...)
10. │ │ └─base::withCallingHandlers(...)
11. │ ├─purrr:::call_with_cleanup(...)
12. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
13. │ └─campsis:::simulateDelegateCore(...)
14. │ ├─campsis::simulate(...)
15. │ └─campsis::simulate(...)
16. ├─base::loadNamespace(x)
17. │ └─base (local) runHook(".onLoad", env, package.lib, package)
18. │ └─base::stop(...)
19. └─base::.handleSimpleError(...)
20. └─purrr (local) h(simpleError(msg, call))
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
── Error ('testSimulateArguments.R:29:3'): Auto seed value vs fix seed + default engine ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─model %>% simulate(dataset = dataset, seed = 10) at testSimulateArguments.R:29:2
2. ├─campsis::simulate(., dataset = dataset, seed = 10)
3. ├─campsis::simulate(., dataset = dataset, seed = 10)
4. │ └─campsis:::simulateDelegate(...)
5. │ └─campsis:::simulateScenarios(...)
6. │ └─purrr::map2_df(...)
7. │ └─purrr::map2(.x, .y, .f, ...)
8. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
9. │ ├─purrr:::with_indexed_errors(...)
10. │ │ └─base::withCallingHandlers(...)
11. │ ├─purrr:::call_with_cleanup(...)
12. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
13. │ └─campsis:::simulateDelegateCore(...)
14. │ ├─campsis::simulate(...)
15. │ └─campsis::simulate(...)
16. ├─base::loadNamespace(x)
17. │ └─base (local) runHook(".onLoad", env, package.lib, package)
18. │ └─base::stop(...)
19. └─base::.handleSimpleError(...)
20. └─purrr (local) h(simpleError(msg, call))
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
── Error (???): Simulate a bolus, 2 arms, F1 only in arm1, in dataset (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─model %>% simulate(dataset, dest = destEngine, seed = seed)
2. ├─campsis::simulate(., dataset, dest = destEngine, seed = seed)
3. ├─campsis::simulate(., dataset, dest = destEngine, seed = seed)
4. │ └─campsis:::simulateDelegate(...)
5. │ └─campsis:::simulateScenarios(...)
6. │ └─purrr::map2_df(...)
7. │ └─purrr::map2(.x, .y, .f, ...)
8. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
9. │ ├─purrr:::with_indexed_errors(...)
10. │ │ └─base::withCallingHandlers(...)
11. │ ├─purrr:::call_with_cleanup(...)
12. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
13. │ └─campsis:::simulateDelegateCore(...)
14. │ ├─campsis::simulate(...)
15. │ └─campsis::simulate(...)
16. ├─base::loadNamespace(x)
17. │ └─base (local) runHook(".onLoad", env, package.lib, package)
18. │ └─base::stop(...)
19. └─base::.handleSimpleError(...)
20. └─purrr (local) h(simpleError(msg, call))
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
── Error (???): Simulate a simple bolus with bioavailability, dataset versus model (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─model %>% simulate(dataset, dest = destEngine, seed = seed)
2. ├─campsis::simulate(., dataset, dest = destEngine, seed = seed)
3. ├─campsis::simulate(., dataset, dest = destEngine, seed = seed)
4. │ └─campsis:::simulateDelegate(...)
5. │ └─campsis:::simulateScenarios(...)
6. │ └─purrr::map2_df(...)
7. │ └─purrr::map2(.x, .y, .f, ...)
8. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
9. │ ├─purrr:::with_indexed_errors(...)
10. │ │ └─base::withCallingHandlers(...)
11. │ ├─purrr:::call_with_cleanup(...)
12. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
13. │ └─campsis:::simulateDelegateCore(...)
14. │ ├─campsis::simulate(...)
15. │ └─campsis::simulate(...)
16. ├─base::loadNamespace(x)
17. │ └─base (local) runHook(".onLoad", env, package.lib, package)
18. │ └─base::stop(...)
19. └─base::.handleSimpleError(...)
20. └─purrr (local) h(simpleError(msg, call))
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
── Error (???): Simulate several fixed F's at once (rxode2/mrgsolve) ───────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─model %>% disable("IIV") %>% ...
2. ├─campsis::simulate(., dataset, dest = destEngine, seed = seed)
3. ├─campsis::simulate(., dataset, dest = destEngine, seed = seed)
4. │ └─campsis:::simulateDelegate(...)
5. │ └─campsis:::simulateScenarios(...)
6. │ └─purrr::map2_df(...)
7. │ └─purrr::map2(.x, .y, .f, ...)
8. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
9. │ ├─purrr:::with_indexed_errors(...)
10. │ │ └─base::withCallingHandlers(...)
11. │ ├─purrr:::call_with_cleanup(...)
12. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
13. │ └─campsis:::simulateDelegateCore(...)
14. │ ├─campsis::simulate(...)
15. │ └─campsis::simulate(...)
16. ├─base::loadNamespace(x)
17. │ └─base (local) runHook(".onLoad", env, package.lib, package)
18. │ └─base::stop(...)
19. └─base::.handleSimpleError(...)
20. └─purrr (local) h(simpleError(msg, call))
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
── Error (???): Simulate a bolus (rxode2/mrgsolve) ─────────────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Simulate a bolus, 2 arms (rxode2/mrgsolve) ─────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─model %>% simulate(dataset, dest = destEngine, seed = seed)
2. ├─campsis::simulate(., dataset, dest = destEngine, seed = seed)
3. ├─campsis::simulate(., dataset, dest = destEngine, seed = seed)
4. │ └─campsis:::simulateDelegate(...)
5. │ └─campsis:::simulateScenarios(...)
6. │ └─purrr::map2_df(...)
7. │ └─purrr::map2(.x, .y, .f, ...)
8. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
9. │ ├─purrr:::with_indexed_errors(...)
10. │ │ └─base::withCallingHandlers(...)
11. │ ├─purrr:::call_with_cleanup(...)
12. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
13. │ └─campsis:::simulateDelegateCore(...)
14. │ ├─campsis::simulate(...)
15. │ └─campsis::simulate(...)
16. ├─base::loadNamespace(x)
17. │ └─base (local) runHook(".onLoad", env, package.lib, package)
18. │ └─base::stop(...)
19. └─base::.handleSimpleError(...)
20. └─purrr (local) h(simpleError(msg, call))
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
── Error (???): Simulate a bolus, 2 labelled arms (rxode2/mrgsolve) ────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─model %>% simulate(dataset, dest = destEngine, seed = seed)
2. ├─campsis::simulate(., dataset, dest = destEngine, seed = seed)
3. ├─campsis::simulate(., dataset, dest = destEngine, seed = seed)
4. │ └─campsis:::simulateDelegate(...)
5. │ └─campsis:::simulateScenarios(...)
6. │ └─purrr::map2_df(...)
7. │ └─purrr::map2(.x, .y, .f, ...)
8. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
9. │ ├─purrr:::with_indexed_errors(...)
10. │ │ └─base::withCallingHandlers(...)
11. │ ├─purrr:::call_with_cleanup(...)
12. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
13. │ └─campsis:::simulateDelegateCore(...)
14. │ ├─campsis::simulate(...)
15. │ └─campsis::simulate(...)
16. ├─base::loadNamespace(x)
17. │ └─base (local) runHook(".onLoad", env, package.lib, package)
18. │ └─base::stop(...)
19. └─base::.handleSimpleError(...)
20. └─purrr (local) h(simpleError(msg, call))
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
── Error (???): Bolus and infusion in CMT 1 (rxode2/mrgsolve) ──────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error ('testSimulateDeclare.R:24:7'): Declare argument with mrgsolve ────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─model %>% ... at testSimulateDeclare.R:24:6
2. ├─campsis::simulate(...)
3. ├─campsis::simulate(...)
4. │ └─campsis:::simulateDelegate(...)
5. │ └─campsis:::simulateScenarios(...)
6. │ └─purrr::map2_df(...)
7. │ └─purrr::map2(.x, .y, .f, ...)
8. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
9. │ ├─purrr:::with_indexed_errors(...)
10. │ │ └─base::withCallingHandlers(...)
11. │ ├─purrr:::call_with_cleanup(...)
12. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
13. │ └─campsis:::simulateDelegateCore(...)
14. │ ├─campsis::simulate(...)
15. │ └─campsis::simulate(...)
16. ├─base::loadNamespace(x)
17. │ └─base (local) runHook(".onLoad", env, package.lib, package)
18. │ └─base::stop(...)
19. └─base::.handleSimpleError(...)
20. └─purrr (local) h(simpleError(msg, call))
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
── Error (???): Dose adaptations based on weight work well (rxode2/mrgsolve) ───
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Dose adaptations preserve specified infusion duration (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Dose adaptations preserve specified infusion rate (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Dose adaptations based on weight work well, check argument compartments works as expected (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Dose adaptations can be checked in CAMPSIS output if dosing is TRUE (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Simulate infusion using rate in dataset (rxode2/mrgsolve) ──────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Simulate infusion using rate and lag time in dataset (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Simulate infusion using rate and lag time (parameter distribution) in dataset (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Simulate initial conditions, observations starting at 0 (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Simulate initial conditions, observations starting at 5 (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Simulate a bolus with fixed lag time in dataset (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─model %>% simulate(dataset, dest = destEngine, seed = seed)
2. ├─campsis::simulate(., dataset, dest = destEngine, seed = seed)
3. ├─campsis::simulate(., dataset, dest = destEngine, seed = seed)
4. │ └─campsis:::simulateDelegate(...)
5. │ └─campsis:::simulateScenarios(...)
6. │ └─purrr::map2_df(...)
7. │ └─purrr::map2(.x, .y, .f, ...)
8. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
9. │ ├─purrr:::with_indexed_errors(...)
10. │ │ └─base::withCallingHandlers(...)
11. │ ├─purrr:::call_with_cleanup(...)
12. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
13. │ └─campsis:::simulateDelegateCore(...)
14. │ ├─campsis::simulate(...)
15. │ └─campsis::simulate(...)
16. ├─base::loadNamespace(x)
17. │ └─base (local) runHook(".onLoad", env, package.lib, package)
18. │ └─base::stop(...)
19. └─base::.handleSimpleError(...)
20. └─purrr (local) h(simpleError(msg, call))
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
── Error (???): Simulate a bolus with fixed lag time in model (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─model %>% simulate(dataset, dest = destEngine, seed = seed)
2. ├─campsis::simulate(., dataset, dest = destEngine, seed = seed)
3. ├─campsis::simulate(., dataset, dest = destEngine, seed = seed)
4. │ └─campsis:::simulateDelegate(...)
5. │ └─campsis:::simulateScenarios(...)
6. │ └─purrr::map2_df(...)
7. │ └─purrr::map2(.x, .y, .f, ...)
8. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
9. │ ├─purrr:::with_indexed_errors(...)
10. │ │ └─base::withCallingHandlers(...)
11. │ ├─purrr:::call_with_cleanup(...)
12. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
13. │ └─campsis:::simulateDelegateCore(...)
14. │ ├─campsis::simulate(...)
15. │ └─campsis::simulate(...)
16. ├─base::loadNamespace(x)
17. │ └─base (local) runHook(".onLoad", env, package.lib, package)
18. │ └─base::stop(...)
19. └─base::.handleSimpleError(...)
20. └─purrr (local) h(simpleError(msg, call))
21. └─cli::cli_abort(...)
22. └─rlang::abort(...)
── Error (???): Simulate a minimalist model, no parameters/IIV/error model (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Simulate a 1-cpt model without OMEGA's/SIGMA's - Github issue #8 (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): NULL outvars (rxode2/mrgsolve) ─────────────────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Not NULL outvars (rxode2/mrgsolve) ─────────────────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Not NULL outvars + DROP_OTHERS (rxode2/mrgsolve) ───────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Not NULL outvars from ERROR block + DROP_OTHERS (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Covariates in outvars can be output well (rxode2/mrgsolve) ─────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): ETAs in outvars can be output well (rxode2/mrgsolve) ───────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Test generated RUV is correct (rxode2/mrgsolve) ────────────────
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Simulate scenarios - make few changes on dataset (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Simulate scenarios - make few changes on model (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Weibull model simulation works as expected (rxode2/mrgsolve) ───
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Simulate a bolus using the tabular dataset (rxode2/mrgsolve) ───
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Body weight as a true time varying covariate (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Body weight as a true time varying covariate, 2 arms, individual body weights (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
── Error (???): Simulate a bolus with single observation at time 0 (rxode2/mrgsolve) ──
<purrr_error_indexed/rlang_error/error/condition>
Error in `map2(.x, .y, .f, ...)`: ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
Backtrace:
▆
1. ├─campsis::simulate(...)
2. ├─campsis::simulate(...)
3. │ └─campsis:::simulateDelegate(...)
4. │ └─campsis:::simulateScenarios(...)
5. │ └─purrr::map2_df(...)
6. │ └─purrr::map2(.x, .y, .f, ...)
7. │ └─purrr:::map2_("list", .x, .y, .f, ..., .progress = .progress)
8. │ ├─purrr:::with_indexed_errors(...)
9. │ │ └─base::withCallingHandlers(...)
10. │ ├─purrr:::call_with_cleanup(...)
11. │ └─campsis (local) .f(.x[[i]], .y[[i]], ...)
12. │ └─campsis:::simulateDelegateCore(...)
13. │ ├─campsis::simulate(...)
14. │ └─campsis::simulate(...)
15. ├─base::loadNamespace(x)
16. │ └─base (local) runHook(".onLoad", env, package.lib, package)
17. │ └─base::stop(...)
18. └─base::.handleSimpleError(...)
19. └─purrr (local) h(simpleError(msg, call))
20. └─cli::cli_abort(...)
21. └─rlang::abort(...)
[ FAIL 39 | WARN 82 | SKIP 25 | PASS 307 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.3.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'campsis.Rmd' using rmarkdown
Quitting from lines 43-45 (campsis.Rmd)
Error: processing vignette 'campsis.Rmd' failed with diagnostics:
ℹ In index: 1.
Caused by error:
! .onLoad failed in loadNamespace() for 'rxode2', details:
call: NULL
error: rxode2 compiled with rxode2parse with a different solving structure
can try: install.packages('rxode2', type='source')
--- failed re-building 'campsis.Rmd'
SUMMARY: processing the following file failed:
'campsis.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64