CRAN Package Check Results for Package avidaR

Last updated on 2023-09-11 17:54:47 CEST.

Flavor	Version	T_install	T_check	T_total	Status
r-devel-linux-x86_64-debian-clang	1.1.3	7.72	61.18	68.90	ERROR
r-devel-linux-x86_64-debian-gcc	1.1.3	5.86	46.03	51.89	ERROR
r-devel-linux-x86_64-fedora-clang	1.1.3			112.95	OK
r-devel-linux-x86_64-fedora-gcc	1.1.3				OK
r-devel-windows-x86_64	1.1.3	10.00	72.00	82.00	ERROR
r-patched-linux-x86_64	1.1.3	8.30	58.11	66.41	ERROR
r-release-linux-x86_64	1.1.3	7.56	59.05	66.61	ERROR
r-release-macos-arm64	1.1.3			96.00	OK
r-release-macos-x86_64	1.1.3			118.00	OK
r-release-windows-x86_64	1.1.3	11.00	77.00	88.00	ERROR
r-oldrel-macos-arm64	1.1.3			99.00	OK
r-oldrel-macos-x86_64	1.1.3			113.00	OK
r-oldrel-windows-x86_64	1.1.3	11.00	112.00	123.00	OK

Check Details

Version: 1.1.3
Check: examples
Result: ERROR
    Running examples in ‘avidaR-Ex.R’ failed
    The error most likely occurred in:

    > base::assign(".ptime", proc.time(), pos = "CheckExEnv")
    > ### Name: convert_seq_into_org
    > ### Title: Converts a genome instruction sequence into a digital organism
    > ### file
    > ### Aliases: convert_seq_into_org
    >
    > ### ** Examples
    >
    >
    > # Create triplestore object
    > triplestore <- triplestore_access$new()
    >
    > # Set access options
    > triplestore$set_access_options(
    + url = "https://graphdb.fortunalab.org",
    + user = "public_avida",
    + password = "public_avida",
    + repository = "avidaDB_test"
    + )
    Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
    - If error persists, please contact server administrator.
    Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [6s/11s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(avidaR)
     >
     > test_check("avidaR")
     [ FAIL 26 | WARN 2 | SKIP 0 | PASS 12 ]

     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test_get_db_summary.R:5:3'): get_db_summary ─────────────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_db_summary.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_genome_seq.R:5:3'): get_genome_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_logic_operation.R:5:3'): get_genome_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_phenotype_id.R:5:3'): get_genome_id_from_phenotype_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_transcriptome_id.R:5:3'): get_genome_id_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_of_wild_type_organisms.R:5:3'): get_genome_id_of_wild_type_organisms ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_of_wild_type_organisms.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_seq_from_genome_id.R:5:3'): get_genome_seq_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_seq_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_logic_operation_from_phenotype_id.R:5:3'): get_logic_operation_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_logic_operation_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_mutant_at_pos.R:5:3'): get_mutant_at_pos ───────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_mutant_at_pos.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_genome_id.R:5:3'): get_phenotype_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_genome_seq.R:5:3'): get_phenotype_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_logic_operation.R:5:3'): get_phenotype_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_transcriptome_id.R:5:3'): get_phenotype_id_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_genome_id.R:5:3'): get_tandem_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_genome_seq.R:5:3'): get_tandem_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_logic_operation.R:5:3'): get_tandem_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_phenotype_id.R:5:3'): get_tandem_id_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_seq_from_tandem_id.R:5:3'): get_tandem_seq_from_tandem_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_seq_from_tandem_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_genome_id.R:5:3'): get_transcriptome_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_genome_seq.R:5:3'): get_transcriptome_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_logic_operation.R:5:3'): get_transcriptome_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_phenotype_id.R:5:3'): get_transcriptome_id_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_seq_from_transcriptome_id.R:5:3'): get_transcriptome_seq_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_seq_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_ontology.R:5:3'): ongology ─────────────────────────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_ontology.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_plot_transcriptome.R:5:3'): plot_transcriptome ─────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_plot_transcriptome.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_set_access_options.R:7:3'): set_access_options ─────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_set_access_options.R:7:2
     2. └─avidaR:::server_api_get(...)

     [ FAIL 26 | WARN 2 | SKIP 0 | PASS 12 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.1.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [4s/10s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(avidaR)
     >
     > test_check("avidaR")
     [ FAIL 26 | WARN 2 | SKIP 0 | PASS 12 ]

     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test_get_db_summary.R:5:3'): get_db_summary ─────────────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_db_summary.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_genome_seq.R:5:3'): get_genome_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_logic_operation.R:5:3'): get_genome_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_phenotype_id.R:5:3'): get_genome_id_from_phenotype_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_transcriptome_id.R:5:3'): get_genome_id_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_of_wild_type_organisms.R:5:3'): get_genome_id_of_wild_type_organisms ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_of_wild_type_organisms.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_seq_from_genome_id.R:5:3'): get_genome_seq_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_seq_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_logic_operation_from_phenotype_id.R:5:3'): get_logic_operation_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_logic_operation_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_mutant_at_pos.R:5:3'): get_mutant_at_pos ───────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_mutant_at_pos.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_genome_id.R:5:3'): get_phenotype_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_genome_seq.R:5:3'): get_phenotype_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_logic_operation.R:5:3'): get_phenotype_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_transcriptome_id.R:5:3'): get_phenotype_id_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_genome_id.R:5:3'): get_tandem_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_genome_seq.R:5:3'): get_tandem_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_logic_operation.R:5:3'): get_tandem_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_phenotype_id.R:5:3'): get_tandem_id_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_seq_from_tandem_id.R:5:3'): get_tandem_seq_from_tandem_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_seq_from_tandem_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_genome_id.R:5:3'): get_transcriptome_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_genome_seq.R:5:3'): get_transcriptome_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_logic_operation.R:5:3'): get_transcriptome_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_phenotype_id.R:5:3'): get_transcriptome_id_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_seq_from_transcriptome_id.R:5:3'): get_transcriptome_seq_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_seq_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_ontology.R:5:3'): ongology ─────────────────────────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_ontology.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_plot_transcriptome.R:5:3'): plot_transcriptome ─────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_plot_transcriptome.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_set_access_options.R:7:3'): set_access_options ─────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_set_access_options.R:7:2
     2. └─avidaR:::server_api_get(...)

     [ FAIL 26 | WARN 2 | SKIP 0 | PASS 12 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.1.3
Check: examples
Result: ERROR
    Running examples in 'avidaR-Ex.R' failed
    The error most likely occurred in:

    > ### Name: convert_seq_into_org
    > ### Title: Converts a genome instruction sequence into a digital organism
    > ### file
    > ### Aliases: convert_seq_into_org
    >
    > ### ** Examples
    >
    >
    > # Create triplestore object
    > triplestore <- triplestore_access$new()
    >
    > # Set access options
    > triplestore$set_access_options(
    + url = "https://graphdb.fortunalab.org",
    + user = "public_avida",
    + password = "public_avida",
    + repository = "avidaDB_test"
    + )
    Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
    - If error persists, please contact server administrator.
    Execution halted
Flavors: r-devel-windows-x86_64, r-release-windows-x86_64

Version: 1.1.3
Check: tests
Result: ERROR
     Running 'testthat.R' [7s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(avidaR)
     >
     > test_check("avidaR")
     [ FAIL 26 | WARN 2 | SKIP 0 | PASS 12 ]

     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test_get_db_summary.R:5:3'): get_db_summary ─────────────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_db_summary.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_genome_seq.R:5:3'): get_genome_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_logic_operation.R:5:3'): get_genome_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_phenotype_id.R:5:3'): get_genome_id_from_phenotype_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_transcriptome_id.R:5:3'): get_genome_id_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_of_wild_type_organisms.R:5:3'): get_genome_id_of_wild_type_organisms ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_of_wild_type_organisms.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_seq_from_genome_id.R:5:3'): get_genome_seq_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_seq_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_logic_operation_from_phenotype_id.R:5:3'): get_logic_operation_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_logic_operation_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_mutant_at_pos.R:5:3'): get_mutant_at_pos ───────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_mutant_at_pos.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_genome_id.R:5:3'): get_phenotype_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_genome_seq.R:5:3'): get_phenotype_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_logic_operation.R:5:3'): get_phenotype_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_transcriptome_id.R:5:3'): get_phenotype_id_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_genome_id.R:5:3'): get_tandem_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_genome_seq.R:5:3'): get_tandem_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_logic_operation.R:5:3'): get_tandem_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_phenotype_id.R:5:3'): get_tandem_id_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_seq_from_tandem_id.R:5:3'): get_tandem_seq_from_tandem_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_seq_from_tandem_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_genome_id.R:5:3'): get_transcriptome_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_genome_seq.R:5:3'): get_transcriptome_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_logic_operation.R:5:3'): get_transcriptome_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_phenotype_id.R:5:3'): get_transcriptome_id_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_seq_from_transcriptome_id.R:5:3'): get_transcriptome_seq_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_seq_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_ontology.R:5:3'): ongology ─────────────────────────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_ontology.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_plot_transcriptome.R:5:3'): plot_transcriptome ─────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_plot_transcriptome.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_set_access_options.R:7:3'): set_access_options ─────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_set_access_options.R:7:2
     2. └─avidaR:::server_api_get(...)

     [ FAIL 26 | WARN 2 | SKIP 0 | PASS 12 ]
     Error: Test failures
     Execution halted
Flavor: r-devel-windows-x86_64

Version: 1.1.3
Check: tests
Result: ERROR
     Running ‘testthat.R’ [5s/10s]
    Running the tests in ‘tests/testthat.R’ failed.
    Complete output:
     > library(testthat)
     > library(avidaR)
     >
     > test_check("avidaR")
     [ FAIL 26 | WARN 2 | SKIP 0 | PASS 12 ]

     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test_get_db_summary.R:5:3'): get_db_summary ─────────────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_db_summary.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_genome_seq.R:5:3'): get_genome_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_logic_operation.R:5:3'): get_genome_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_phenotype_id.R:5:3'): get_genome_id_from_phenotype_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_transcriptome_id.R:5:3'): get_genome_id_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_of_wild_type_organisms.R:5:3'): get_genome_id_of_wild_type_organisms ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_of_wild_type_organisms.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_seq_from_genome_id.R:5:3'): get_genome_seq_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_seq_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_logic_operation_from_phenotype_id.R:5:3'): get_logic_operation_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_logic_operation_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_mutant_at_pos.R:5:3'): get_mutant_at_pos ───────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_mutant_at_pos.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_genome_id.R:5:3'): get_phenotype_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_genome_seq.R:5:3'): get_phenotype_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_logic_operation.R:5:3'): get_phenotype_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_transcriptome_id.R:5:3'): get_phenotype_id_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_genome_id.R:5:3'): get_tandem_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_genome_seq.R:5:3'): get_tandem_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_logic_operation.R:5:3'): get_tandem_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_phenotype_id.R:5:3'): get_tandem_id_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_seq_from_tandem_id.R:5:3'): get_tandem_seq_from_tandem_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_seq_from_tandem_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_genome_id.R:5:3'): get_transcriptome_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_genome_seq.R:5:3'): get_transcriptome_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_logic_operation.R:5:3'): get_transcriptome_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_phenotype_id.R:5:3'): get_transcriptome_id_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_seq_from_transcriptome_id.R:5:3'): get_transcriptome_seq_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_seq_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_ontology.R:5:3'): ongology ─────────────────────────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_ontology.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_plot_transcriptome.R:5:3'): plot_transcriptome ─────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_plot_transcriptome.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_set_access_options.R:7:3'): set_access_options ─────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_set_access_options.R:7:2
     2. └─avidaR:::server_api_get(...)

     [ FAIL 26 | WARN 2 | SKIP 0 | PASS 12 ]
     Error: Test failures
     Execution halted
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64

Version: 1.1.3
Check: tests
Result: ERROR
     Running 'testthat.R' [8s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
     > library(testthat)
     > library(avidaR)
     >
     > test_check("avidaR")
     [ FAIL 26 | WARN 2 | SKIP 0 | PASS 12 ]

     ══ Failed tests ════════════════════════════════════════════════════════════════
     ── Error ('test_get_db_summary.R:5:3'): get_db_summary ─────────────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_db_summary.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_genome_seq.R:5:3'): get_genome_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_logic_operation.R:5:3'): get_genome_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_phenotype_id.R:5:3'): get_genome_id_from_phenotype_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_from_transcriptome_id.R:5:3'): get_genome_id_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_id_of_wild_type_organisms.R:5:3'): get_genome_id_of_wild_type_organisms ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_id_of_wild_type_organisms.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_genome_seq_from_genome_id.R:5:3'): get_genome_seq_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_genome_seq_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_logic_operation_from_phenotype_id.R:5:3'): get_logic_operation_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_logic_operation_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_mutant_at_pos.R:5:3'): get_mutant_at_pos ───────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_mutant_at_pos.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_genome_id.R:5:3'): get_phenotype_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_genome_seq.R:5:3'): get_phenotype_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_logic_operation.R:5:3'): get_phenotype_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_phenotype_id_from_transcriptome_id.R:5:3'): get_phenotype_id_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_phenotype_id_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_genome_id.R:5:3'): get_tandem_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_genome_seq.R:5:3'): get_tandem_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_logic_operation.R:5:3'): get_tandem_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_id_from_phenotype_id.R:5:3'): get_tandem_id_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_tandem_seq_from_tandem_id.R:5:3'): get_tandem_seq_from_tandem_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_tandem_seq_from_tandem_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_genome_id.R:5:3'): get_transcriptome_id_from_genome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_genome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_genome_seq.R:5:3'): get_transcriptome_id_from_genome_seq ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_genome_seq.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_logic_operation.R:5:3'): get_transcriptome_id_from_logic_operation ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_logic_operation.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_id_from_phenotype_id.R:5:3'): get_transcriptome_id_from_phenotype ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_id_from_phenotype_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_get_transcriptome_seq_from_transcriptome_id.R:5:3'): get_transcriptome_seq_from_transcriptome_id ──
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_get_transcriptome_seq_from_transcriptome_id.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_ontology.R:5:3'): ongology ─────────────────────────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_ontology.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_plot_transcriptome.R:5:3'): plot_transcriptome ─────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_plot_transcriptome.R:5:2
     2. └─avidaR:::server_api_get(...)
     ── Error ('test_set_access_options.R:7:3'): set_access_options ─────────────────
     Error: Server responded with status code '526 - It seems that the server SSL certificate is not valid':
     - If error persists, please contact server administrator.
     Backtrace:
     ▆
     1. └─triplestore$set_access_options(...) at test_set_access_options.R:7:2
     2. └─avidaR:::server_api_get(...)

     [ FAIL 26 | WARN 2 | SKIP 0 | PASS 12 ]
     Error: Test failures
     Execution halted
Flavor: r-release-windows-x86_64