CRAN Package Check Results for Package prettyglm

Last updated on 2023-08-10 09:52:38 CEST.

Flavor	Version	Tinstall	Tcheck	Ttotal	Status	Flags
r-devel-linux-x86_64-debian-clang	1.0.0	11.39	86.89	98.28	ERROR
r-devel-linux-x86_64-debian-gcc	1.0.0	9.49	64.65	74.14	ERROR
r-devel-linux-x86_64-fedora-clang	1.0.0			126.95	ERROR
r-devel-linux-x86_64-fedora-gcc	1.0.0			163.39	ERROR
r-devel-windows-x86_64	1.0.0	12.00	83.00	95.00	ERROR
r-patched-linux-x86_64	1.0.0	11.26	80.89	92.15	ERROR
r-release-linux-x86_64	1.0.0	8.47	84.15	92.62	ERROR
r-release-macos-arm64	1.0.0			47.00	OK
r-release-macos-x86_64	1.0.0			66.00	NOTE
r-release-windows-x86_64	1.0.0	12.00	98.00	110.00	ERROR
r-oldrel-macos-arm64	1.0.0			41.00	OK
r-oldrel-macos-x86_64	1.0.0			57.00	OK
r-oldrel-windows-x86_64	1.0.0	16.00	102.00	118.00	ERROR

Check Details

Version: 1.0.0
Check: examples
Result: ERROR
    Running examples in ‘prettyglm-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: pretty_coefficients
    > ### Title: pretty_coefficients
    > ### Aliases: pretty_coefficients
    >
    > ### ** Examples
    >
    >
    > library(dplyr)
    
    Attaching package: ‘dplyr’
    
    The following objects are masked from ‘package:stats’:
    
     filter, lag
    
    The following objects are masked from ‘package:base’:
    
     intersect, setdiff, setequal, union
    
    > library(prettyglm)
    > data('titanic')
    > columns_to_factor <- c('Pclass',
    + 'Sex',
    + 'Cabin',
    + 'Embarked',
    + 'Cabintype',
    + 'Survived')
    > meanage <- base::mean(titanic$Age, na.rm=TRUE)
    >
    > titanic <- titanic %>%
    + dplyr::mutate_at(columns_to_factor, list(~factor(.))) %>%
    + dplyr::mutate(Age =base::ifelse(is.na(Age)==TRUE,meanage,Age)) %>%
    + dplyr::mutate(Age_0_25 = prettyglm::splineit(Age,0,25),
    + Age_25_50 = prettyglm::splineit(Age,25,50),
    + Age_50_120 = prettyglm::splineit(Age,50,120)) %>%
    + dplyr::mutate(Fare_0_250 = prettyglm::splineit(Fare,0,250),
    + Fare_250_600 = prettyglm::splineit(Fare,250,600))
    >
    > # A simple example
    > survival_model <- stats::glm(Survived ~
    + Pclass +
    + Sex +
    + Age +
    + Fare +
    + Embarked +
    + SibSp +
    + Parch +
    + Cabintype,
    + data = titanic,
    + family = binomial(link = 'logit'))
    > pretty_coefficients(survival_model)
    <table class="table" style="margin-left: auto; margin-right: auto;border-bottom: 0;">
     <thead>
     <tr>
     <th style="text-align:left;"> Variable </th>
     <th style="text-align:left;"> Level </th>
     <th style="text-align:left;"> Importance </th>
     <th style="text-align:right;"> Estimate </th>
     <th style="text-align:right;"> Std.error </th>
     <th style="text-align:right;"> P.Value </th>
     </tr>
     </thead>
    <tbody>
     <tr>
     <td style="text-align:left;"> (Intercept) </td>
     <td style="text-align:left;"> (Intercept) </td>
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    </td>
     <td style="text-align:right;"> 4.3534863 </td>
     <td style="text-align:right;"> 0.7100919 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 1 </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 2 </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.2405205 </td>
     <td style="text-align:right;"> 0.4370773 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.58212</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 3 </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -1.3950560 </td>
     <td style="text-align:right;"> 0.4373004 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.00142</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Sex </td>
     <td style="text-align:left;"> female </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Sex </td>
     <td style="text-align:left;"> male </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -2.7372606 </td>
     <td style="text-align:right;"> 0.2062126 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Age </td>
     <td style="text-align:left;"> Age </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.0412313 </td>
     <td style="text-align:right;"> 0.0081457 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Fare </td>
     <td style="text-align:left;"> Fare </td>
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    </td>
     <td style="text-align:right;"> 0.0029675 </td>
     <td style="text-align:right;"> 0.0027001 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.27175</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> C </td>
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> Q </td>
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    </td>
     <td style="text-align:right;"> -0.0783606 </td>
     <td style="text-align:right;"> 0.3862992 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.83925</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> S </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.5118226 </td>
     <td style="text-align:right;"> 0.2463878 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.03777</span> </td>
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     <tr>
     <td style="text-align:left;"> SibSp </td>
     <td style="text-align:left;"> SibSp </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.3251949 </td>
     <td style="text-align:right;"> 0.1112076 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.00345</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Parch </td>
     <td style="text-align:left;"> Parch </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.1115613 </td>
     <td style="text-align:right;"> 0.1208131 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.35579</span> </td>
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     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> A </td>
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     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> B </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.0252365 </td>
     <td style="text-align:right;"> 0.7183014 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.97197</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> C </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.5019796 </td>
     <td style="text-align:right;"> 0.6626204 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.44871</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> D </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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     <td style="text-align:right;"> 0.4769107 </td>
     <td style="text-align:right;"> 0.7344476 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.51611</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> E </td>
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     <td style="text-align:right;"> 0.9884183 </td>
     <td style="text-align:right;"> 0.7381810 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.18057</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> F </td>
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     <td style="text-align:right;"> 0.2948757 </td>
     <td style="text-align:right;"> 0.9803112 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.76357</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> G </td>
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    </td>
     <td style="text-align:right;"> -1.5773340 </td>
     <td style="text-align:right;"> 1.2574952 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.20972</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> Missing </td>
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    </td>
     <td style="text-align:right;"> -0.9127259 </td>
     <td style="text-align:right;"> 0.6723476 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.17462</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> T </td>
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    </td>
     <td style="text-align:right;"> -12.9204077 </td>
     <td style="text-align:right;"> 535.4114701 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.98075</span> </td>
     </tr>
    </tbody>
    <tfoot><tr><td style="padding: 0; " colspan="100%">
    <span style="font-style: italic;text-decoration: underline;">Goodness-of-Fit:</span>  AIC: 800.4 , Devience : 764.4 , Null Devience: 1182.8</td></tr></tfoot>
    </table>>
    > # A more complicated example with a spline and different importance method
    > survival_model3 <- stats::glm(Survived ~
    + Pclass +
    + Age_0_25 +
    + Age_25_50 +
    + Age_50_120 +
    + Sex:Fare_0_250 +
    + Sex:Fare_250_600 +
    + Embarked +
    + SibSp +
    + Parch +
    + Cabintype,
    + data = titanic,
    + family = binomial(link = 'logit'))
    > pretty_coefficients(survival_model3,
    + relativity_transform = 'exp(estimate)-1',
    + spline_seperator = '_',
    + vimethod = 'permute',
    + target = 'Survived',
    + metric = 'auc',
    + pred_wrapper = predict.glm,
    + reference_class = 0)
    Error: Training data cannot be extracted from fitted model object. Please supply the raw training data using the `train` argument.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.0.0
Check: examples
Result: ERROR
    Running examples in ‘prettyglm-Ex.R’ failed
    The error most likely occurred in:
    
    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: pretty_coefficients
    > ### Title: pretty_coefficients
    > ### Aliases: pretty_coefficients
    >
    > ### ** Examples
    >
    >
    > library(dplyr)
    
    Attaching package: ‘dplyr’
    
    The following objects are masked from ‘package:stats’:
    
     filter, lag
    
    The following objects are masked from ‘package:base’:
    
     intersect, setdiff, setequal, union
    
    > library(prettyglm)
    > data('titanic')
    > columns_to_factor <- c('Pclass',
    + 'Sex',
    + 'Cabin',
    + 'Embarked',
    + 'Cabintype',
    + 'Survived')
    > meanage <- base::mean(titanic$Age, na.rm=TRUE)
    >
    > titanic <- titanic %>%
    + dplyr::mutate_at(columns_to_factor, list(~factor(.))) %>%
    + dplyr::mutate(Age =base::ifelse(is.na(Age)==TRUE,meanage,Age)) %>%
    + dplyr::mutate(Age_0_25 = prettyglm::splineit(Age,0,25),
    + Age_25_50 = prettyglm::splineit(Age,25,50),
    + Age_50_120 = prettyglm::splineit(Age,50,120)) %>%
    + dplyr::mutate(Fare_0_250 = prettyglm::splineit(Fare,0,250),
    + Fare_250_600 = prettyglm::splineit(Fare,250,600))
    >
    > # A simple example
    > survival_model <- stats::glm(Survived ~
    + Pclass +
    + Sex +
    + Age +
    + Fare +
    + Embarked +
    + SibSp +
    + Parch +
    + Cabintype,
    + data = titanic,
    + family = binomial(link = 'logit'))
    > pretty_coefficients(survival_model)
    <table class="table" style="margin-left: auto; margin-right: auto;border-bottom: 0;">
     <thead>
     <tr>
     <th style="text-align:left;"> Variable </th>
     <th style="text-align:left;"> Level </th>
     <th style="text-align:left;"> Importance </th>
     <th style="text-align:right;"> Estimate </th>
     <th style="text-align:right;"> Std.error </th>
     <th style="text-align:right;"> P.Value </th>
     </tr>
     </thead>
    <tbody>
     <tr>
     <td style="text-align:left;"> (Intercept) </td>
     <td style="text-align:left;"> (Intercept) </td>
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    </td>
     <td style="text-align:right;"> 4.3534863 </td>
     <td style="text-align:right;"> 0.7100919 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 1 </td>
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 2 </td>
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    </td>
     <td style="text-align:right;"> -0.2405205 </td>
     <td style="text-align:right;"> 0.4370773 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.58212</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 3 </td>
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    </td>
     <td style="text-align:right;"> -1.3950560 </td>
     <td style="text-align:right;"> 0.4373004 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.00142</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Sex </td>
     <td style="text-align:left;"> female </td>
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     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Sex </td>
     <td style="text-align:left;"> male </td>
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    </td>
     <td style="text-align:right;"> -2.7372606 </td>
     <td style="text-align:right;"> 0.2062126 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Age </td>
     <td style="text-align:left;"> Age </td>
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     <td style="text-align:right;"> -0.0412313 </td>
     <td style="text-align:right;"> 0.0081457 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Fare </td>
     <td style="text-align:left;"> Fare </td>
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    </td>
     <td style="text-align:right;"> 0.0029675 </td>
     <td style="text-align:right;"> 0.0027001 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.27175</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> C </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> Q </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.0783606 </td>
     <td style="text-align:right;"> 0.3862992 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.83925</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> S </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.5118226 </td>
     <td style="text-align:right;"> 0.2463878 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.03777</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> SibSp </td>
     <td style="text-align:left;"> SibSp </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.3251949 </td>
     <td style="text-align:right;"> 0.1112076 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.00345</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Parch </td>
     <td style="text-align:left;"> Parch </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.1115613 </td>
     <td style="text-align:right;"> 0.1208131 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.35579</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> A </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> B </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.0252365 </td>
     <td style="text-align:right;"> 0.7183014 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.97197</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> C </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.5019796 </td>
     <td style="text-align:right;"> 0.6626204 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.44871</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> D </td>
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    </td>
     <td style="text-align:right;"> 0.4769107 </td>
     <td style="text-align:right;"> 0.7344476 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.51611</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> E </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> 0.9884183 </td>
     <td style="text-align:right;"> 0.7381810 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.18057</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> F </td>
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    </td>
     <td style="text-align:right;"> 0.2948757 </td>
     <td style="text-align:right;"> 0.9803112 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.76357</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> G </td>
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    </td>
     <td style="text-align:right;"> -1.5773340 </td>
     <td style="text-align:right;"> 1.2574952 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.20972</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> Missing </td>
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    </td>
     <td style="text-align:right;"> -0.9127259 </td>
     <td style="text-align:right;"> 0.6723476 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.17462</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> T </td>
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    </td>
     <td style="text-align:right;"> -12.9204077 </td>
     <td style="text-align:right;"> 535.4114701 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.98075</span> </td>
     </tr>
    </tbody>
    <tfoot><tr><td style="padding: 0; " colspan="100%">
    <span style="font-style: italic;text-decoration: underline;">Goodness-of-Fit:</span>  AIC: 800.4 , Devience : 764.4 , Null Devience: 1182.8</td></tr></tfoot>
    </table>>
    > # A more complicated example with a spline and different importance method
    > survival_model3 <- stats::glm(Survived ~
    + Pclass +
    + Age_0_25 +
    + Age_25_50 +
    + Age_50_120 +
    + Sex:Fare_0_250 +
    + Sex:Fare_250_600 +
    + Embarked +
    + SibSp +
    + Parch +
    + Cabintype,
    + data = titanic,
    + family = binomial(link = 'logit'))
    > pretty_coefficients(survival_model3,
    + relativity_transform = 'exp(estimate)-1',
    + spline_seperator = '_',
    + vimethod = 'permute',
    + target = 'Survived',
    + metric = 'auc',
    + pred_wrapper = predict.glm,
    + reference_class = 0)
    Error: Training data cannot be extracted from fitted model object. Please supply the raw training data using the `train` argument.
    Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.0.0
Check: Rd cross-references
Result: NOTE
    Undeclared package ‘parsnip’ in Rd xrefs
Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.0.0
Check: examples
Result: ERROR
    Running examples in ‘prettyglm-Ex.R’ failed
    The error most likely occurred in:
    
    > ### Name: pretty_coefficients
    > ### Title: pretty_coefficients
    > ### Aliases: pretty_coefficients
    >
    > ### ** Examples
    >
    >
    > library(dplyr)
    
    Attaching package: ‘dplyr’
    
    The following objects are masked from ‘package:stats’:
    
     filter, lag
    
    The following objects are masked from ‘package:base’:
    
     intersect, setdiff, setequal, union
    
    > library(prettyglm)
    > data('titanic')
    > columns_to_factor <- c('Pclass',
    + 'Sex',
    + 'Cabin',
    + 'Embarked',
    + 'Cabintype',
    + 'Survived')
    > meanage <- base::mean(titanic$Age, na.rm=TRUE)
    >
    > titanic <- titanic %>%
    + dplyr::mutate_at(columns_to_factor, list(~factor(.))) %>%
    + dplyr::mutate(Age =base::ifelse(is.na(Age)==TRUE,meanage,Age)) %>%
    + dplyr::mutate(Age_0_25 = prettyglm::splineit(Age,0,25),
    + Age_25_50 = prettyglm::splineit(Age,25,50),
    + Age_50_120 = prettyglm::splineit(Age,50,120)) %>%
    + dplyr::mutate(Fare_0_250 = prettyglm::splineit(Fare,0,250),
    + Fare_250_600 = prettyglm::splineit(Fare,250,600))
    >
    > # A simple example
    > survival_model <- stats::glm(Survived ~
    + Pclass +
    + Sex +
    + Age +
    + Fare +
    + Embarked +
    + SibSp +
    + Parch +
    + Cabintype,
    + data = titanic,
    + family = binomial(link = 'logit'))
    > pretty_coefficients(survival_model)
    <table class="table" style="margin-left: auto; margin-right: auto;border-bottom: 0;">
     <thead>
     <tr>
     <th style="text-align:left;"> Variable </th>
     <th style="text-align:left;"> Level </th>
     <th style="text-align:left;"> Importance </th>
     <th style="text-align:right;"> Estimate </th>
     <th style="text-align:right;"> Std.error </th>
     <th style="text-align:right;"> P.Value </th>
     </tr>
     </thead>
    <tbody>
     <tr>
     <td style="text-align:left;"> (Intercept) </td>
     <td style="text-align:left;"> (Intercept) </td>
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    </td>
     <td style="text-align:right;"> 4.3534863 </td>
     <td style="text-align:right;"> 0.7100919 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 1 </td>
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 2 </td>
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    </td>
     <td style="text-align:right;"> -0.2405205 </td>
     <td style="text-align:right;"> 0.4370773 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.58212</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 3 </td>
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    </td>
     <td style="text-align:right;"> -1.3950560 </td>
     <td style="text-align:right;"> 0.4373004 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.00142</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Sex </td>
     <td style="text-align:left;"> female </td>
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Sex </td>
     <td style="text-align:left;"> male </td>
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    </td>
     <td style="text-align:right;"> -2.7372606 </td>
     <td style="text-align:right;"> 0.2062126 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Age </td>
     <td style="text-align:left;"> Age </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.0412313 </td>
     <td style="text-align:right;"> 0.0081457 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Fare </td>
     <td style="text-align:left;"> Fare </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> 0.0029675 </td>
     <td style="text-align:right;"> 0.0027001 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.27175</span> </td>
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     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> C </td>
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     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
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     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> Q </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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     <td style="text-align:right;"> -0.0783606 </td>
     <td style="text-align:right;"> 0.3862992 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.83925</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> S </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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     <td style="text-align:right;"> -0.5118226 </td>
     <td style="text-align:right;"> 0.2463878 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.03777</span> </td>
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     <tr>
     <td style="text-align:left;"> SibSp </td>
     <td style="text-align:left;"> SibSp </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.3251949 </td>
     <td style="text-align:right;"> 0.1112076 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.00345</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Parch </td>
     <td style="text-align:left;"> Parch </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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     <td style="text-align:right;"> -0.1115613 </td>
     <td style="text-align:right;"> 0.1208131 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.35579</span> </td>
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     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> A </td>
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     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
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     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> B </td>
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     <td style="text-align:right;"> -0.0252365 </td>
     <td style="text-align:right;"> 0.7183014 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.97197</span> </td>
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     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> C </td>
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     <td style="text-align:right;"> -0.5019796 </td>
     <td style="text-align:right;"> 0.6626204 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.44871</span> </td>
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     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> D </td>
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    </td>
     <td style="text-align:right;"> 0.4769107 </td>
     <td style="text-align:right;"> 0.7344476 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.51611</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> E </td>
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    </td>
     <td style="text-align:right;"> 0.9884183 </td>
     <td style="text-align:right;"> 0.7381810 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.18057</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> F </td>
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    </td>
     <td style="text-align:right;"> 0.2948757 </td>
     <td style="text-align:right;"> 0.9803112 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.76357</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> G </td>
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    </td>
     <td style="text-align:right;"> -1.5773340 </td>
     <td style="text-align:right;"> 1.2574952 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.20972</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> Missing </td>
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    </td>
     <td style="text-align:right;"> -0.9127259 </td>
     <td style="text-align:right;"> 0.6723476 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.17462</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> T </td>
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    </td>
     <td style="text-align:right;"> -12.9204077 </td>
     <td style="text-align:right;"> 535.4114701 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.98075</span> </td>
     </tr>
    </tbody>
    <tfoot><tr><td style="padding: 0; " colspan="100%">
    <span style="font-style: italic;text-decoration: underline;">Goodness-of-Fit:</span>  AIC: 800.4 , Devience : 764.4 , Null Devience: 1182.8</td></tr></tfoot>
    </table>>
    > # A more complicated example with a spline and different importance method
    > survival_model3 <- stats::glm(Survived ~
    + Pclass +
    + Age_0_25 +
    + Age_25_50 +
    + Age_50_120 +
    + Sex:Fare_0_250 +
    + Sex:Fare_250_600 +
    + Embarked +
    + SibSp +
    + Parch +
    + Cabintype,
    + data = titanic,
    + family = binomial(link = 'logit'))
    > pretty_coefficients(survival_model3,
    + relativity_transform = 'exp(estimate)-1',
    + spline_seperator = '_',
    + vimethod = 'permute',
    + target = 'Survived',
    + metric = 'auc',
    + pred_wrapper = predict.glm,
    + reference_class = 0)
    Error: Training data cannot be extracted from fitted model object. Please supply the raw training data using the `train` argument.
    Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 1.0.0
Check: examples
Result: ERROR
    Running examples in 'prettyglm-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: pretty_coefficients
    > ### Title: pretty_coefficients
    > ### Aliases: pretty_coefficients
    >
    > ### ** Examples
    >
    >
    > library(dplyr)
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    > library(prettyglm)
    > data('titanic')
    > columns_to_factor <- c('Pclass',
    + 'Sex',
    + 'Cabin',
    + 'Embarked',
    + 'Cabintype',
    + 'Survived')
    > meanage <- base::mean(titanic$Age, na.rm=TRUE)
    >
    > titanic <- titanic %>%
    + dplyr::mutate_at(columns_to_factor, list(~factor(.))) %>%
    + dplyr::mutate(Age =base::ifelse(is.na(Age)==TRUE,meanage,Age)) %>%
    + dplyr::mutate(Age_0_25 = prettyglm::splineit(Age,0,25),
    + Age_25_50 = prettyglm::splineit(Age,25,50),
    + Age_50_120 = prettyglm::splineit(Age,50,120)) %>%
    + dplyr::mutate(Fare_0_250 = prettyglm::splineit(Fare,0,250),
    + Fare_250_600 = prettyglm::splineit(Fare,250,600))
    >
    > # A simple example
    > survival_model <- stats::glm(Survived ~
    + Pclass +
    + Sex +
    + Age +
    + Fare +
    + Embarked +
    + SibSp +
    + Parch +
    + Cabintype,
    + data = titanic,
    + family = binomial(link = 'logit'))
    > pretty_coefficients(survival_model)
    <table class="table" style="margin-left: auto; margin-right: auto;border-bottom: 0;">
     <thead>
     <tr>
     <th style="text-align:left;"> Variable </th>
     <th style="text-align:left;"> Level </th>
     <th style="text-align:left;"> Importance </th>
     <th style="text-align:right;"> Estimate </th>
     <th style="text-align:right;"> Std.error </th>
     <th style="text-align:right;"> P.Value </th>
     </tr>
     </thead>
    <tbody>
     <tr>
     <td style="text-align:left;"> (Intercept) </td>
     <td style="text-align:left;"> (Intercept) </td>
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    </td>
     <td style="text-align:right;"> 4.3534863 </td>
     <td style="text-align:right;"> 0.7100919 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 1 </td>
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 2 </td>
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    </td>
     <td style="text-align:right;"> -0.2405205 </td>
     <td style="text-align:right;"> 0.4370773 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.58212</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 3 </td>
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    </td>
     <td style="text-align:right;"> -1.3950560 </td>
     <td style="text-align:right;"> 0.4373004 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.00142</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Sex </td>
     <td style="text-align:left;"> female </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Sex </td>
     <td style="text-align:left;"> male </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -2.7372606 </td>
     <td style="text-align:right;"> 0.2062126 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Age </td>
     <td style="text-align:left;"> Age </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.0412313 </td>
     <td style="text-align:right;"> 0.0081457 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Fare </td>
     <td style="text-align:left;"> Fare </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> 0.0029675 </td>
     <td style="text-align:right;"> 0.0027001 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.27175</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> C </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> Q </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.0783606 </td>
     <td style="text-align:right;"> 0.3862992 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.83925</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> S </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.5118226 </td>
     <td style="text-align:right;"> 0.2463878 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.03777</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> SibSp </td>
     <td style="text-align:left;"> SibSp </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.3251949 </td>
     <td style="text-align:right;"> 0.1112076 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.00345</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Parch </td>
     <td style="text-align:left;"> Parch </td>
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    </td>
     <td style="text-align:right;"> -0.1115613 </td>
     <td style="text-align:right;"> 0.1208131 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.35579</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> A </td>
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> B </td>
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     <td style="text-align:right;"> -0.0252365 </td>
     <td style="text-align:right;"> 0.7183014 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.97197</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> C </td>
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     <td style="text-align:right;"> -0.5019796 </td>
     <td style="text-align:right;"> 0.6626204 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.44871</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> D </td>
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     <td style="text-align:right;"> 0.4769107 </td>
     <td style="text-align:right;"> 0.7344476 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.51611</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> E </td>
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     <td style="text-align:right;"> 0.9884183 </td>
     <td style="text-align:right;"> 0.7381810 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.18057</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> F </td>
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    </td>
     <td style="text-align:right;"> 0.2948757 </td>
     <td style="text-align:right;"> 0.9803112 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.76357</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> G </td>
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    </td>
     <td style="text-align:right;"> -1.5773340 </td>
     <td style="text-align:right;"> 1.2574952 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.20972</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> Missing </td>
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    </td>
     <td style="text-align:right;"> -0.9127259 </td>
     <td style="text-align:right;"> 0.6723476 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.17462</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> T </td>
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    </td>
     <td style="text-align:right;"> -12.9204077 </td>
     <td style="text-align:right;"> 535.4114701 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.98075</span> </td>
     </tr>
    </tbody>
    <tfoot><tr><td style="padding: 0; " colspan="100%">
    <span style="font-style: italic;text-decoration: underline;">Goodness-of-Fit:</span>  AIC: 800.4 , Devience : 764.4 , Null Devience: 1182.8</td></tr></tfoot>
    </table>>
    > # A more complicated example with a spline and different importance method
    > survival_model3 <- stats::glm(Survived ~
    + Pclass +
    + Age_0_25 +
    + Age_25_50 +
    + Age_50_120 +
    + Sex:Fare_0_250 +
    + Sex:Fare_250_600 +
    + Embarked +
    + SibSp +
    + Parch +
    + Cabintype,
    + data = titanic,
    + family = binomial(link = 'logit'))
    > pretty_coefficients(survival_model3,
    + relativity_transform = 'exp(estimate)-1',
    + spline_seperator = '_',
    + vimethod = 'permute',
    + target = 'Survived',
    + metric = 'auc',
    + pred_wrapper = predict.glm,
    + reference_class = 0)
    Error: Training data cannot be extracted from fitted model object. Please supply the raw training data using the `train` argument.
    Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.0.0
Check: Rd cross-references
Result: NOTE
    Package unavailable to check Rd xrefs: ‘parsnip’
Flavor: r-release-macos-x86_64

Version: 1.0.0
Check: examples
Result: ERROR
    Running examples in 'prettyglm-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: pretty_coefficients
    > ### Title: pretty_coefficients
    > ### Aliases: pretty_coefficients
    >
    > ### ** Examples
    >
    >
    > library(dplyr)
    
    Attaching package: 'dplyr'
    
    The following objects are masked from 'package:stats':
    
     filter, lag
    
    The following objects are masked from 'package:base':
    
     intersect, setdiff, setequal, union
    
    > library(prettyglm)
    > data('titanic')
    > columns_to_factor <- c('Pclass',
    + 'Sex',
    + 'Cabin',
    + 'Embarked',
    + 'Cabintype',
    + 'Survived')
    > meanage <- base::mean(titanic$Age, na.rm=TRUE)
    >
    > titanic <- titanic %>%
    + dplyr::mutate_at(columns_to_factor, list(~factor(.))) %>%
    + dplyr::mutate(Age =base::ifelse(is.na(Age)==TRUE,meanage,Age)) %>%
    + dplyr::mutate(Age_0_25 = prettyglm::splineit(Age,0,25),
    + Age_25_50 = prettyglm::splineit(Age,25,50),
    + Age_50_120 = prettyglm::splineit(Age,50,120)) %>%
    + dplyr::mutate(Fare_0_250 = prettyglm::splineit(Fare,0,250),
    + Fare_250_600 = prettyglm::splineit(Fare,250,600))
    >
    > # A simple example
    > survival_model <- stats::glm(Survived ~
    + Pclass +
    + Sex +
    + Age +
    + Fare +
    + Embarked +
    + SibSp +
    + Parch +
    + Cabintype,
    + data = titanic,
    + family = binomial(link = 'logit'))
    > pretty_coefficients(survival_model)
    <table class="table" style="margin-left: auto; margin-right: auto;border-bottom: 0;">
     <thead>
     <tr>
     <th style="text-align:left;"> Variable </th>
     <th style="text-align:left;"> Level </th>
     <th style="text-align:left;"> Importance </th>
     <th style="text-align:right;"> Estimate </th>
     <th style="text-align:right;"> Std.error </th>
     <th style="text-align:right;"> P.Value </th>
     </tr>
     </thead>
    <tbody>
     <tr>
     <td style="text-align:left;"> (Intercept) </td>
     <td style="text-align:left;"> (Intercept) </td>
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    </td>
     <td style="text-align:right;"> 4.3534863 </td>
     <td style="text-align:right;"> 0.7100919 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 1 </td>
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 2 </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.2405205 </td>
     <td style="text-align:right;"> 0.4370773 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.58212</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Pclass </td>
     <td style="text-align:left;"> 3 </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -1.3950560 </td>
     <td style="text-align:right;"> 0.4373004 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.00142</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Sex </td>
     <td style="text-align:left;"> female </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Sex </td>
     <td style="text-align:left;"> male </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -2.7372606 </td>
     <td style="text-align:right;"> 0.2062126 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Age </td>
     <td style="text-align:left;"> Age </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.0412313 </td>
     <td style="text-align:right;"> 0.0081457 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Fare </td>
     <td style="text-align:left;"> Fare </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> 0.0029675 </td>
     <td style="text-align:right;"> 0.0027001 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.27175</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> C </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">NA</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> Q </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.0783606 </td>
     <td style="text-align:right;"> 0.3862992 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.83925</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Embarked </td>
     <td style="text-align:left;"> S </td>
     <td style="text-align:left;"> <svg xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" class="svglite" width="48.00pt" height="12.00pt" viewbox="0 0 48.00 12.00"><defs><style type="text/css">
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    </td>
     <td style="text-align:right;"> -0.5118226 </td>
     <td style="text-align:right;"> 0.2463878 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.03777</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> SibSp </td>
     <td style="text-align:left;"> SibSp </td>
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    </td>
     <td style="text-align:right;"> -0.3251949 </td>
     <td style="text-align:right;"> 0.1112076 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #black !important;">0.00345</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Parch </td>
     <td style="text-align:left;"> Parch </td>
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     <td style="text-align:right;"> -0.1115613 </td>
     <td style="text-align:right;"> 0.1208131 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.35579</span> </td>
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     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> A </td>
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     <td style="text-align:right;"> 0.0000000 </td>
     <td style="text-align:right;"> 0.0000000 </td>
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     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> B </td>
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     <td style="text-align:right;"> -0.0252365 </td>
     <td style="text-align:right;"> 0.7183014 </td>
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     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> C </td>
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     <td style="text-align:right;"> -0.5019796 </td>
     <td style="text-align:right;"> 0.6626204 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.44871</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> D </td>
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     <td style="text-align:right;"> 0.4769107 </td>
     <td style="text-align:right;"> 0.7344476 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.51611</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> E </td>
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     <td style="text-align:right;"> 0.9884183 </td>
     <td style="text-align:right;"> 0.7381810 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.18057</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> F </td>
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     <td style="text-align:right;"> 0.2948757 </td>
     <td style="text-align:right;"> 0.9803112 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.76357</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> G </td>
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     <td style="text-align:right;"> -1.5773340 </td>
     <td style="text-align:right;"> 1.2574952 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.20972</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> Missing </td>
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     <td style="text-align:right;"> -0.9127259 </td>
     <td style="text-align:right;"> 0.6723476 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.17462</span> </td>
     </tr>
     <tr>
     <td style="text-align:left;"> Cabintype </td>
     <td style="text-align:left;"> T </td>
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    </td>
     <td style="text-align:right;"> -12.9204077 </td>
     <td style="text-align:right;"> 535.4114701 </td>
     <td style="text-align:right;"> <span style=" border-radius: 4px; padding-right: 4px; padding-left: 4px; background-color: #F08080 !important;">0.98075</span> </td>
     </tr>
    </tbody>
    <tfoot><tr><td style="padding: 0; " colspan="100%">
    <span style="font-style: italic;text-decoration: underline;">Goodness-of-Fit:</span>  AIC: 800.4 , Devience : 764.4 , Null Devience: 1182.8</td></tr></tfoot>
    </table>>
    > # A more complicated example with a spline and different importance method
    > survival_model3 <- stats::glm(Survived ~
    + Pclass +
    + Age_0_25 +
    + Age_25_50 +
    + Age_50_120 +
    + Sex:Fare_0_250 +
    + Sex:Fare_250_600 +
    + Embarked +
    + SibSp +
    + Parch +
    + Cabintype,
    + data = titanic,
    + family = binomial(link = 'logit'))
    > pretty_coefficients(survival_model3,
    + relativity_transform = 'exp(estimate)-1',
    + spline_seperator = '_',
    + vimethod = 'permute',
    + target = 'Survived',
    + metric = 'auc',
    + pred_wrapper = predict.glm,
    + reference_class = 0)
    Error: Training data cannot be extracted from fitted model object. Please supply the raw training data using the `train` argument.
    Execution halted
Flavor: r-oldrel-windows-x86_64