Last updated on 2023-08-10 14:50:48 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 4.0 | 39.41 | 442.64 | 482.05 | OK | |
| r-devel-linux-x86_64-debian-gcc | 4.0 | 28.32 | 310.67 | 338.99 | OK | |
| r-devel-linux-x86_64-fedora-clang | 4.0 | 572.83 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 4.0 | 741.33 | ERROR | |||
| r-devel-windows-x86_64 | 4.0 | 30.00 | 295.00 | 325.00 | OK | |
| r-patched-linux-x86_64 | 4.0 | 40.18 | 414.03 | 454.21 | OK | |
| r-release-linux-x86_64 | 4.0 | 40.69 | 414.37 | 455.06 | OK | |
| r-release-macos-arm64 | 4.0 | 130.00 | OK | |||
| r-release-macos-x86_64 | 4.0 | 252.00 | OK | |||
| r-release-windows-x86_64 | 4.0 | 48.00 | 404.00 | 452.00 | OK | |
| r-oldrel-macos-arm64 | 4.0 | 94.00 | OK | |||
| r-oldrel-macos-x86_64 | 4.0 | 216.00 | OK | |||
| r-oldrel-windows-x86_64 | 4.0 | 48.00 | 389.00 | 437.00 | OK |
Version: 4.0
Check: tests
Result: ERROR
Running ‘test-all.R’ [99s/122s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check("letsR")
Loading required package: letsR
Loading required package: raster
Loading required package: sp
The legacy packages maptools, rgdal, and rgeos, underpinning the sp package,
which was just loaded, will retire in October 2023.
Please refer to R-spatial evolution reports for details, especially
https://r-spatial.org/r/2023/05/15/evolution4.html.
It may be desirable to make the sf package available;
package maintainers should consider adding sf to Suggests:.
The sp package is now running under evolution status 2
(status 2 uses the sf package in place of rgdal)
Loading required package: maps
Please note that 'maptools' will be retired during October 2023,
plan transition at your earliest convenience (see
https://r-spatial.org/r/2023/05/15/evolution4.html and earlier blogs
for guidance);some functionality will be moved to 'sp'.
Checking rgeos availability: TRUE
Please note that rgdal will be retired during October 2023,
plan transition to sf/stars/terra functions using GDAL and PROJ
at your earliest convenience.
See https://r-spatial.org/r/2023/05/15/evolution4.html and https://github.com/r-spatial/evolution
rgdal: version: 1.6-7, (SVN revision 1203)
Geospatial Data Abstraction Library extensions to R successfully loaded
Loaded GDAL runtime: GDAL 3.4.3, released 2022/04/22
Path to GDAL shared files: /usr/local/share/gdal
GDAL binary built with GEOS: TRUE
Loaded PROJ runtime: Rel. 8.2.1, January 1st, 2022, [PJ_VERSION: 821]
Path to PROJ shared files: /data/gannet/ripley/.local/share/proj:/usr/local/share/proj:/usr/local/share/proj
PROJ CDN enabled: TRUE
Linking to sp version:2.0-0
To mute warnings of possible GDAL/OSR exportToProj4() degradation,
use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.
rgeos version: 0.6-4, (SVN revision 699)
GEOS runtime version: 3.10.2-CAPI-1.16.0
Please note that rgeos will be retired during October 2023,
plan transition to sf or terra functions using GEOS at your earliest convenience.
See https://r-spatial.org/r/2023/05/15/evolution4.html for details.
GEOS using OverlayNG
Linking to sp version: 2.0-0
Polygon checking: TRUE
Class: PresenceAbsence
Number of species: 32
Number of cells: 1168
Resolution: 1, 1 (x, y)
Class: PresenceAbsence
_ _
Number of species: 32
Number of cells: 1168
Cells with presence: 1168
Cells without presence: 0
Species without presence: 0
Species with the largest range: Phyllomedusa hypochondrialis
_ _
Grid parameters
Resolution: 1, 1 (x, y)
Extention: -93, -29, -57, 15 (xmin, xmax, ymin, ymax)
Coord. Ref.: +proj=longlat +datum=WGS84[ FAIL 1 | WARN 0 | SKIP 18 | PASS 191 ]
══ Skipped tests (18) ══════════════════════════════════════════════════════════
• On CRAN (16): 'test-lets_presab.R:6:3', 'test-lets_presab.R:20:3',
'test-lets_presab.R:39:3', 'test-lets_presab.R:56:3',
'test-lets_presab.R:72:3', 'test-lets_presab.R:94:3',
'test-lets_presab.R:114:3', 'test-lets_presab.R:135:3',
'test-lets_presab_birds.R:7:3', 'test-lets_presab_birds.R:21:3',
'test-lets_presab_birds.R:37:3', 'test-lets_presab_birds.R:59:3',
'test-lets_presab_birds.R:73:3', 'test-lets_presab_birds.R:90:3',
'test-lets_presab_birds.R:104:3', 'test-lets_presab_birds.R:125:3'
• empty test (2): 'test-printplotsummary.R:6:1', 'test-printplotsummary.R:15:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-lets_addvar.R:37:3'): lets.addvar works fine, multiple rasters ──
Error in `lets.addvar(PAM, tempstack)`: The PAM object and the variable (raster)
should be in the same projection
Backtrace:
▆
1. └─letsR::lets.addvar(PAM, tempstack) at test-lets_addvar.R:37:2
[ FAIL 1 | WARN 0 | SKIP 18 | PASS 191 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc