Last updated on 2023-04-04 09:53:32 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.3 | 2.37 | 32.33 | 34.70 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.3 | 1.94 | 24.75 | 26.69 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.3 | 44.34 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.3 | 53.28 | ERROR | |||
| r-devel-windows-x86_64 | 1.0.3 | 14.00 | 767.00 | 781.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.3 | 2.10 | 30.63 | 32.73 | OK | |
| r-release-linux-x86_64 | 1.0.3 | 1.73 | 32.75 | 34.48 | ERROR | |
| r-release-macos-arm64 | 1.0.2 | 316.00 | OK | |||
| r-release-macos-x86_64 | 1.0.3 | 135.00 | OK | |||
| r-release-windows-x86_64 | 1.0.3 | 21.00 | 468.00 | 489.00 | ERROR | |
| r-oldrel-macos-arm64 | 1.0.2 | 337.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.3 | 98.00 | OK | |||
| r-oldrel-windows-ix86+x86_64 | 1.0.3 | 6.00 | 577.00 | 583.00 | ERROR |
Version: 1.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/141s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(queryup)
>
> test_check("queryup")
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
UniProt API request failed :
Client error: (404) Not Found
UniProt API request failed :
Client error: (400) Bad Request
'acc_id' is not a valid search field
UniProt API request failed :
Client error: (400) Bad Request
Invalid fields parameter value 'acc_id'
300 invalid values were found (CON_A2CG63, CON_A2A5R2, CON_A2AVZ9, CON_A2AF47, CON_A4QPC6, CON_E9Q557, CON_A3KG59, CON_B2RQR8, CON_A4Q9E8, CON_D3YZU1, ...) and removed from the query.
Field 'accession_id' with no valid entries has been removed from query.
600 invalid values were found (CON_A2AAJ9, CON_A2RSY6, CON_A9Q751, CON_A6H6E2, CON_E9PVA8, CON_A2A9C3, CON_A2AX52, CON_B1AZP2, CON_B2RUR8, CON_D3Z5S8, ...) and removed from the query.
Field 'accession' with no valid entries has been removed from query.
Field 'accession_id' with no valid entries has been removed from query.
3 invalid values were found (REV_P47941, CON_P22682, P226) and removed from the query.
UniProt API request failed :
Client error: (404) Not Found
Querying the UniProt database...
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[ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-query_uniprot.R:28:5'): Long queries with no columns defined work ──
setequal(res[["Entry"]], ids) (`actual`) not equal to TRUE (`expected`).
`actual`: FALSE
`expected`: TRUE
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [3s/437s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(queryup)
>
> test_check("queryup")
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
UniProt API request failed :
Client error: (404) Not Found
UniProt API request failed :
Client error: (400) Bad Request
'acc_id' is not a valid search field
UniProt API request failed :
Client error: (400) Bad Request
Invalid fields parameter value 'acc_id'
300 invalid values were found (CON_A2CG49, CON_E9PVD3, CON_A2A974, CON_A0A5K7RLP0, CON_A0A1W2P872, CON_E9Q555, CON_A2ASZ8, CON_B2RUP2, CON_A2A863, CON_C0HKE7, ...) and removed from the query.
Field 'accession_id' with no valid entries has been removed from query.
600 invalid values were found (CON_A2ASS6, CON_A2AIW0, CON_A2A825, CON_A3KGV1, CON_A2CG63, CON_A2A5R2, CON_A2AVZ9, CON_A2AF47, CON_A4QPC6, CON_A2AWP0, ...) and removed from the query.
Field 'accession_id' with no valid entries has been removed from query.
Field 'accession' with no valid entries has been removed from query.
3 invalid values were found (P226, REV_P47941, CON_P22682) and removed from the query.
Request failed : Error in curl::curl_fetch_memory(url, handle = handle) :
HTTP/2 stream 41 was not closed cleanly: INTERNAL_ERROR (err 2)
UniProt API request failed :
Client error: (404) Not Found
Querying the UniProt database...
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[ FAIL 2 | WARN 0 | SKIP 0 | PASS 31 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-get_uniprot_data.R:126:3'): Long queries work ──────────────────
Error in `if (res$status == 200) {
expect_true(setequal(res$content$Entry, ids))
} else {
expect_true(length(res$messages) > 0)
}`: argument is of length zero
── Error ('test-query_uniprot.R:14:3'): Long queries work ──────────────────────
Error in `strsplit(res, split = "\n")`: non-character argument
Backtrace:
▆
1. └─queryup::query_uniprot(query) at test-query_uniprot.R:14:2
2. └─queryup::get_uniprot_data(...)
3. └─base::strsplit(res, split = "\n")
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 31 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/155s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(queryup)
>
> test_check("queryup")
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
UniProt API request failed :
Client error: (404) Not Found
UniProt API request failed :
Client error: (400) Bad Request
'acc_id' is not a valid search field
UniProt API request failed :
Client error: (400) Bad Request
Invalid fields parameter value 'acc_id'
300 invalid values were found (CON_A9Q751, CON_B2RW38, CON_B9EKR1, CON_A2A9C3, CON_A2AX52, CON_D3KU66, CON_D3YXK1, CON_D3Z291, CON_B1AZP2, CON_A2AJK6, ...) and removed from the query.
Field 'accession_id' with no valid entries has been removed from query.
600 invalid values were found (CON_A1Y9I9, CON_B6A8R8, CON_B0F2B4, CON_E9PUL5, CON_A2AI05, CON_A2AHL1, CON_B1B0V2, CON_A2ARA8, CON_A2A432, CON_A4Q9F4, ...) and removed from the query.
Field 'accession_id' with no valid entries has been removed from query.
Field 'accession' with no valid entries has been removed from query.
3 invalid values were found (P226, CON_P22682, REV_P47941) and removed from the query.
Request failed : Error in curl::curl_fetch_memory(url, handle = handle) :
HTTP/2 stream 39 was not closed cleanly: INTERNAL_ERROR (err 2)
UniProt API request failed :
Client error: (404) Not Found
Querying the UniProt database...
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[ FAIL 2 | WARN 0 | SKIP 0 | PASS 31 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-get_uniprot_data.R:126:3'): Long queries work ──────────────────
Error in `if (res$status == 200) {
expect_true(setequal(res$content$Entry, ids))
} else {
expect_true(length(res$messages) > 0)
}`: argument is of length zero
── Failure ('test-query_uniprot.R:28:5'): Long queries with no columns defined work ──
setequal(res[["Entry"]], ids) (`actual`) not equal to TRUE (`expected`).
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 31 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.3
Check: tests
Result: ERROR
Running 'testthat.R' [413s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(queryup)
>
> test_check("queryup")
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
UniProt API request failed :
Client error: (404) Not Found
UniProt API request failed :
Client error: (400) Bad Request
'acc_id' is not a valid search field
UniProt API request failed :
Client error: (400) Bad Request
Invalid fields parameter value 'acc_id'
300 invalid values were found (CON_A2AJ76, CON_A4Q9E5, CON_A2AFS3, CON_D0QMC3, CON_D2J0Y4, CON_A2AVJ5, CON_A3KFM7, CON_E9PYH6, CON_A2APB8, CON_A2ALV5, ...) and removed from the query.
Field 'accession_id' with no valid entries has been removed from query.
600 invalid values were found (CON_B2RXZ1, CON_B2RX88, CON_B2RY71, CON_A3KGS3, CON_B2RX14, CON_A3KGF7, CON_E9Q394, CON_A6H639, CON_A2AGL3, CON_A2ARP9, ...) and removed from the query.
Field 'accession_id' with no valid entries has been removed from query.
Field 'accession' with no valid entries has been removed from query.
3 invalid values were found (REV_P47941, CON_P22682, P226) and removed from the query.
UniProt API request failed :
Client error: (404) Not Found
Querying the UniProt database...
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[ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_uniprot_data.R:114:5'): Query with valid and invalid values work ──
setequal(res$content$Entry, valid_ids) is not TRUE
`actual`: FALSE
`expected`: TRUE
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.0.3
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/258s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(queryup)
>
> test_check("queryup")
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
UniProt API request failed :
Client error: (404) Not Found
UniProt API request failed :
Client error: (400) Bad Request
'acc_id' is not a valid search field
UniProt API request failed :
Client error: (400) Bad Request
Invalid fields parameter value 'acc_id'
300 invalid values were found (CON_B0F2B4, CON_B6A8R8, CON_E9PUL5, CON_A1Y9I9, CON_B2RX12, CON_A2AN08, CON_E9Q5K4, CON_B9EJ86, CON_E9PZ19, CON_A0A140LI88, ...) and removed from the query.
Field 'accession_id' with no valid entries has been removed from query.
600 invalid values were found (CON_A2ASZ8, CON_B1AVY7, CON_A2ABV5, CON_E9Q5R7, CON_E9Q4Z2, CON_A2A863, CON_B2RXS4, CON_B2RY04, CON_A7RDN6, CON_A8VU90, ...) and removed from the query.
Field 'accession_id' with no valid entries has been removed from query.
Field 'accession' with no valid entries has been removed from query.
3 invalid values were found (REV_P47941, CON_P22682, P226) and removed from the query.
UniProt API request failed :
Client error: (404) Not Found
Querying the UniProt database...
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[ FAIL 2 | WARN 0 | SKIP 0 | PASS 31 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-query_uniprot.R:14:3'): Long queries work ──────────────────────
Error in `strsplit(res, split = "\n")`: non-character argument
Backtrace:
▆
1. └─queryup::query_uniprot(query) at test-query_uniprot.R:14:2
2. └─queryup::get_uniprot_data(...)
3. └─base::strsplit(res, split = "\n")
── Failure ('test-query_uniprot.R:28:5'): Long queries with no columns defined work ──
setequal(res[["Entry"]], ids) (`actual`) not equal to TRUE (`expected`).
`actual`: FALSE
`expected`: TRUE
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 31 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.0.3
Check: tests
Result: ERROR
Running 'testthat.R' [201s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(queryup)
>
> test_check("queryup")
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
UniProt API request failed :
Client error: (404) Not Found
UniProt API request failed :
Client error: (400) Bad Request
'acc_id' is not a valid search field
UniProt API request failed :
Client error: (400) Bad Request
Invalid fields parameter value 'acc_id'
300 invalid values were found (CON_A1Z198, CON_A2AJN7, CON_A0A1W2P872, CON_A7M7C7, CON_A2AKQ0, CON_A2RST1, CON_D7PDD4, CON_B2RUP2, CON_E0CYR6, CON_A2AIV8, ...) and removed from the query.
Field 'accession_id' with no valid entries has been removed from query.
600 invalid values were found (CON_A1E960, CON_A2A5K6, CON_A2AM29, CON_E9PV87, CON_B2RPY5, CON_B2RY04, CON_A2AT37, CON_E9Q5G7, CON_B2RXS4, CON_C3VPR6, ...) and removed from the query.
Field 'accession_id' with no valid entries has been removed from query.
Field 'accession' with no valid entries has been removed from query.
3 invalid values were found (REV_P47941, CON_P22682, P226) and removed from the query.
Request failed : Error in curl::curl_fetch_memory(url, handle = handle) :
Failure when receiving data from the peer
UniProt API request failed :
Client error: (404) Not Found
Querying the UniProt database...
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[ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-get_uniprot_data.R:126:3'): Long queries work ──────────────────
Error in `if (res$status == 200) {
expect_true(setequal(res$content$Entry, ids))
} else {
expect_true(length(res$messages) > 0)
}`: argument is of length zero
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 32 ]
Error: Test failures
Execution halted
Flavor: r-release-windows-x86_64
Version: 1.0.3
Check: tests
Result: ERROR
Running 'testthat.R' [348s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(queryup)
>
> test_check("queryup")
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Query not supported
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Request failed : Error in handle_url(handle, url, ...) :
Must specify at least one of url or handle
Initiating curl with CURL_SSL_BACKEND: openssl
UniProt API request failed :
Client error: (404) Not Found
UniProt API request failed :
Client error: (400) Bad Request
'acc_id' is not a valid search field
UniProt API request failed :
Client error: (400) Bad Request
Invalid fields parameter value 'acc_id'
300 invalid values were found (CON_B1ATG9, CON_D0QMC3, CON_C0LLJ0, CON_E9PYH6, CON_E9PV87, CON_C0HKE6, CON_E9Q5G7, CON_A2AT37, CON_B2RU80, CON_A2ALV5, ...) and removed from the query.
Field 'accession_id' with no valid entries has been removed from query.
Request failed : Error in curl::curl_fetch_memory(url, handle = handle) :
HTTP/2 stream 0 was not closed cleanly: INTERNAL_ERROR (err 2)
3 invalid values were found (REV_P47941, P226, CON_P22682) and removed from the query.
UniProt API request failed :
Client error: (404) Not Found
Querying the UniProt database...
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Querying the UniProt database...
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[ FAIL 2 | WARN 0 | SKIP 0 | PASS 31 ]
== Failed tests ================================================================
-- Error ('test-get_uniprot_data.R:85:3'): Query with only non valid entries works --
Error: $ operator is invalid for atomic vectors
Backtrace:
x
1. \-queryup::get_uniprot_data(query) at test-get_uniprot_data.R:85:2
2. \-queryup::get_uniprot_data(...)
3. \-base::unlist(content$messages)
-- Error ('test-get_uniprot_data.R:98:3'): Query with non valid entries for multiple query fields works --
Error in `if (res$status == 200) {
expect_equal(length(res$content$Entry), 0)
} else {
expect_true(length(res$messages) > 0)
}`: argument is of length zero
[ FAIL 2 | WARN 0 | SKIP 0 | PASS 31 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-windows-ix86+x86_64