Last updated on 2023-09-01 07:55:42 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.2 | 638.46 | 236.90 | 875.36 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.2 | 469.28 | 176.78 | 646.06 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.2 | 1296.32 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.2 | 1409.17 | ERROR | |||
| r-devel-windows-x86_64 | 1.0.2 | 476.00 | 300.00 | 776.00 | NOTE | |
| r-patched-linux-x86_64 | 1.0.2 | 674.79 | 232.50 | 907.29 | ERROR | |
| r-release-linux-x86_64 | 1.0.2 | 665.64 | 235.44 | 901.08 | ERROR | |
| r-release-macos-arm64 | 1.0.2 | 314.00 | NOTE | |||
| r-release-macos-x86_64 | 1.0.2 | 506.00 | NOTE | |||
| r-release-windows-x86_64 | 1.0.2 | 606.00 | 305.00 | 911.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.0.2 | 289.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.0.2 | 337.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.0.2 | 607.00 | 298.00 | 905.00 | NOTE |
Version: 1.0.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘captioner’
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.0.2
Check: C++ specification
Result: NOTE
Specified C++11: please drop specification unless essential
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Comparing_methods_for_logistic_models.Rmd’ using rmarkdown
--- finished re-building ‘Comparing_methods_for_logistic_models.Rmd’
--- re-building ‘Diagnostics.Rmd’ using rmarkdown
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-5-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-8-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-12-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/rossi_hat_plot-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-15-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-16-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-17-1.png" but not available.
The magick package is required to crop "figure/replot-rossi_hat_plot-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-20-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-22-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-23-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-24-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-28-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-31-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-32-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-33-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-36-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-39-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-40-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-41-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-42-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-44-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-46-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-48-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-49-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-49-2.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-51-1.png" but not available.
--- finished re-building ‘Diagnostics.Rmd’
--- re-building ‘ddhazard.Rnw’ using knitr
fatal: not a git repository (or any of the parent directories): .git
Quitting from lines 418-1212 (ddhazard.Rnw)
Error: processing vignette ‘ddhazard.Rnw’ failed with diagnostics:
there is no package called 'captioner'
--- failed re-building ‘ddhazard.Rnw’
--- re-building ‘Bootstrap_illustration.pdf.asis’ using asis
--- finished re-building ‘Bootstrap_illustration.pdf.asis’
--- re-building ‘Particle_filtering.pdf.asis’ using asis
--- finished re-building ‘Particle_filtering.pdf.asis’
SUMMARY: processing the following file failed:
‘ddhazard.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Comparing_methods_for_logistic_models.Rmd’ using rmarkdown
--- finished re-building ‘Comparing_methods_for_logistic_models.Rmd’
--- re-building ‘Diagnostics.Rmd’ using rmarkdown
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-5-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-8-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-12-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/rossi_hat_plot-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-15-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-16-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-17-1.png" but not available.
The magick package is required to crop "figure/replot-rossi_hat_plot-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-20-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-22-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-23-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-24-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-28-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-31-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-32-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-33-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-36-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-39-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-40-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-41-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-42-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-44-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-46-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-48-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-49-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-49-2.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-51-1.png" but not available.
--- finished re-building ‘Diagnostics.Rmd’
--- re-building ‘ddhazard.Rnw’ using knitr
fatal: not a git repository (or any parent up to mount point /)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
Quitting from lines 418-1212 (ddhazard.Rnw)
Error: processing vignette ‘ddhazard.Rnw’ failed with diagnostics:
there is no package called 'captioner'
--- failed re-building ‘ddhazard.Rnw’
--- re-building ‘Bootstrap_illustration.pdf.asis’ using asis
--- finished re-building ‘Bootstrap_illustration.pdf.asis’
--- re-building ‘Particle_filtering.pdf.asis’ using asis
--- finished re-building ‘Particle_filtering.pdf.asis’
SUMMARY: processing the following file failed:
‘ddhazard.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.2
Check: installed package size
Result: NOTE
installed size is 8.4Mb
sub-directories of 1Mb or more:
data 4.0Mb
doc 1.7Mb
libs 2.2Mb
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-windows-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Comparing_methods_for_logistic_models.Rmd’ using rmarkdown
--- finished re-building ‘Comparing_methods_for_logistic_models.Rmd’
--- re-building ‘Diagnostics.Rmd’ using rmarkdown
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-5-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-8-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-12-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/rossi_hat_plot-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-15-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-16-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-17-1.png" but not available.
The magick package is required to crop "figure/replot-rossi_hat_plot-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-20-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-22-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-23-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-24-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-28-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-31-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-32-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-33-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-36-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-39-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-40-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-41-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-42-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-44-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-46-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-48-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-49-1.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-49-2.png" but not available.
The magick package is required to crop "/data/gannet/ripley/R/packages/tests-clang/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-51-1.png" but not available.
--- finished re-building ‘Diagnostics.Rmd’
--- re-building ‘ddhazard.Rnw’ using knitr
fatal: not a git repository (or any parent up to mount point /data)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
Quitting from lines 418-1212 (ddhazard.Rnw)
Error: processing vignette 'ddhazard.Rnw' failed with diagnostics:
there is no package called 'captioner'
--- failed re-building ‘ddhazard.Rnw’
--- re-building ‘Bootstrap_illustration.pdf.asis’ using asis
--- finished re-building ‘Bootstrap_illustration.pdf.asis’
--- re-building ‘Particle_filtering.pdf.asis’ using asis
--- finished re-building ‘Particle_filtering.pdf.asis’
SUMMARY: processing the following file failed:
‘ddhazard.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘Comparing_methods_for_logistic_models.Rmd’ using rmarkdown
--- finished re-building ‘Comparing_methods_for_logistic_models.Rmd’
--- re-building ‘Diagnostics.Rmd’ using rmarkdown
--- finished re-building ‘Diagnostics.Rmd’
--- re-building ‘ddhazard.Rnw’ using knitr
fatal: not a git repository (or any parent up to mount point /data)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
Quitting from lines 418-1212 (ddhazard.Rnw)
Error: processing vignette 'ddhazard.Rnw' failed with diagnostics:
there is no package called 'captioner'
--- failed re-building ‘ddhazard.Rnw’
--- re-building ‘Bootstrap_illustration.pdf.asis’ using asis
--- finished re-building ‘Bootstrap_illustration.pdf.asis’
--- re-building ‘Particle_filtering.pdf.asis’ using asis
--- finished re-building ‘Particle_filtering.pdf.asis’
SUMMARY: processing the following file failed:
‘ddhazard.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Comparing_methods_for_logistic_models.Rmd’ using rmarkdown
--- finished re-building ‘Comparing_methods_for_logistic_models.Rmd’
--- re-building ‘Diagnostics.Rmd’ using rmarkdown
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-5-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-8-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-12-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/rossi_hat_plot-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-15-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-16-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-17-1.png" but not available.
The magick package is required to crop "figure/replot-rossi_hat_plot-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-20-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-22-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-23-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-24-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-28-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-31-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-32-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-33-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-36-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-39-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-40-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-41-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-42-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-44-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-46-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-48-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-49-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-49-2.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-51-1.png" but not available.
--- finished re-building ‘Diagnostics.Rmd’
--- re-building ‘ddhazard.Rnw’ using knitr
fatal: not a git repository (or any of the parent directories): .git
Quitting from lines 418-1212 (ddhazard.Rnw)
Error: processing vignette ‘ddhazard.Rnw’ failed with diagnostics:
there is no package called 'captioner'
--- failed re-building ‘ddhazard.Rnw’
--- re-building ‘Bootstrap_illustration.pdf.asis’ using asis
--- finished re-building ‘Bootstrap_illustration.pdf.asis’
--- re-building ‘Particle_filtering.pdf.asis’ using asis
--- finished re-building ‘Particle_filtering.pdf.asis’
SUMMARY: processing the following file failed:
‘ddhazard.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 1.0.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Comparing_methods_for_logistic_models.Rmd’ using rmarkdown
--- finished re-building ‘Comparing_methods_for_logistic_models.Rmd’
--- re-building ‘Diagnostics.Rmd’ using rmarkdown
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-5-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-8-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-12-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/rossi_hat_plot-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-15-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-16-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-17-1.png" but not available.
The magick package is required to crop "figure/replot-rossi_hat_plot-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-20-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-22-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-23-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-24-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-28-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-31-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-32-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-33-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-36-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-39-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-40-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-41-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-42-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-44-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-46-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-48-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-49-1.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-49-2.png" but not available.
The magick package is required to crop "/home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/dynamichazard.Rcheck/vign_test/dynamichazard/vignettes/Diagnostics_files/figure-latex/unnamed-chunk-51-1.png" but not available.
--- finished re-building ‘Diagnostics.Rmd’
--- re-building ‘ddhazard.Rnw’ using knitr
fatal: not a git repository (or any of the parent directories): .git
Quitting from lines 418-1212 (ddhazard.Rnw)
Error: processing vignette ‘ddhazard.Rnw’ failed with diagnostics:
there is no package called 'captioner'
--- failed re-building ‘ddhazard.Rnw’
--- re-building ‘Bootstrap_illustration.pdf.asis’ using asis
--- finished re-building ‘Bootstrap_illustration.pdf.asis’
--- re-building ‘Particle_filtering.pdf.asis’ using asis
--- finished re-building ‘Particle_filtering.pdf.asis’
SUMMARY: processing the following file failed:
‘ddhazard.Rnw’
Error: Vignette re-building failed.
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.0.2
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘gsl’
Flavor: r-release-macos-x86_64